| PDBID | FR3D analysis | NTs | Pairs | Res | Date | Organism | Description provided by author | Author | Represents |
|---|
| 2AW4 | FR3D | 2958 | 1329 | 3.5 | 11/8/2005 | Escherichia coli | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. | Schuwirth, B.S., Borovinskaya, M.A., Hau, C.W., Zhang, W., Vila-Sanjurjo, A., Holton, J.M., Cate, J.H.D. | 1VS6 1VS8 2AWB 2I2T 2I2V 2QAM 2QAO 2QBA 2QBC 2QBE 2QBG 2QBI 2QBK 2QOV 2QOX 2QOZ 2QP1 2VHM 2VHN 3DF2 3DF4 |
| 2J01 | FR3D | 2891 | 1235 | 2.8 | 9/28/2006 | THERMUS THERMOPHILUS | STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. | Selmer, M., Dunham, C.M., Murphy, F.V., Weixlbaumer, A., Petry, S., Weir, J.R., Kelley, A.C., Ramakrishnan, V. | 1VSA 1VSP 2J03 2JL6 2JL8 2V47 2V49 3D5B 3D5D 3F1F 3F1H |
| 1S72 | FR3D | 2871 | 1395 | 2.4 | 6/15/2004 | Haloarcula marismortui | REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION | Klein, D.J., Schmeing, T.M., Moore, P.B., Steitz, T.A. | 1FFK 1JJ2 1K73 1K8A 1K9M 1KC8 1KD1 1KQS 1M1K 1M90 1N8R 1NJI 1Q7Y 1Q81 1Q82 1Q86 1QVF 1QVG 1VQ4 1VQ5 1VQ6 1VQ7 1VQ8 1VQ9 1VQK 1VQL 1VQM 1VQN 1VQO 1VQP 1W2B 1YHQ 1YI2 1YIJ 1YIT 1YJ9 1YJN 1YJW 2OTJ 2OTL 2QA4 2QEX 3CC2 3CC4 3CC7 3CCE 3CCJ 3CCL 3CCM 3CCQ 3CCR 3CCS 3CCU 3CCV 3CD6 3CMA 3CME 3CPW |
| 2ZJR | FR3D | 2808 | 1181 | 2.9 | 6/17/2008 | Deinococcus radiodurans | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P. | 1J5A 1JZX 1JZY 1JZZ 1K01 1NJM 1NJN 1NJO 1NJP 1NKW 1NWX 1NWY 1OND 1P9X 1SM1 1XBP 1Y69 1Z58 2AAR 2D3O 2O43 2O44 2O45 2OGM 2OGN 2OGO 2ZJP 2ZJQ 3CF5 3DLL |
| 2AVY | FR3D | 1530 | 681 | 3.5 | 11/8/2005 | Escherichia coli | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. | Schuwirth, B.S., Borovinskaya, M.A., Hau, C.W., Zhang, W., Vila-Sanjurjo, A., Holton, J.M., Cate, J.H.D. | 1VS5 1VS7 2AW7 2I2P 2I2U 2QAL 2QAN 2QB9 2QBB 2QBD 2QBF 2QBH 2QBJ 2QOU 2QOW 2QOY 2QP0 2VHO 2VHP 3DF1 3DF3 |
| 1J5E | FR3D | 1513 | 692 | 3.0 | 4/12/2002 | Thermus thermophilus | Structure of the Thermus thermophilus 30S Ribosomal Subunit | Wimberly, B.T., Brodersen, D.E., Clemons Jr., W.M., Morgan-Warren, R., Carter, A.P., Vonrhein, C., Hartsch, T., Ramakrishnan, V. | 1FJG 1FKA 1HNW 1HNX 1HNZ 1HR0 1I94 1IBK 1IBL 1IBM 1N32 1N33 1N34 1N36 1XMO 1XMQ 1XNQ 1XNR 2E5L 2F4V 2HHH 2J00 2J02 2JL5 2JL7 2OW8 2QNH 2UU9 2UUA 2UUB 2UUC 2UXB 2UXC 2UXD 2V46 2V48 2VQE 2VQF 3D5A 3D5C 3F1E 3F1G |
| 1X8W | FR3D | 968 | 370 | 3.8 | 11/9/2004 | | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | Guo, F., Gooding, A.R., Cech, T.R. | Unique |
| 2NZ4 | FR3D | 594 | 242 | 2.5 | 1/16/2007 | Homo sapiens | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | Cochrane, J.C. | Unique |
| 1FG0 | FR3D | 498 | 200 | 3.0 | 8/28/2000 | Haloarcula marismortui | LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND | Nissen, P., Hansen, J., Ban, N., Moore, P.B., Steitz, T.A. | 1FFZ |
| 3EOH | FR3D | 381 | 161 | 3.1 | 10/28/2008 | | Refined group II intron structure | Toor, N., Rajashankar, K., Keating, K.S., Pyle, A.M. | 3EOG |
| 3BWP | FR3D | 349 | 151 | 3.1 | 4/15/2008 | | Crystal structure of a self-spliced group II intron | Toor, N., Keating, K.S., Taylor, S.D., Pyle, A.M. | Unique |
| 1GID | FR3D | 316 | 154 | 2.5 | 12/31/1996 | synthetic construct | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | Cate, J.H., Gooding, A.R., Podell, E., Zhou, K., Golden, B.L., Kundrot, C.E., Cech, T.R., Doudna, J.A. | 1HR2 1L8V |
| 2A64 | FR3D | 298 | 115 | 3.3 | 9/20/2005 | | Crystal Structure of Bacterial Ribonuclease P RNA | Kazantsev, A.V., Krivenko, A.A., Harrington, D.J., Holbrook, S.R., Adams, P.D., Pace, N.R. | Unique |
| 1KOG | FR3D | 296 | 125 | 3.5 | 4/26/2002 | Escherichia coli | Crystal structure of E. coli threonyl-tRNA synthetase interacting with the essential domain of its mRNA operator | Torres-Larrios, A., Dock-Bregeon, A.C., Romby, P., Rees, B., Sankaranarayanan, R., Caillet, J., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D. | Unique |
| 2NR0 | FR3D | 272 | 98 | 3.9 | 5/15/2007 | Escherichia coli K12 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | Hur, S., Stroud, R.M. | Unique |
| 1NBS | FR3D | 270 | 114 | 3.2 | 2/18/2003 | Bacillus subtilis | Crystal structure of the specificity domain of Ribonuclease P RNA | Krasilnikov, A.S., Yang, X., Pan, T., Mondragon, A. | Unique |
| 2IL9 | FR3D | 267 | 47 | 3.1 | 2/13/2007 | | Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms | Pfingsten, J.S., Costantino, D.A., Kieft, J.S. | Unique |
| 2A2E | FR3D | 266 | 101 | 3.8 | 9/6/2005 | | Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type. | Torres-Larios, A., Swinger, K.K., Krasilnikov, A.S., Pan, T., Mondragon, A. | Unique |
| 2CZJ | FR3D | 240 | 69 | 3.0 | 10/31/2006 | Thermus thermophilus HB8 | Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8 | Bessho, Y., Shibata, R., Sekine, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Unique |
| 1Y0Q | FR3D | 233 | 89 | 3.6 | 12/21/2004 | Staphylococcus phage Twort | Crystal structure of an active group I ribozyme-product complex | Golden, B.L., Kim, H., Chase, E. | Unique |
| 1M5O | FR3D | 224 | 95 | 2.2 | 10/12/2002 | Homo sapiens | Transition State Stabilization by a Catalytic RNA | Rupert, P.B., Massey, A.P., Sigurdsson, S.T., Ferre-D'Amare, A.R. | 1M5P 1M5V |
| 1M5K | FR3D | 220 | 91 | 2.4 | 8/2/2002 | Homo sapiens | Crystal structure of a hairpin ribozyme in the catalytically-active conformation | Rupert, P.B., Ferre-D'Amare, A.R. | Unique |
