Motif list for 1VSA

Return to FR3D home page for 1VSA
List of all pairwise interactions in 1VSA
List of basepair interactions in 1VSA
List of stacking interactions in 1VSA
PDB entry for 1VSA
Return to list of analyzed structures
Basepair catalog
FR3D motif library
FR3D home page
BGSU RNA group home page

LIB00001_HL=GNRA

  Filename Discrepancy       1       2       3       4 Chai
      1VSA      0.3710  G  476  A  477  A  478  A  480 wwww
      1VSA      0.2890  G  545  C  546  A  547  A  548 wwww
      1VSA      0.4018  G  630  A  631  A  632  A  633 wwww
      1VSA      0.3840  G  642  A  643  A  644  A  646 wwww
      1VSA      0.4046  G 2595  U 2596  G 2597  A 2598 wwww

LIB00002_IL_tWH-insertion-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9 Chains   
      1VSA      0.4809  C  998  U  999  A 1000  A 1001  G 1002  C 1153  G 1154  A 1155  G 1157 wwwwwwwww
      1VSA      0.4849  C 1351  U 1352  A 1353  A 1354  G 1355  C 1376  G 1377  A 1378  G 1380 wwwwwwwww
      1VSA      0.3749  C 1577  U 1578  A 1579  A 1580  G 1581  C 1417  G 1418  A 1419  G 1421 wwwwwwwww

LIB00003_IL_tSH-tWH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      1VSA      0.4551  G  356  A  357  U  358  A  359  G  360  C  280  G  281  A  282  A  283  U  284 wwwwwwwwww
      1VSA      0.2957  C 1370  G 1371  U 1372  A 1373  G 1374  U 1357  G 1358  A 1359  A 1360  G 1361 wwwwwwwwww

LIB00004_IL_tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8 Chains  
      1VSA      0.3832  C 2364  G 2365  A 2366  G 2367  C 2350  G 2351  A 2352  G 2353 wwwwwwww

LIB00005_IL_tSH-tHH-cSH-tWH-tHS_sarcin-ricin

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      1VSA      0.2524  U  239  G  240  A  241  G  242  U  243  A  244  G  245  C  253  G  254  A  255  A  256  A  257  G  258 wwwwwwwwwwwww
      1VSA      0.3597  U 1263  G 1264  A 1265  G 1266  U 1267  A 1268  A 1269  U 2011  G 2012  A 2013  A 2014  A 2015  U 2016 wwwwwwwwwwwww

LIB00006_IL_tSH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      1VSA      0.2444  G 1856  G 1857  G 1858  A 1859  G 1860  C 1882  G 1883  A 1884  A 1885  C 1886 wwwwwwwwww

LIB00008_HL=UNCG

  Filename Discrepancy       1       2       3       4       5       6 Chains
      1VSA      0.3509  C 1691  U 1692  U 1693  C 1694  G 1695  G 1696 wwwwww

LIB00010_IL_tSH-with bulged out bases

  Filename Discrepancy       1       2       3       4       5       6 Chains
      1VSA      0.3704  C 2081  A 2082  G 2083  C 2236  G 2237  G 2239 wwwwww

LIB00013_IL_tHS_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      1VSA      0.3421  C 2297  A 2298  G 2299  C 2317  G 2318  G 2321 wwwwww

LIB00014_IL_tSH-tSH-tHS-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12 Chains      
      1VSA      0.3480  C 1686  G 1687  U 1688  A 1689  A 1690  C 1691  G 1696  G 1697  A 1698  A 1700  A 1701  G 1702 wwwwwwwwwwww

LIB00200_IL_cWW-tHW-cSW-cWW_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      1VSA      0.3413  A 1331  C 1333  G 1319  C 1320  A 1322  U 1323 wwwwww