Motif list for 2QBA

Return to FR3D home page for 2QBA
List of all pairwise interactions in 2QBA
List of basepair interactions in 2QBA
List of stacking interactions in 2QBA
PDB entry for 2QBA
Return to list of analyzed structures
Basepair catalog
FR3D motif library
FR3D home page
BGSU RNA group home page

LIB00001_HL=GNRA

  Filename Discrepancy       1       2       3       4 Chai
      2QBA      0.2951  G  463  U  464  G  465  A  466 BBBB
      2QBA      0.2558  G  476  A  477  A  478  A  480 BBBB
      2QBA      0.1829  G  630  A  631  A  632  A  633 BBBB
      2QBA      0.3914  U 1066  A 1067  G 1068  A 1069 BBBB
      2QBA      0.4109  G 1223  U 1224  G 1225  A 1226 BBBB
      2QBA      0.2400  G 1631  A 1632  G 1633  A 1635 BBBB
      2QBA      0.2961  G 2357  A 2358  C 2359  G 2360 BBBB
      2QBA      0.3472  G 2375  A 2376  A 2377  A 2378 BBBB
      2QBA      0.3691  G 2595  U 2596  G 2597  A 2598 BBBB
      2QBA      0.1432  G 2659  A 2660  G 2661  A 2662 BBBB
      2QBA      0.2814  G 2857  C 2858  G 2859  A 2860 BBBB

LIB00002_IL_tWH-insertion-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9 Chains   
      2QBA      0.4102  U  606  U  607  A  608  A  609  C  610  G  618  G  619  A  621  G  622 BBBBBBBBB
      2QBA      0.1247  C  998  U  999  A 1000  A 1001  G 1002  C 1153  G 1154  A 1155  G 1157 BBBBBBBBB
      2QBA      0.1851  C 1351  U 1352  A 1353  A 1354  G 1355  C 1376  G 1377  A 1378  G 1380 BBBBBBBBB
      2QBA      0.3126  C 1370  G 1371  U 1372  A 1373  G 1374  C 1357  G 1358  G 1360  G 1361 BBBBBBBBB
      2QBA      0.1809  C 1577  U 1578  A 1579  A 1580  G 1581  C 1417  G 1418  A 1419  G 1421 BBBBBBBBB
      2QBA      0.2078  A 2738  U 2739  A 2740  A 2741  G 2742  C 2762  G 2763  A 2764  A 2766 BBBBBBBBB

LIB00004_IL_tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8 Chains  
      2QBA      0.0766  U  554  G  555  A  556  C  557  G  536  G  537  A  538  G  539 BBBBBBBB
      2QBA      0.3619  U 1883  G 1884  A 1885  U 1886  U 1856  G 1857  A 1858  U 1859 BBBBBBBB
      2QBA      0.3081  C 2350  G 2351  A 2352  G 2353  C 2364  G 2365  A 2366  G 2367 BBBBBBBB

LIB00005_IL_tSH-tHH-cSH-tWH-tHS_sarcin-ricin

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2QBA      0.0666  U  202  A  203  A  204  G  205  U  206  A  207  C  208  G  188  G  189  A  190  A  191  C  192  U  193 BBBBBBBBBBBBB
      2QBA      0.1792  C  239  C  240  A  241  G  242  U  243  A  244  G  245  C  253  G  254  A  255  A  256  C  257  G  258 BBBBBBBBBBBBB
      2QBA      0.2248  U 1263  A 1264  A 1265  G 1266  U 1267  A 1268  A 1269  U 2011  G 2012  A 2013  A 2014  A 2015  U 2016 BBBBBBBBBBBBB

LIB00006_IL_tSH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBA      0.3812  U  724  G  725  G  726  A  727  G  728  U  703  G  704  A  705  A  706  G  707 BBBBBBBBBB
      2QBA      0.3098  U 1736  G 1737  G 1738  A 1739  G 1740  U 1720  G 1721  A 1722  G 1723  G 1724 BBBBBBBBBB

LIB00007_IL_tSH-tSH-tHS_kink-turn

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2QBA      0.3500  U 1234  G 1235  G 1236  A 1237  G 1238  C 1208  U 1209  G 1210  C 1211  G 1212  A 1213  A 1214  G 1215 BBBBBBBBBBBBB

LIB00008_HL=UNCG

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBA      0.2944  C 1533  U 1534  A 1535  C 1536  G 1537  G 1538 BBBBBB
      2QBA      0.2057  C 1691  U 1692  U 1693  C 1694  G 1695  G 1696 BBBBBB

LIB00009_IL_cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2QBA      0.2903  A 2679  U 2680  C 2681  A 2682  C 2683  U 2684  G 2685  G 2686  C 2723  U 2724  A 2725  A 2727  U 2728 BBBBBBBBBBBBB

LIB00010_IL_tSH-with bulged out bases

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBA      0.2628  U 2081  A 2082  G 2083  U 2236  G 2237  G 2239 BBBBBB
      2QBA      0.2789  A 2297  A 2298  U 2299  A 2317  G 2318  U 2321 BBBBBB

LIB00011_HL=T-loop

  Filename Discrepancy       1       2       3       4       5       6       7 Chains 
      2QBA      0.3292  C  305  U  306  G  307  G  308  A  309  A  310  G  312 BBBBBBB
      2QBA      0.3474  U  566  U  567  U  568  U  569  G  570  U  571  A  575 BBBBBBB
      2QBA      0.2960  G 1281  U 1282  G 1283  A 1284  A 1285  A 1286  C 1289 BBBBBBB

LIB00013_IL_tHS_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBA      0.3707  C 1102  A 1103  C 1104  G 1055  G 1056  G 1087 BBBBBB
      2QBA      0.3939  U 2081  A 2082  G 2083  U 2236  G 2237  G 2239 BBBBBB
      2QBA      0.2892  A 2297  A 2298  U 2299  A 2317  G 2318  U 2321 BBBBBB

LIB00014_IL_tSH-tSH-tHS-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12 Chains      
      2QBA      0.0635  C 1686  G 1687  U 1688  A 1689  A 1690  C 1691  G 1696  G 1697  A 1698  A 1700  A 1701  G 1702 BBBBBBBBBBBB

LIB00015_IL_(cWH-cWW)-(tHW-cWW)

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBA      0.1413  C 1837  C 1838  G 1840  U 1841  G 1842  U 1898  A 1899  A 1901  C 1902  G 1903 BBBBBBBBBB

LIB00016_IL_tWH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBA      0.1903  C 2636  U 2637  G 2638  A 2639  G 2640  C 2774  G 2775  A 2776  A 2778  G 2782 BBBBBBBBBB

LIB00100_IL_cWW-cWS-cWW

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBA      0.2280  C 1196  G 1197  U 1198  A 1247  U 1249  G 1250 BBBBBB

LIB00200_IL_cWW-tHW-cSW-cWW_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBA      0.3217  G 1331  G 1333  C 1319  C 1320  A 1322  C 1323 BBBBBB
      2QBA      0.2391  A 2725  A 2727  U 2680  C 2681  C 2683  U 2684 BBBBBB