| 1U6B | FR3D | 219 | 108 | 3.1 | 8/10/2004 | Homo sapiens | CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS | Adams, P.L., Stahley, M.R., Kosek, A.B., Wang, J., Strobel, S.A. | 1ZZN 3BO2 3BO3 3BO4 |
| 2V3C | FR3D | 192 | 85 | 2.5 | 9/4/2007 | METHANOCALDOCOCCUS JANNASCHII | CRYSTAL STRUCTURE OF THE SRP54-SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII | Hainzl, T., Huang, S., Sauer-Eriksson, A.E. | Unique |
| 1OB5 | FR3D | 183 | 66 | 3.1 | 10/13/2005 | THERMUS AQUATICUS | SACCHAROMYCES CEREVISIAE | T. AQUATICUS ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC ENACYLOXIN IIA, A GTP ANALOG, AND PHE-TRNA | Dahlberg, C., Nielsen, R.C., Parmeggiani, A., Nyborg, J., Nissen, P. | 1TTT |
| 3CUL | FR3D | 182 | 67 | 2.8 | 6/24/2008 | | Homo sapiens | Aminoacyl-tRNA synthetase ribozyme | Xiao, H., Murakami, H., Suga, H., Ferre-D'Amare, A.R. | 3CUN |
| 1WZ2 | FR3D | 176 | 66 | 3.2 | 9/6/2005 | Pyrococcus horikoshii OT3 | The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex | Fukunaga, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Unique |
| 1ET4 | FR3D | 175 | 85 | 2.3 | 11/13/2000 | | CRYSTAL STRUCTURE OF A VITAMIN B12 BINDING RNA APTAMER WITH LIGAND AT 2.3 A | Sussman, D., Wilson, C. | Unique |
| 3DIG | FR3D | 173 | 82 | 2.8 | 9/16/2008 | | CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine | Serganov, A.A. | 3DIL 3DIM 3DIO 3DIQ 3DIR 3DIS 3DIX 3DIY 3DIZ 3DJ0 3DJ2 |
| 1G1X | FR3D | 169 | 61 | 2.6 | 10/30/2000 | Thermus thermophilus | STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18, AND 16S RIBOSOMAL RNA | Agalarov, S.C., Prasad, G.S., Funke, P.M., Stout, C.D., Williamson, J.R. | Unique |
| 3D0U | FR3D | 161 | 77 | 2.8 | 7/1/2008 | | Crystal Structure of Lysine Riboswitch Bound to Lysine | Garst, A.D., Heroux, A., Rambo, R.P., Batey, R.T. | 3D0X |
| 2R8S | FR3D | 159 | 73 | 2.0 | 12/4/2007 | Mus musculus | High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain | Ye, J.D., Tereshko, V., Sidhu, S.S., Koide, S., Kossiakoff, A.A., Piccirilli, J.A. | Unique |
| 2BTE | FR3D | 156 | 72 | 2.9 | 9/15/2005 | THERMUS THERMOPHILUS | THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION AND A POST-TRANSFER EDITING SUBSTRATE ANALOGUE | Cusack, S., Tukalo, M., Yaremchuk, A., Fukunaga, R., Yokoyama, S. | 2BYT |
| 2GDI | FR3D | 156 | 71 | 2.0 | 7/4/2006 | | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | Serganov, A. | Unique |
| 2QWY | FR3D | 156 | 61 | 2.8 | 1/22/2008 | | SAM-II riboswitch bound to S-adenosylmethionine | Gilbert, S.D., Rambo, R.P., Van Tyne, D., Batey, R.T. | Unique |
| 1U9S | FR3D | 155 | 71 | 2.9 | 10/26/2004 | | Crystal structure of the specificity domain of Ribonuclease P of the A-type | Krasilnikov, A.S., Xiao, Y., Pan, T., Mondragon, A. | Unique |
| 3D2G | FR3D | 154 | 70 | 2.3 | 7/1/2008 | Arabidopsis thaliana | Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch | Thore, S. | 2CKY 3D2V 3D2X |
| 2QBZ | FR3D | 153 | 76 | 2.6 | 9/18/2007 | | Structure of the M-Box Riboswitch Aptamer Domain | Dann III, C.E., Winkler, W.C. | Unique |
| 1ZHO | FR3D | 152 | 71 | 2.6 | 5/9/2006 | Thermus thermophilus | The structure of a ribosomal protein L1 in complex with mRNA | Nevskaya, N., Tishchenko, S., Volchkov, S., Kljashtorny, V., Nikonova, E., Nikonov, O., Nikulin, A., Kohrer, C., Piendl, W., Zimmermann, R., Stockley, P., Garber, M., Nikonov, S. | Unique |
| 1GAX | FR3D | 150 | 57 | 2.9 | 12/6/2000 | Thermus thermophilus | CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE | Fukai, S., Nureki, O., Sekine, S., Shimada, A., Tao, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 1IVS |
| 2CV1 | FR3D | 150 | 64 | 2.4 | 9/5/2006 | Thermus thermophilus | Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex | Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 1G59 1N77 1N78 2CV0 2CV2 2DXI |
| 2QUX | FR3D | 150 | 54 | 2.4 | 12/18/2007 | Pseudomonas phage PP7 | PP7 coat protein dimer in complex with RNA hairpin | Chao, J.A. | Unique |
| 2V0G | FR3D | 150 | 61 | 3.5 | 7/3/2007 | THERMUS THERMOPHILUS | LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A TRNA(LEU) TRANSCRIPT WITH 5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE (AN2690) FORMING AN ADDUCT TO THE RIBOSE OF ADENOSINE-76 IN THE ENZYME EDITING SITE. | Rock, F., Mao, W., Yaremchuk, A., Tukalo, M., Crepin, T., Zhou, H., Zhang, Y., Hernandez, V., Akama, T., Baker, S., Plattner, J., Shapiro, L., Martinis, S.A., Benkovic, S.J., Cusack, S., Alley, M.R.K. | Unique |
| 1J2B | FR3D | 148 | 39 | 3.3 | 5/27/2003 | Pyrococcus horikoshii | Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val) | Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Unique |
| 2CT8 | FR3D | 148 | 52 | 2.7 | 9/20/2005 | Aquifex aeolicus | Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met) and methionyl-adenylate anologue | Nakanishi, K., Ogiso, Y., Nakama, T., Fukai, S., Nureki, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 2CSX |
| 2D6F | FR3D | 146 | 48 | 3.2 | 7/11/2006 | Methanothermobacter thermautotrophicus | Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln) | Nureki, O. | Unique |
| 2DER | FR3D | 145 | 53 | 3.1 | 8/15/2006 | Escherichia coli | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | Numata, T., Ikeuchi, Y., Fukai, S., Suzuki, T., Nureki, O. | 2DEU |
