Motif list for 2JL8

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List of all pairwise interactions in 2JL8
List of basepair interactions in 2JL8
List of stacking interactions in 2JL8
PDB entry for 2JL8
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Basepair catalog
FR3D motif library
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LIB00001_HL=GNRA

  Filename Discrepancy       1       2       3       4 Chai
      2JL8      0.2772  G  463  U  464  G  465  A  466 AAAA
      2JL8      0.2211  G  476  A  477  A  478  A  480 AAAA
      2JL8      0.2385  G  488  G  489  G  491  A  492 AAAA
      2JL8      0.3622  G  544  C  545  A  547  A  548 AAAA
      2JL8      0.2705  G  630  A  631  A  632  A  633 AAAA
      2JL8      0.3633  U 1066  A 1067  G 1068  A 1069 AAAA
      2JL8      0.2933  G 1223  C 1224  G 1225  A 1226 AAAA
      2JL8      0.2367  G 1807  U 1808  A 1809  A 1810 AAAA
      2JL8      0.3687  G 1865  C 1866  A 1876  A 1877 AAAA
      2JL8      0.2387  G 2375  A 2376  A 2377  A 2378 AAAA
      2JL8      0.3561  G 2595  U 2596  G 2597  A 2598 AAAA
      2JL8      0.2345  G 2659  A 2660  G 2661  A 2662 AAAA
      2JL8      0.3727  G 2857  C 2858  G 2859  A 2860 AAAA
      2JL8      0.2722  G   87  C   88  G   89  A   90 BBBB

LIB00002_IL_tWH-insertion-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9 Chains   
      2JL8      0.3563  U  606  U  607  A  608  A  609  G  610  C  618  G  619  A  621  G  622 AAAAAAAAA
      2JL8      0.1091  C  998  U  999  A 1000  A 1001  G 1002  C 1153  G 1154  A 1155  G 1157 AAAAAAAAA
      2JL8      0.2189  C 1351  U 1352  A 1353  A 1354  G 1355  C 1376  G 1377  A 1378  G 1380 AAAAAAAAA
      2JL8      0.1740  C 1577  U 1578  A 1579  A 1580  G 1581  C 1417  G 1418  A 1419  G 1421 AAAAAAAAA

LIB00003_IL_tSH-tWH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2JL8      0.2458  C 1370  G 1371  U 1372  A 1373  G 1374  U 1357  G 1358  A 1359  A 1360  G 1361 AAAAAAAAAA

LIB00004_IL_tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8 Chains  
      2JL8      0.2708  C 2350  G 2351  A 2352  G 2353  C 2364  G 2365  A 2366  G 2367 AAAAAAAA

LIB00005_IL_tSH-tHH-cSH-tWH-tHS_sarcin-ricin

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2JL8      0.1017  U  202  C  203  A  204  G  205  U  206  A  207  C  208  G  188  G  189  A  190  A  191  C  192  U  193 AAAAAAAAAAAAA
      2JL8      0.2055  U  239  G  240  A  241  G  242  U  243  A  244  G  245  C  253  G  254  A  255  A  256  A  257  G  258 AAAAAAAAAAAAA

LIB00006_IL_tSH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2JL8      0.4079  U  724  G  725  G  726  A  727  G  728  U  703  G  704  A  705  A  706  G  707 AAAAAAAAAA
      2JL8      0.0971  G 1856  G 1857  G 1858  A 1859  G 1860  C 1882  G 1883  A 1884  A 1885  C 1886 AAAAAAAAAA

LIB00007_IL_tSH-tSH-tHS_kink-turn

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2JL8      0.4210  G   81  G   82  G   83  A   84  G   85  C   97  G   98  U   99  G  100  G  102  A  103  U  104  C  105 AAAAAAAAAAAAA

LIB00008_HL=UNCG

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2JL8      0.1627  C 1691  U 1692  U 1693  C 1694  G 1695  G 1696 AAAAAA

LIB00010_IL_tSH-with bulged out bases

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2JL8      0.0775  C 2081  A 2082  G 2083  C 2236  G 2237  G 2239 AAAAAA

LIB00011_HL=T-loop

  Filename Discrepancy       1       2       3       4       5       6       7 Chains 
      2JL8      0.3437  U  305  U  306  G  307  G  308  G  309  A  310  G  312 AAAAAAA
      2JL8      0.3534  G 1281  U 1282  G 1283  A 1284  G 1285  A 1286  C 1289 AAAAAAA

LIB00013_IL_tHS_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2JL8      0.3497  C 1102  A 1103  C 1104  G 1055  G 1056  G 1087 AAAAAA
      2JL8      0.2858  C 2081  A 2082  G 2083  C 2236  G 2237  G 2239 AAAAAA

LIB00014_IL_tSH-tSH-tHS-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12 Chains      
      2JL8      0.2712  C 1686  G 1687  U 1688  A 1689  A 1690  C 1691  G 1696  G 1697  A 1698  A 1700  A 1701  G 1702 AAAAAAAAAAAA

LIB00016_IL_tWH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2JL8      0.2266  U 2636  U 2637  G 2638  A 2639  G 2640  C 2774  A 2775  A 2776  A 2778  G 2782 AAAAAAAAAA

LIB00100_IL_cWW-cWS-cWW

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2JL8      0.2550  U  905  G  906  U  907  A  870  U  871  A  872 AAAAAA
      2JL8      0.1436  C 1196  G 1197  U 1198  A 1247  U 1249  G 1250 AAAAAA

LIB00200_IL_cWW-tHW-cSW-cWW_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2JL8      0.1548  A 1331  C 1333  G 1319  C 1320  A 1322  U 1323 AAAAAA