Motif list for 2Z4N

Return to FR3D home page for 2Z4N
List of all pairwise interactions in 2Z4N
List of basepair interactions in 2Z4N
List of stacking interactions in 2Z4N
PDB entry for 2Z4N
Return to list of analyzed structures
Basepair catalog
FR3D motif library
FR3D home page
BGSU RNA group home page

LIB00001_HL=GNRA

  Filename Discrepancy       1       2       3       4 Chai
      2Z4N      0.3372  G  463  U  464  G  465  A  466 BBBB
      2Z4N      0.2667  G  476  A  477  A  478  A  480 BBBB
      2Z4N      0.1925  G  630  A  631  A  632  A  633 BBBB
      2Z4N      0.3952  U 1066  A 1067  G 1068  A 1069 BBBB
      2Z4N      0.3055  G 1631  A 1632  G 1633  A 1635 BBBB
      2Z4N      0.2832  G 2357  A 2358  C 2359  G 2360 BBBB
      2Z4N      0.3099  G 2375  A 2376  A 2377  A 2378 BBBB
      2Z4N      0.3662  G 2595  U 2596  G 2597  A 2598 BBBB
      2Z4N      0.1169  G 2659  A 2660  G 2661  A 2662 BBBB
      2Z4N      0.2964  G 2857  C 2858  G 2859  A 2860 BBBB

LIB00002_IL_tWH-insertion-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9 Chains   
      2Z4N      0.3935  U  606  U  607  A  608  A  609  C  610  G  618  G  619  A  621  G  622 BBBBBBBBB
      2Z4N      0.1304  C  998  U  999  A 1000  A 1001  G 1002  C 1153  G 1154  A 1155  G 1157 BBBBBBBBB
      2Z4N      0.2037  C 1351  U 1352  A 1353  A 1354  G 1355  C 1376  G 1377  A 1378  G 1380 BBBBBBBBB
      2Z4N      0.3226  C 1370  G 1371  U 1372  A 1373  G 1374  C 1357  G 1358  G 1360  G 1361 BBBBBBBBB
      2Z4N      0.1776  C 1577  U 1578  A 1579  A 1580  G 1581  C 1417  G 1418  A 1419  G 1421 BBBBBBBBB
      2Z4N      0.2076  A 2738  U 2739  A 2740  A 2741  G 2742  C 2762  G 2763  A 2764  A 2766 BBBBBBBBB

LIB00004_IL_tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8 Chains  
      2Z4N      0.0918  U  554  G  555  A  556  C  557  G  536  G  537  A  538  G  539 BBBBBBBB
      2Z4N      0.3100  U 1883  G 1884  A 1885  U 1886  U 1856  G 1857  A 1858  U 1859 BBBBBBBB
      2Z4N      0.2759  C 2350  G 2351  A 2352  G 2353  C 2364  G 2365  A 2366  G 2367 BBBBBBBB

LIB00005_IL_tSH-tHH-cSH-tWH-tHS_sarcin-ricin

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2Z4N      0.0707  U  202  A  203  A  204  G  205  U  206  A  207  C  208  G  188  G  189  A  190  A  191  C  192  U  193 BBBBBBBBBBBBB
      2Z4N      0.2033  C  239  C  240  A  241  G  242  U  243  A  244  G  245  C  253  G  254  A  255  A  256  C  257  G  258 BBBBBBBBBBBBB
      2Z4N      0.2437  U 1263  A 1264  A 1265  G 1266  U 1267  A 1268  A 1269  U 2011  G 2012  A 2013  A 2014  A 2015  U 2016 BBBBBBBBBBBBB

LIB00006_IL_tSH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2Z4N      0.3651  U  724  G  725  G  726  A  727  G  728  U  703  G  704  A  705  A  706  G  707 BBBBBBBBBB
      2Z4N      0.3230  U 1736  G 1737  G 1738  A 1739  G 1740  U 1720  G 1721  A 1722  G 1723  G 1724 BBBBBBBBBB

LIB00008_HL=UNCG

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2Z4N      0.2246  C 1533  U 1534  A 1535  C 1536  G 1537  G 1538 BBBBBB
      2Z4N      0.2087  C 1691  U 1692  U 1693  C 1694  G 1695  G 1696 BBBBBB

LIB00009_IL_cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13 Chains       
      2Z4N      0.2987  A 2679  U 2680  C 2681  A 2682  C 2683  U 2684  G 2685  G 2686  C 2723  U 2724  A 2725  A 2727  U 2728 BBBBBBBBBBBBB

LIB00010_IL_tSH-with bulged out bases

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2Z4N      0.2453  U 2081  A 2082  G 2083  U 2236  G 2237  G 2239 BBBBBB
      2Z4N      0.2642  A 2297  A 2298  U 2299  A 2317  G 2318  U 2321 BBBBBB

LIB00011_HL=T-loop

  Filename Discrepancy       1       2       3       4       5       6       7 Chains 
      2Z4N      0.3290  C  305  U  306  G  307  G  308  A  309  A  310  G  312 BBBBBBB
      2Z4N      0.3382  U  566  U  567  U  568  U  569  G  570  U  571  A  575 BBBBBBB
      2Z4N      0.3359  G 1281  U 1282  G 1283  A 1284  A 1285  A 1286  C 1289 BBBBBBB

LIB00012_IL_cWW-tWH-cWW_GAAA-receptor

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2Z4N      0.4980  G 2234  G 2235  U 2236  G 2237  G 2239  U 2240  A 2080  A 2082  C 2084  U 2085 BBBBBBBBBB

LIB00013_IL_tHS_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2Z4N      0.2379  C 1102  A 1103  C 1104  G 1055  G 1056  G 1087 BBBBBB
      2Z4N      0.3726  U 2081  A 2082  G 2083  U 2236  G 2237  G 2239 BBBBBB
      2Z4N      0.2713  A 2297  A 2298  U 2299  A 2317  G 2318  U 2321 BBBBBB

LIB00014_IL_tSH-tSH-tHS-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12 Chains      
      2Z4N      0.0615  C 1686  G 1687  U 1688  A 1689  A 1690  C 1691  G 1696  G 1697  A 1698  A 1700  A 1701  G 1702 BBBBBBBBBBBB

LIB00015_IL_(cWH-cWW)-(tHW-cWW)

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2Z4N      0.1196  C 1837  C 1838  G 1840  U 1841  G 1842  U 1898  A 1899  A 1901  C 1902  G 1903 BBBBBBBBBB

LIB00016_IL_tWH-tSH-tHS

  Filename Discrepancy       1       2       3       4       5       6       7       8       9      10 Chains    
      2Z4N      0.1913  C 2636  U 2637  G 2638  A 2639  G 2640  C 2774  G 2775  A 2776  A 2778  G 2782 BBBBBBBBBB

LIB00100_IL_cWW-cWS-cWW

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2Z4N      0.2190  C 1196  G 1197  U 1198  A 1247  U 1249  G 1250 BBBBBB

LIB00200_IL_cWW-tHW-cSW-cWW_C-loop

  Filename Discrepancy       1       2       3       4       5       6 Chains
      2Z4N      0.3619  G 1331  G 1333  C 1319  C 1320  A 1322  C 1323 BBBBBB
      2Z4N      0.2639  A 2725  A 2727  U 2680  C 2681  C 2683  U 2684 BBBBBB