| 2AZX | FR3D | 144 | 55 | 2.8 | 8/1/2006 | Homo sapiens | Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase | Yang, X.L., Otero, F.J., Ewalt, K.L., Liu, J., Swairjo, M.A., Kohrer, C., RajBhandary, U.L., Skene, R.J., McRee, D.E., Schimmel, P. | Unique |
| 2FMT | FR3D | 144 | 44 | 2.8 | 7/29/1999 | Escherichia coli | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | Schmitt, E., Mechulam, Y., Blanquet, S. | Unique |
| 2ZNI | FR3D | 144 | 50 | 3.1 | 12/30/2008 | Desulfitobacterium hafniense | Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense | Nozawa, K., Araiso, Y., Soll, D., Ishitani, R., Nureki, O. | Unique |
| 3FOZ | FR3D | 143 | 56 | 2.5 | 1/20/2009 | Escherichia coli K-12 | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | Seif, E., Hallberg, B.M. | Unique |
| 2OIU | FR3D | 142 | 63 | 2.6 | 3/13/2007 | | L1 Ribozyme Ligase circular adduct | Robertson, M.P, Scott, W.G. | Unique |
| 2HO7 | FR3D | 141 | 64 | 2.9 | 9/26/2006 | | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | Klein, D.J., Ferre-D'Amare, A.R. | 2GCS 2GCV 2H0S 2H0W 2H0X 2H0Z 2HO6 2Z74 2Z75 3B4A 3B4B 3B4C |
| 1DDY | FR3D | 140 | 59 | 3.0 | 1/1/2000 | | MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER | Sussman, D., Nix, J.C., Wilson, C. | Unique |
| 3EPJ | FR3D | 138 | 47 | 3.1 | 11/4/2008 | Saccharomyces cerevisiae | Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism | Huang, R.H., Zhou, C. | 3EPH 3EPK 3EPL |
| 2QUS | FR3D | 136 | 48 | 2.4 | 7/15/2008 | | Hammerhead Ribozyme G12A mutant pre-cleavage | Chi, Y.-I., Scott, W.G., Kim, S.-H. | Unique |
| 2QUW | FR3D | 134 | 49 | 2.2 | 7/15/2008 | | Hammerhead Ribozyme G12A mutant after cleavage | Chi, Y.-I., Scott, W.G., Kim, S.-H. | Unique |
| 1IL2 | FR3D | 129 | 56 | 2.6 | 9/28/2001 | Saccharomyces cerevisiae | Escherichia coli | Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex | Moulinier, L., Eiler, S., Eriani, G., Gangloff, J., Thierry, J.C., Gabriel, K., McClain, W.H., Moras, D. | 1ASY 1ASZ |
| 1MFQ | FR3D | 127 | 55 | 3.1 | 9/20/2002 | Homo sapiens | Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle | Kuglstatter, A., Oubridge, C., Nagai, K. | 1L9A |
| 1EFW | FR3D | 126 | 50 | 3.0 | 6/19/2000 | Thermus thermophilus | Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli | Briand, C., Poterszman, A., Eiler, S., Webster, G., Thierry, J.-C., Moras, D. | Unique |
| 1UN6 | FR3D | 122 | 50 | 3.1 | 11/20/2003 | XENOPUS LAEVIS | THE CRYSTAL STRUCTURE OF A ZINC FINGER - RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION | Lu, D., Searles, M.A., Klug, A. | Unique |
| 1MMS | FR3D | 116 | 54 | 2.6 | 4/17/2000 | Thermotoga maritima | CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN L11-RNA COMPLEX | Wimberly, B.T., Guymon, R., Mccutcheon, J.P., White, S.W., Ramakrishnan, V. | Unique |
| 1QA6 | FR3D | 116 | 58 | 2.8 | 5/25/1999 | Geobacillus stearothermophilus | CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX | Conn, G.L., Draper, D.E., Lattman, E.E., Gittis, A.G. | 1HC8 |
| 1ZX7 | FR3D | 116 | 49 | 2.2 | 9/20/2005 | | Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative | Zhao, Q., Zhao, F., Blount, K.F., Han, Q., Tor, Y., Hermann, T. | Unique |
| 1Y39 | FR3D | 114 | 53 | 2.8 | 3/22/2005 | Geobacillus stearothermophilus | Co-evolution of protein and RNA structures within a highly conserved ribosomal domain | Dunstan, M.S., GuhaThakurta, D., Draper, D.E., Conn, G.L. | Unique |
| 3F4E | FR3D | 109 | 49 | 3.0 | 1/27/2009 | | Crystal structure of the FMN riboswitch bound to FMN, split RNA. | Serganov, A.A., Huang, L. | 3F2Q 3F2T 3F2W 3F2X 3F2Y 3F30 3F4G 3F4H |
| 1DUQ | FR3D | 104 | 44 | 2.1 | 5/16/2000 | | CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 | Hung, L.-W., Holbrook, E.L., Holbrook, S.R. | Unique |
| 1HMH | FR3D | 102 | 30 | 2.6 | 12/7/1995 | | THREE-DIMENSIONAL STRUCTURE OF A HAMMERHEAD RIBOZYME | Pley, H.W., Flaherty, K.M., McKay, D.B. | Unique |
| 1U63 | FR3D | 98 | 41 | 3.4 | 4/12/2005 | Methanocaldococcus jannaschii | THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-mRNA COMPLEX | Nevskaya, N., Tishchenko, S., Gabdoulkhakov, A., Nikonova, E., Nikonov, O., Nikulin, A., Garber, M., Nikonov, S., Piendl, W. | Unique |
| 1YKV | FR3D | 98 | 42 | 3.3 | 2/22/2005 | | Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene | Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J. | 1YKQ |
| 1LNG | FR3D | 97 | 44 | 2.3 | 6/7/2002 | Methanocaldococcus jannaschii | Crystal Structure of the SRP19-7S.S SRP RNA Complex of M. jannaschii | Hainzl, T., Huang, S., Sauer-Eriksson, A.E. | 1Z43 |
| 1NUJ | FR3D | 96 | 41 | 1.8 | 8/19/2003 | | THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION | Wedekind, J.E., Mckay, D.B. | 1NUV |
| 1YYW | FR3D | 96 | 48 | 2.8 | 11/22/2005 | Aquifex aeolicus | Crystal structure of RNase III from Aquifex aeolicus complexed with double stranded RNA at 2.8-Angstrom Resolution | Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X. | Unique |
| 1S03 | FR3D | 94 | 42 | 2.7 | 5/25/2004 | Escherichia coli | The Structure of a Ribosomal Protein S8/spc Operon mRNA Complex | Merianos, H.J., Wang, J., Moore, P.B. | Unique |
| 2GIS | FR3D | 94 | 43 | 2.9 | 7/4/2006 | | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | Montange, R.K., Batey, R.T. | Unique |
