Motif list for 2QBE

Return to FR3D home page for 2QBE
List of all pairwise interactions in 2QBE
List of basepair interactions in 2QBE
List of stacking interactions in 2QBE
PDB entry for 2QBE
Return to list of analyzed structures
Basepair catalog
FR3D motif library
FR3D home page
BGSU RNA group home page

LIB00001_HL=GNRA

  Filename Discrepancy       1       2       3       4 Chai
      2QBE      0.2988  G  463  U  464  G  465  A  466 BBBB
      2QBE      0.2693  G  476  A  477  A  478  A  480 BBBB
      2QBE      0.2245  G  630  A  631  A  632  A  633 BBBB
      2QBE      0.3922  U 1066  A 1067  G 1068  A 1069 BBBB
      2QBE      0.2906  G 1631  A 1632  G 1633  A 1635 BBBB
      2QBE      0.2735  G 2357  A 2358  C 2359  G 2360 BBBB
      2QBE      0.3087  G 2375  A 2376  A 2377  A 2378 BBBB
      2QBE      0.3305  G 2595  U 2596  G 2597  A 2598 BBBB
      2QBE      0.1653  G 2659  A 2660  G 2661  A 2662 BBBB
      2QBE      0.3035  G 2857  C 2858  G 2859  A 2860 BBBB

LIB00002_IL_tWH-insertion-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9 Chains   
      2QBE      0.3975  U  606  U  607  A  608  A  609  C  610  G  618  G  619  A  621  G  622 BBBBBBBBB
      2QBE      0.1390  C  998  U  999  A 1000  A 1001  G 1002  C 1153  G 1154  A 1155  G 1157 BBBBBBBBB
      2QBE      0.1778  C 1351  U 1352  A 1353  A 1354  G 1355  C 1376  G 1377  A 1378  G 1380 BBBBBBBBB
      2QBE      0.1943  C 1577  U 1578  A 1579  A 1580  G 1581  C 1417  G 1418  A 1419  G 1421 BBBBBBBBB
      2QBE      0.2128  A 2738  U 2739  A 2740  A 2741  G 2742  C 2762  G 2763  A 2764  A 2766 BBBBBBBBB

LIB00003_IL_tSH-tWH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBE      0.2650  C 1370  G 1371  U 1372  A 1373  G 1374  C 1357  G 1358  A 1359  G 1360  G 1361 BBBBBBBBBB

LIB00004_IL_tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8 Chains  
      2QBE      0.0569  U  554  G  555  A  556  C  557  G  536  G  537  A  538  G  539 BBBBBBBB
      2QBE      0.3823  U 1883  G 1884  A 1885  U 1886  U 1856  G 1857  A 1858  U 1859 BBBBBBBB
      2QBE      0.2698  C 2350  G 2351  A 2352  G 2353  C 2364  G 2365  A 2366  G 2367 BBBBBBBB

LIB00005_IL_tSH-tHH-cSH-tWH-tHS_sarcin-ricin

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2QBE      0.0689  U  202  A  203  A  204  G  205  U  206  A  207  C  208  G  188  G  189  A  190  A  191  C  192  U  193 BBBBBBBBBBBBB
      2QBE      0.1777  C  239  C  240  A  241  G  242  U  243  A  244  G  245  C  253  G  254  A  255  A  256  C  257  G  258 BBBBBBBBBBBBB
      2QBE      0.2255  U 1263  A 1264  A 1265  G 1266  U 1267  A 1268  A 1269  U 2011  G 2012  A 2013  A 2014  A 2015  U 2016 BBBBBBBBBBBBB

LIB00006_IL_tSH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBE      0.3735  U  724  G  725  G  726  A  727  G  728  U  703  G  704  A  705  A  706  G  707 BBBBBBBBBB
      2QBE      0.3274  U 1736  G 1737  G 1738  A 1739  G 1740  U 1720  G 1721  A 1722  G 1723  G 1724 BBBBBBBBBB

LIB00007_IL_tSH-tSH-tHS_kink-turn

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2QBE      0.3275  U 1234  G 1235  G 1236  A 1237  G 1238  C 1208  U 1209  G 1210  C 1211  G 1212  A 1213  A 1214  G 1215 BBBBBBBBBBBBB

LIB00008_HL=UNCG

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBE      0.3693  C 1533  U 1534  A 1535  C 1536  G 1537  G 1538 BBBBBB
      2QBE      0.1818  C 1691  U 1692  U 1693  C 1694  G 1695  G 1696 BBBBBB

LIB00009_IL_cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2QBE      0.2999  A 2679  U 2680  C 2681  A 2682  C 2683  U 2684  G 2685  G 2686  C 2723  U 2724  A 2725  A 2727  U 2728 BBBBBBBBBBBBB

LIB00010_IL_tSH-with bulged out bases

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBE      0.2733  U 2081  A 2082  G 2083  U 2236  G 2237  G 2239 BBBBBB
      2QBE      0.2684  A 2297  A 2298  U 2299  A 2317  G 2318  U 2321 BBBBBB

LIB00011_HL=T-loop

  Filename Discrepancy       1       2       3       4       5       6       7 Chains 
      2QBE      0.3395  C  305  U  306  G  307  G  308  A  309  A  310  G  312 BBBBBBB
      2QBE      0.3084  U  566  U  567  U  568  U  569  G  570  U  571  A  575 BBBBBBB
      2QBE      0.3167  G 1281  U 1282  G 1283  A 1284  A 1285  A 1286  C 1289 BBBBBBB

LIB00013_IL_tHS_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBE      0.2883  C 1102  A 1103  C 1104  G 1055  G 1056  G 1087 BBBBBB
      2QBE      0.2264  A 2297  A 2298  U 2299  A 2317  G 2318  U 2321 BBBBBB

LIB00014_IL_tSH-tSH-tHS-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12 Chains      
      2QBE      0.0423  C 1686  G 1687  U 1688  A 1689  A 1690  C 1691  G 1696  G 1697  A 1698  A 1700  A 1701  G 1702 BBBBBBBBBBBB

LIB00015_IL_(cWH-cWW)-(tHW-cWW)

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBE      0.1393  C 1837  C 1838  G 1840  U 1841  G 1842  U 1898  A 1899  A 1901  C 1902  G 1903 BBBBBBBBBB

LIB00016_IL_tWH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2QBE      0.2056  C 2636  U 2637  G 2638  A 2639  G 2640  C 2774  G 2775  A 2776  A 2778  G 2782 BBBBBBBBBB

LIB00100_IL_cWW-cWS-cWW

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBE      0.2264  C 1196  G 1197  U 1198  A 1247  U 1249  G 1250 BBBBBB

LIB00200_IL_cWW-tHW-cSW-cWW_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2QBE      0.3655  G 1331  G 1333  C 1319  C 1320  A 1322  C 1323 BBBBBB
      2QBE      0.2521  A 2725  A 2727  U 2680  C 2681  C 2683  U 2684 BBBBBB