| 2VPL | FR3D | 94 | 39 | 2.3 | 9/23/2008 | METHANOCALDOCOCCUS JANNASCHII | THERMUS THERMOPHILUS | THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII | Kljashtorny, V., Tishchenko, S., Nevskaya, N., Nikonov, S., Garber, M. | Unique |
| 3FU2 | FR3D | 93 | 47 | 2.8 | 3/3/2009 | | Cocrystal structure of a class-I preQ1 riboswitch | Klein, D.J., Edwards, T.E., Ferre-D'Amare, A.R. | Unique |
| 1K9W | FR3D | 92 | 32 | 3.1 | 11/30/2001 | | HIV-1(MAL) RNA Dimerization Initiation Site | Ennifar, E., Walter, P., Ehresmann, B., Ehresmann, C., Dumas, P. | Unique |
| 3CIY | FR3D | 92 | 46 | 3.4 | 5/6/2008 | Mus musculus | Mouse Toll-like receptor 3 ectodomain complexed with double-stranded RNA | Liu, L., Botos, I., Wang, Y., Leonard, J.N., Shiloach, J., Segal, D.M., Davies, D.R. | Unique |
| 1ZCI | FR3D | 88 | 36 | 1.6 | 1/31/2006 | | HIV-1 DIS RNA subtype F- monoclinic form | Ennifar, E., Dumas, P. | 2FCZ |
| 2NOK | FR3D | 88 | 35 | 3.0 | 2/13/2007 | | Crystal Structure of an RNA domain from Hepatitis C virus. | Dibrov, S.M., Johnston-Cos, H., Weng, Y.H. | Unique |
| 1YLS | FR3D | 86 | 34 | 3.0 | 2/22/2005 | | Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene | Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J. | Unique |
| 3BNQ | FR3D | 86 | 30 | 2.0 | 6/24/2008 | | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative) | Kondo, J., Westhof, E. | Unique |
| 3BNR | FR3D | 85 | 29 | 2.1 | 6/24/2008 | | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative) | Kondo, J., Westhof, E. | 3BNS |
| 2PN4 | FR3D | 84 | 32 | 2.3 | 4/1/2008 | | Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | Zhao, Q., Han, Q., Kissinger, C.R., Thompson, P.A. | Unique |
| 3BNN | FR3D | 84 | 28 | 2.0 | 6/24/2008 | | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | Kondo, J., Westhof, E. | Unique |
| 1MME | FR3D | 82 | 31 | 3.1 | 2/6/1996 | | THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | Scott, W.G., Finch, J.T., Klug, A. | Unique |
| 1D4R | FR3D | 81 | 22 | 2.0 | 12/2/1999 | | 29-mer fragment of human srp rna helix 6 | Wild, K., Weichenrieder, O., Leonard, G.A., Cusack, S. | Unique |
| 1Q93 | FR3D | 81 | 37 | 2.3 | 11/25/2003 | | Crystal structure of a mutant of the sarcin/ricin domain from rat 28S rRNA | Correll, C.C., Beneken, J., Plantinga, M.J., Lubbers, M., Chan, Y.L. | Unique |
| 1Q96 | FR3D | 81 | 37 | 1.8 | 11/25/2003 | | Crystal structure of a mutant of the sarcin/ricin domain from rat 28S rRNA | Correll, C.C., Beneken, J., Plantinga, M.J., Lubbers, M., Chan, Y.L. | Unique |
| 1FEU | FR3D | 80 | 32 | 2.3 | 6/25/2001 | Thermus thermophilus | CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA. | Fedorov, R.V., Meshcheryakov, V.A., Gongadze, G.M., Fomenkova, N.P., Nevskaya, N.A., Selmer, M., Laurberg, M., Kristensen, O., Al-Karadaghi, S., Liljas, A., Garber, M.B., Nikonov, S.V. | Unique |
| 2G3S | FR3D | 80 | 40 | 1.5 | 1/16/2007 | | RNA structure containing GU base pairs | Jang, S.B., Hung, L.W., Jeong, M.S., Holbrook, E.L., Chen, X., Turner, D.H., Holbrook, S.R. | Unique |
| 3BNO | FR3D | 80 | 27 | 2.3 | 6/24/2008 | | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | Kondo, J., Westhof, E. | Unique |
| 2I82 | FR3D | 79 | 28 | 2.0 | 11/21/2006 | Escherichia coli | Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure | Hoang, C. | Unique |
| 1H3E | FR3D | 77 | 31 | 2.9 | 10/27/2002 | THERMUS THERMOPHILUS | TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH WILD-TYPE TRNATYR(GUA) AND WITH ATP AND TYROSINOL | Cusack, S., Yaremchuk, A., Kriklivyi, I., Tukalo, M. | Unique |
| 1EIY | FR3D | 76 | 27 | 3.3 | 3/6/2000 | Thermus thermophilus HB8 | THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE | Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Safro, M. | 2IY5 |
| 1TFW | FR3D | 76 | 29 | 2.2 | 8/10/2004 | Archaeoglobus fulgidus | How CCA is added to the 3' end of immature tRNA without the use of an oligonucleotide template | Xiong, Y., Steitz, T.A. | Unique |
| 1FFY | FR3D | 75 | 32 | 2.2 | 8/7/2000 | Staphylococcus aureus | INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN | Silvian, L.F., Wang, J., Steitz, T.A. | 1QU2 1QU3 |
| 1I6U | FR3D | 74 | 37 | 2.6 | 8/3/2001 | Methanocaldococcus jannaschii | RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII | Tishchenko, S., Nikulin, A., Fomenkova, N., Nevskaya, N., Nikonov, O., Dumas, P., Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., Lamzin, V., Garber, M., Nikonov, S. | Unique |
| 1J1U | FR3D | 74 | 32 | 2.0 | 6/3/2003 | Methanocaldococcus jannaschii | Crystal structure of archaeal tyrosyl-tRNA synthetase complexed with tRNA(Tyr) and L-tyrosine | Kobayashi, T., Nureki, O., Ishitani, R., Tukalo, M., Cusack, S., Sakamoto, K., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Unique |
| 1QRS | FR3D | 74 | 30 | 2.6 | 12/7/1996 | Escherichia coli | GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA | Arnez, J.G., Steitz, T.A. | 1EUQ 1EUY 1EXD 1GTR 1GTS 1O0B 1O0C 1QRT 1QRU 1QTQ 1ZJW 2RD2 2RE8 |
| 1U0B | FR3D | 74 | 30 | 2.3 | 11/23/2004 | Escherichia coli | Crystal structure of cysteinyl-tRNA synthetase binary complex with tRNACys | Hauenstein, S., Zhang, C.M., Hou, Y.M., Perona, J.J. | Unique |
| 2HOJ | FR3D | 74 | 33 | 2.5 | 9/19/2006 | | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | Edwards, T.E., Ferre-D'Amare, A.R. | 2HOK 2HOL 2HOM 2HOO |
| 1I9V | FR3D | 73 | 29 | 2.6 | 6/4/2001 | Saccharomyces cerevisiae | CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX | Mikkelsen, N.E., Johansson, K., Virtanen, A., Kirsebom, L.A. | Unique |
| 1SJ4 | FR3D | 73 | 30 | 2.7 | 5/18/2004 | Homo sapiens | Hepatitis delta virus | Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution | Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A. | 1CX0 1DRZ 1SJ3 1SJF 1VBX 1VBY 1VBZ 1VC0 1VC5 1VC6 1VC7 2OIH 2OJ3 |
| 1TFY | FR3D | 73 | 30 | 3.2 | 8/10/2004 | Archaeoglobus fulgidus | How CCA is added to the 3' end of immature tRNA without the use of an oligonucleotide template | Xiong, Y., Steitz, T.A. | Unique |
| 1QBP | FR3D | 72 | 29 | 2.1 | 11/26/1999 | | CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS | Anderson, A.C., O'Neil, R.H., Filman, D.J., Frederick, C.A. | Unique |
| 2AKE | FR3D | 72 | 20 | 3.1 | 7/11/2006 | Homo sapiens | Bos taurus | Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp) | Shen, N., Guo, L., Yang, B., Jin, Y., Ding, J. | 2DR2 |
| 3CW5 | FR3D | 72 | 25 | 3.1 | 9/2/2008 | Escherichia coli | E. coli Initiator tRNA | Barraud, P., Schmitt, E., Mechulam, Y., Dardel, F., Tisne, C. | 3CW6 |
| 1Y26 | FR3D | 71 | 33 | 2.1 | 12/28/2004 | Vibrio vulnificus | A-riboswitch-adenine complex | Serganov, A., Yuan, Y.R., Patel, D.J. | Unique |
| 2DU3 | FR3D | 71 | 24 | 2.6 | 3/13/2007 | Archaeoglobus fulgidus | Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine | Fukunaga, R. | 2DU4 2DU5 2DU6 |
| 2GJW | FR3D | 71 | 31 | 2.8 | 9/12/2006 | Archaeoglobus fulgidus | RNA Recognition and Cleavage by an Splicing Endonuclease | Xue, S., Calvin, K., Li, H. | Unique |
| 1KXK | FR3D | 70 | 28 | 3.0 | 3/22/2002 | | Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron | Zhang, L., Doudna, J.A. | Unique |
| 2DET | FR3D | 70 | 23 | 3.4 | 8/15/2006 | Escherichia coli | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | Numata, T., Ikeuchi, Y., Fukai, S., Suzuki, T., Nureki, O. | Unique |
| 1P6V | FR3D | 69 | 16 | 3.2 | 8/12/2003 | Aquifex aeolicus | Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB | Gutmann, S., Haebel, P.W., Metzinger, L., Sutter, M., Felden, B., Ban, N. | Unique |
| 1QF6 | FR3D | 69 | 28 | 2.9 | 5/6/1999 | Escherichia coli | STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA | Sankaranarayanan, R., Dock-Bregeon, A.C., Rees, B., Moras, D. | Unique |
| 2HOP | FR3D | 69 | 24 | 3.3 | 9/19/2006 | | Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine | Edwards, T.E., Ferre-D'Amare, A.R. | Unique |
| 1C0A | FR3D | 68 | 25 | 2.4 | 11/23/1999 | Escherichia coli | CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX | Eiler, S., Dock-Bregeon, A.-C., Moulinier, L., Thierry, J.-C., Moras, D. | Unique |
| 1MJI | FR3D | 68 | 26 | 2.5 | 1/21/2003 | Thermus thermophilus | Escherichia coli | DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX | Perederina, A., Nevskaya, N., Nikonov, O., Nikulin, A., Dumas, P., Yao, M., Tanaka, I., Garber, M., Gongadze, G., Nikonov, S. | Unique |
| 2EET | FR3D | 67 | 35 | 2.0 | 11/13/2007 | | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | Gilbert, S.D., Edwards, A.L., Batey, R.T. | 1U8D 1Y27 2B57 2EES 2EEU 2EEV 2EEW 2G9C |
| 1B23 | FR3D | 66 | 23 | 2.6 | 12/7/1998 | Thermus aquaticus | Escherichia coli | E. coli cysteinyl-tRNA and T. aquaticus elongation factor EF-TU:GTP ternary complex | Nissen, P., Kjeldgaard, M., Thirup, S., Nyborg, J. | Unique |
| 2OZB | FR3D | 66 | 25 | 2.6 | 3/20/2007 | Homo sapiens | Structure of a human Prp31-15.5K-U4 snRNA complex | Liu, S., Luehrmann, R., Wahl, M.C. | Unique |
| 1H4Q | FR3D | 65 | 25 | 3.0 | 6/18/2001 | THERMUS THERMOPHILUS | PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG), ATP AND PROLINOL | Yaremchuk, A., Tukalo, M., Cusack, S. | 1H4S |
| 1VFG | FR3D | 65 | 16 | 2.8 | 8/10/2004 | Aquifex aeolicus | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | Tomita, K., Fukai, S., Ishitani, R., Ueda, T., Takeuchi, N., Vassylyev, D.G., Nureki, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Unique |
| 1WSU | FR3D | 65 | 26 | 2.3 | 1/25/2005 | Moorella thermoacetica | C-terminal domain of elongation factor selB complexed with SECIS RNA | Yoshizawa, S., Rasubala, L., Ose, T., Kohda, D., Fourmy, D., Maenaka, K. | Unique |
| 2NQP | FR3D | 65 | 20 | 3.5 | 5/15/2007 | Escherichia coli K12 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | Hur, S., Stroud, R.M. | Unique |
| 2TRA | FR3D | 65 | 28 | 3.0 | 11/6/1987 | | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | Westhof, E., Dumas, P., Moras, D. | 3TRA |
| 488D | FR3D | 65 | 32 | 3.1 | 3/6/2000 | | CATALYTIC RNA ENZYME-PRODUCT COMPLEX | Murray, J.B., Szoke, H., Szoke, A., Scott, W.G. | Unique |
| 1T0D | FR3D | 64 | 28 | 2.2 | 6/15/2004 | | Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA | Shandrick, S., Zhao, Q., Han, Q., Ayida, B.K., Takahashi, M., Winters, G.C., Simonsen, K.B., Vourloumis, D., Hermann, T. | Unique |
| 1YFG | FR3D | 64 | 22 | 3.0 | 9/3/1997 | Saccharomyces cerevisiae | YEAST INITIATOR TRNA | Basavappa, R., Sigler, P.B. | Unique |
| 3EGZ | FR3D | 64 | 20 | 2.2 | 10/28/2008 | Homo sapiens | Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch | Xiao, H., Edwards, T.E., Ferre-D'Amare, A.R. | Unique |
| 1EHZ | FR3D | 62 | 23 | 1.9 | 10/2/2000 | | The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution | Shi, H., Moore, P.B. | 1EVV 1OB2 1TN2 1TRA 4TNA 4TRA 6TNA |
| 1FIR | FR3D | 61 | 22 | 3.3 | 1/17/2001 | Bos taurus | CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) | Benas, P., Dumas, P. | Unique |
| 1JBR | FR3D | 61 | 26 | 2.2 | 10/26/2001 | Aspergillus restrictus | Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor | Yang, X., Gerczei, T., Glover, L., Correll, C.C. | Unique |
| 1SER | FR3D | 61 | 24 | 2.9 | 4/30/1994 | Thermus thermophilus | THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER | Biou, S., Cusack, V., Yaremchuk, A., Tukalo, M. | Unique |
| 1X9K | FR3D | 61 | 26 | 3.2 | 11/22/2005 | | An all-RNA Hairpin Ribozyme with mutation U39C | Alam, S., Grum-Tokars, V., Krucinska, J., Kundracik, M.L., Wedekind, J.E. | Unique |
| 2RFK | FR3D | 61 | 24 | 2.9 | 2/5/2008 | Pyrococcus furiosus | Substrate RNA Positioning in the Archaeal H/ACA Ribonucleoprotein Complex | Liang, B., Xue, S., Terns, R.M., Terns, M.P., Li, H., Southeast Collaboratory for Structural Genomics (SECSG) | Unique |
| 1F7V | FR3D | 60 | 21 | 2.9 | 6/27/2001 | Saccharomyces cerevisiae | CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG | Delagoutte, B., Moras, D., Cavarelli, J. | 1F7U |
| 1ZFV | FR3D | 60 | 27 | 2.4 | 2/14/2006 | | The structure of an all-RNA minimal Hairpin Ribozyme with Mutation G8A at the cleavage site | Wedekind, J.E. | 1ZFX |
| 2IPY | FR3D | 60 | 24 | 2.8 | 1/9/2007 | Oryctolagus cuniculus | crystal structure of iron regulatory protein 1 in complex with ferritin H IRE-RNA | Walden, W.E., Selezneva, A.I., Dupuy, J., Volbeda, A., Fontecilla-Camps, J.C., Theil, E.C., Volz, K. | Unique |
| 2P7D | FR3D | 60 | 28 | 2.3 | 5/22/2007 | | A Minimal, 'Hinged' Hairpin Ribozyme Construct Solved with Mimics of the Product Strands at 2.25 Angstroms Resolution | Torelli, A.T., Krucinska, J., Wedekind, J.E. | Unique |
| 3BBK | FR3D | 60 | 29 | 2.8 | 8/12/2008 | | Miminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active Site | MacElrevey, C., Krucinska, J., Wedekind, J.E. | 3B58 3CQS |
| 1X9C | FR3D | 59 | 28 | 2.2 | 11/22/2005 | | An all-RNA Hairpin Ribozyme with mutation U39C | Alam, S., Grum-Tokars, V., Krucinska, J., Kundracik, M.L., Wedekind, J.E. | 2BCY 2FGP |
| 2D2K | FR3D | 59 | 27 | 2.7 | 11/1/2005 | | Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozyme | Alam, S., Grum-Tokars, V., Krucinska, J., Kundracik, M.L., Wedekind, J.E. | Unique |
| 2OEU | FR3D | 59 | 24 | 2.0 | 2/20/2007 | | Full-length hammerhead ribozyme with Mn(II) bound | Martick, M., Scott, W.G. | 2GOZ |
| 2OUE | FR3D | 59 | 28 | 2.0 | 3/6/2007 | | Crystal structure of a junctionless all-RNA hairpin ribozyme at 2.05 angstroms resolution | Wedekind, J.E. | 2P7E 2P7F |
| 364D | FR3D | 59 | 24 | 3.0 | 1/2/1998 | Escherichia coli | 3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA | Correll, C.C., Freeborn, B., Moore, P.B., Steitz, T.A. | 357D |
| 3B5F | FR3D | 59 | 29 | 2.7 | 8/12/2008 | | Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active Site | MacElrevey, C., Krucinska, J., Wedekind, J.E. | 3B5A 3B91 3BBM 3CR1 |
| 1JBT | FR3D | 58 | 22 | 2.7 | 10/26/2001 | Aspergillus restrictus | CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG | Yang, X., Gerczei, T., Glover, L., Correll, C.C. | Unique |
| 1OOA | FR3D | 58 | 18 | 2.5 | 7/22/2003 | Mus musculus | CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER | Huang, D.B., Vu, D., Cassiday, L.A., Zimmerman, J.M., Maher III, L.J., Ghosh, G. | Unique |
| 1ZFT | FR3D | 58 | 27 | 2.3 | 2/14/2006 | | The crystal structure of an all-RNA minimal Hairpin Ribozyme with mutant G8I at the cleavage site | Wedekind, J.E. | 2BCZ |
| 1ZZ5 | FR3D | 58 | 23 | 3.0 | 9/20/2005 | | Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative | Zhao, Q., Zhao, F., Blount, K.F., Han, Q., Tor, Y., Hermann, T. | 2A04 |
| 2D2L | FR3D | 58 | 26 | 2.5 | 11/1/2005 | | Crystal Structure of a minimal, all-RNA hairpin ribozyme with a propyl linker (C3) at position U39 | Alam, S., Grum-Tokars, V., Krucinska, J., Kundracik, M.L., Wedekind, J.E. | Unique |
| 3B5S | FR3D | 58 | 28 | 2.3 | 8/12/2008 | | Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active Site | MacElrevey, C., Krucinska, J., Wedekind, J.E. | 3BBI |
| 1DK1 | FR3D | 57 | 24 | 2.8 | 4/2/2000 | Thermus thermophilus | DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX | Nikulin, A., Serganov, A., Ennifar, E., Tischenko, S., Nevskaya, N. | 1F7Y 1KUQ |
| 1QC0 | FR3D | 57 | 28 | 1.5 | 11/11/1999 | | CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX | Klosterman, P.S., Shah, S.A., Steitz, T.A. | Unique |
| 2DLC | FR3D | 57 | 19 | 2.4 | 6/12/2007 | Saccharomyces cerevisiae | Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase | Tsunoda, M., Kusakabe, Y., Tanaka, N., Nakamura, K.T. | Unique |
| 2HVY | FR3D | 57 | 21 | 2.3 | 9/12/2006 | Pyrococcus furiosus | Crystal structure of an H/ACA box RNP from Pyrococcus furiosus | Ye, K. | Unique |
| 2EZ6 | FR3D | 56 | 26 | 2.0 | 2/7/2006 | Aquifex aeolicus | Crystal structure of Aquifex aeolicus RNase III (D44N) complexed with product of double-stranded RNA processing | Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X. | Unique |
| 2NRE | FR3D | 56 | 18 | 4.0 | 5/15/2007 | Escherichia coli K12 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | Hur, S., Stroud, R.M. | Unique |
| 2NUF | FR3D | 56 | 26 | 2.5 | 11/20/2007 | Aquifex aeolicus | Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.5-Angstrom Resolution | Gan, J.H., Shaw, G., Tropea, J.E., Waugh, D.S., Court, D.L., Ji, X. | Unique |
| 1MZP | FR3D | 55 | 26 | 2.7 | 1/21/2003 | Sulfolobus acidocaldarius | Structure of the L1 protuberance in the ribosome | Nikulin, A., Eliseikina, I., Tishchenko, S., Nevskaya, N., Davydova, N., Platonova, O., Piendl, W., Selmer, M., Liljas, A., Zimmermann, R., Garber, M., Nikonov, S. | Unique |
| 1URN | FR3D | 55 | 13 | 1.9 | 3/8/1996 | Homo sapiens | U1A MUTANT/RNA COMPLEX + GLYCEROL | Oubridge, C., Ito, N., Evans, P.R., Teo, C.-H., Nagai, K. | Unique |
| 2FK6 | FR3D | 53 | 19 | 2.9 | 3/21/2006 | Bacillus subtilis | Crystal Structure of RNAse Z/tRNA(Thr) complex | Li de la Sierra-Gallay, I., Mathy, N., Pellegrini, O., Condon, C. | Unique |
| 3E5C | FR3D | 52 | 21 | 2.3 | 10/7/2008 | | Crystal Structure of the SMK box (SAM-III) Riboswitch with SAM | Lu, C. | 3E5E 3E5F |
| 1R3E | FR3D | 50 | 20 | 2.1 | 11/4/2003 | Thermotoga maritima | Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit | Pan, H., Agarwalla, S., Moustakas, D.T., Finer-Moore, J., Stroud, R.M. | Unique |
| 2B3J | FR3D | 50 | 15 | 2.0 | 1/24/2006 | Staphylococcus aureus subsp. aureus Mu50 | Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA | Losey, H.C., Ruthenburg, A.J., Verdine, G.L. | Unique |
| 2F8T | FR3D | 50 | 24 | 3.1 | 10/31/2006 | Aquifex aeolicus | Crystal structure of Aa-Ago with externally-bound siRNA | Yuan, Y.R., Chen, H.Y., Patel, D.J. | Unique |
| 1E8O | FR3D | 49 | 18 | 3.2 | 11/8/2000 | HOMO SAPIENS | CORE OF THE ALU DOMAIN OF THE MAMMALIAN SRP | Weichenrieder, O., Wild, K., Strub, K., Cusack, S. | Unique |
| 2PXB | FR3D | 49 | 22 | 2.0 | 8/7/2007 | Escherichia coli | Variant 2 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle | Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S. | 1DUL 1HQ1 2PXD 2PXE 2PXF 2PXK 2PXL 2PXP 2PXQ 2PXT 2PXU 2PXV |
| 1A9N | FR3D | 48 | 12 | 2.4 | 9/23/1998 | Homo sapiens | CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA | Price, S.R., Evans, P.R., Nagai, K. | Unique |
| 1SDR | FR3D | 48 | 24 | 2.6 | 2/27/1995 | | CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE | Schindelin, H., Zhang, M., Bald, R., Fuerste, J.-P., Erdmann, V.A., Heinemann, U. | Unique |
| 1YYK | FR3D | 48 | 24 | 2.5 | 11/22/2005 | Aquifex aeolicus | Crystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution | Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X. | 1YYO |
| 1Z7F | FR3D | 48 | 16 | 2.1 | 10/18/2005 | | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | Gherghe, C.M., Krahn, J.M., Weeks, K.M. | Unique |
| 280D | FR3D | 48 | 24 | 2.4 | 9/30/1996 | | THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES | Lietzke, S.E., Barnes, C.L., Kundrot, C.E. | Unique |
| 429D | FR3D | 48 | 18 | 2.7 | 3/1/1999 | | CRYSTAL STRUCTURE OF A LEADZYME; METAL BINDING AND IMPLICATIONS FOR CATALYSIS | Wedekind, J. E., McKay, D. B. | Unique |
| 2NPY | FR3D | 47 | 16 | 2.7 | 8/14/2007 | | Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1 | MacElrevey, C., Krucinska, J., Wedekind, J.E. | 2NPZ |
| 1O3Z | FR3D | 46 | 23 | 2.7 | 5/27/2003 | | HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED | Ennifar, E., Walter, P., Dumas, P. | 1NLC 1WVD 1Y90 3DVV |
| 1XJR | FR3D | 46 | 18 | 2.7 | 2/1/2005 | | The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome | Robertson, M.P., Igel, H., Baertsch, R., Haussler, D., Ares Jr., M., Scott, W.G. | Unique |
| 1XP7 | FR3D | 46 | 20 | 2.5 | 10/18/2005 | | HIV-1 subtype F genomic RNA Dimerization Initiation Site | Ennifar, E., Dumas, P. | 1XPF 2B8S |
| 1XPE | FR3D | 46 | 20 | 1.9 | 10/18/2005 | | HIV-1 subtype B genomic RNA Dimerization Initiation Site | Ennifar, E., Dumas, P. | 2B8R |
| 1Y73 | FR3D | 46 | 23 | 2.9 | 12/21/2004 | | HIV-1 Dis(Mal) Duplex Pt-Soaked | Ennifar, E., Walter, P., Dumas, P. | 1Y6S 1Y6T 1Y95 1Y99 |
| 2NUE | FR3D | 46 | 21 | 2.9 | 11/20/2007 | Aquifex aeolicus | Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.9-Angstrom Resolution | Gan, J.H., Shaw, G., Tropea, J.E., Waugh, D.S., Court, D.L., Ji, X. | Unique |
| 2OIJ | FR3D | 46 | 20 | 2.3 | 2/13/2007 | | HIV-1 subtype B DIS RNA extended duplex AuCl3 soaked | Ennifar, E., Walter, P., Dumas, P. | 2OIY 2OJ0 |
| 2PLY | FR3D | 46 | 20 | 2.6 | 11/6/2007 | Moorella thermoacetica | Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. | Soler, N., Fourmy, D., Yoshizawa, S. | 2UWM |
| 2QEK | FR3D | 46 | 20 | 1.8 | 5/6/2008 | | HIV-1 subtype F DIS RNA extended duplex form | Freisz, S., Ennifar, E., Dumas, P. | Unique |
| 462D | FR3D | 46 | 22 | 2.3 | 12/2/1999 | | CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE | Ennifar, E., Yusupov, M., Walter, P., Marquet, R., Ehresmann, C., Ehresmann, B., Dumas, P. | 3C44 |
| 1YRJ | FR3D | 45 | 18 | 2.7 | 6/7/2005 | | Crystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotide | Han, Q., Zhao, Q., Fish, S., Simonsen, K.B., Vourloumis, D., Froelich, J.M., Wall, D., Hermann, T. | Unique |
| 1YY0 | FR3D | 45 | 14 | 3.2 | 10/18/2005 | | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | Gherghe, C.M., Krahn, J.M., Weeks, K.M. | 1Z79 |
| 1YZD | FR3D | 45 | 14 | 2.3 | 10/18/2005 | | Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair | Gherghe, C.M., Krahn, J.M., Weeks, K.M. | Unique |
| 2I91 | FR3D | 45 | 14 | 2.7 | 10/17/2006 | Xenopus laevis | 60kDa Ro autoantigen in complex with a fragment of misfolded RNA | Reinisch, K.M., Stein, A.J. | Unique |
| 1QCU | FR3D | 44 | 33 | 1.2 | 11/11/1999 | | CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX | Klosterman, P.S., Shah, S.A., Steitz, T.A. | Unique |
| 1RLG | FR3D | 44 | 18 | 2.7 | 6/1/2004 | Archaeoglobus fulgidus | Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex | Moore, T., Zhang, Y., Fenley, M.O., Li, H. | Unique |
| 1Y3O | FR3D | 44 | 18 | 2.7 | 11/8/2005 | | HIV-1 DIS RNA subtype F- Mn soaked | Ennifar, E., Dumas, P. | 1Y3S 1YXP 2FCX 2FCY 2FD0 |
| 1YVP | FR3D | 44 | 10 | 2.2 | 6/7/2005 | Xenopus laevis | Ro autoantigen complexed with RNAs | Stein, A.J., Fuchs, G., Fu, C., Wolin, S.L., Reinisch, K.M. | Unique |
| 1YZ9 | FR3D | 44 | 18 | 2.1 | 11/22/2005 | Aquifex aeolicus | Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution | Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X. | Unique |
| 2ESI | FR3D | 44 | 16 | 3.0 | 12/20/2005 | | Complex between Kanamycin A and the 16S-Rrna A Site. | Westhof, E. | Unique |
| 2F4T | FR3D | 44 | 17 | 3.0 | 5/2/2006 | | Asite RNA + designer antibiotic | Murray, J.B., Meroueh, S.O., Russell, R.J., Lentzen, G., Haddad, J., Mobashery, S. | Unique |
| 2F8S | FR3D | 44 | 19 | 3.0 | 10/31/2006 | Aquifex aeolicus | Crystal structure of Aa-Ago with externally-bound siRNA | Yuan, Y.R., Chen, H.Y., Patel, D.J. | Unique |
| 2G5K | FR3D | 44 | 18 | 2.8 | 6/20/2006 | | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin | Kondo, J., Francois, B., Urzhumtsev, A., Westhof, E. | Unique |
| 2NUG | FR3D | 44 | 20 | 1.7 | 11/20/2007 | Aquifex aeolicus | Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom Resolution | Gan, J.H., Shaw, G., Tropea, J.E., Waugh, D.S., Court, D.L., Ji, X. | Unique |
| 2Q1O | FR3D | 44 | 20 | 1.1 | 10/30/2007 | | Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2) | Li, F., Pallan, P.S. | Unique |
| 3BNL | FR3D | 44 | 20 | 2.6 | 6/24/2008 | | Crystal structure of the bacterial ribosomal decoding A site in the presence of [Co(NH3)6]Cl3 | Kondo, J., Westhof, E. | Unique |
| 3FTF | FR3D | 44 | 21 | 2.8 | 3/24/2009 | Aquifex aeolicus VF5 | Crystal structure of A. aeolicus KsgA in complex with RNA and SAH | Tu, C., Ji, X. | 3FTE |
| 2FQN | FR3D | 43 | 18 | 2.3 | 2/14/2006 | | Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site | Kondo, J., Urzhumtsev, A., Westhof, E. | 2O3W 2O3Y |
| 2O3V | FR3D | 43 | 17 | 2.8 | 11/6/2007 | | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with paromamine derivative NB33 | Kondo, J., Hainrichson, M., Nudelman, I., Shallom-Shezifi, D., Baasov, T., Westhof, E. | Unique |
| 3B31 | FR3D | 43 | 16 | 2.4 | 12/25/2007 | | Crystal structure of domain III of the Cricket Paralysis Virus IRES RNA | Kieft, J.S., Costantino, D.A., Pfingsten, J.S., Rambo, R.P. | Unique |
| 3BNP | FR3D | 43 | 16 | 2.7 | 6/24/2008 | | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant) | Kondo, J., Westhof, E. | Unique |
| 1J7T | FR3D | 42 | 16 | 2.5 | 5/18/2002 | | Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution | Vicens, Q., Westhof, E. | Unique |
| 1KH6 | FR3D | 42 | 16 | 2.9 | 4/26/2002 | | Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation. | Kieft, J.S., Zhou, K., Grech, A., Jubin, R, Doudna, J.A. | Unique |
| 1MWL | FR3D | 42 | 18 | 2.4 | 2/18/2003 | | Crystal structure of geneticin bound to the eubacterial 16S rRNA A site | Vicens, Q., Westhof, E. | 1LC4 2BE0 2BEE 2ESJ 2ET3 2ET4 2ET5 2G5Q |
| 1O9M | FR3D | 42 | 17 | 2.4 | 3/27/2003 | | THE COMPLEX OF A NOVEL ANTIBIOTIC WITH THE AMINOACYL SITE OF THE BACTERIAL RIBOSOME REVEALED BY X-RAY CRYSTALLOGRAPHY. | Russell, R., Murray, J.B. | 2ET8 2F4U |
| 1RPU | FR3D | 42 | 19 | 2.5 | 1/13/2004 | Carnation Italian ringspot virus | Crystal Structure of CIRV p19 bound to siRNA | Vargason, J.M., Szittya, G., Burgyan, J., Hall, T.M.T. | Unique |
| 1ZE2 | FR3D | 42 | 16 | 3.0 | 4/26/2005 | Thermotoga maritima | Conformational change of pseudouridine 55 synthase upon its association with RNA substrate | Phannachet, K., Huang, R.H. | Unique |
| 2O3X | FR3D | 42 | 17 | 2.9 | 11/6/2007 | | Crystal Structure of the Prokaryotic Ribosomal Decoding Site Complexed with Paromamine Derivative NB30 | Kondo, J., Hainrichson, M., Nudelman, I., Shallom-Shezifi, D., Baasov, T., Westhof, E. | 2F4S |
| 2PN3 | FR3D | 42 | 16 | 2.9 | 4/1/2008 | | Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | Zhao, Q., Han, Q., Kissinger, C.R., Hermann, T., Thompson, P.A. | Unique |
| 2PWT | FR3D | 42 | 17 | 1.8 | 9/18/2007 | | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | Kondo, J., Pachamuthu, K., Francois, B., Szychowski, J., Hanessian, S., Westhof, E. | Unique |
| 2ZKO | FR3D | 42 | 18 | 1.7 | 10/14/2008 | Influenza A virus | Structural basis for dsRNA recognition by NS1 protein of human influenza virus A | Yuan, Y.A. | Unique |
| 409D | FR3D | 42 | 18 | 2.5 | 1/13/1999 | | CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES | Pan, B., Mitra, S.N., Sun, L., Hart, D., Sundaralingam, M. | Unique |
| 299D | FR3D | 41 | 17 | 3.0 | 1/24/1997 | | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME | Scott, W.G., Murray, J.B., Arnold, J.R.P., Stoddard, B.L., Klug, A. | 1NYI 1Q29 300D 301D 359D 379D |
| 1DI2 | FR3D | 40 | 10 | 1.9 | 12/2/1999 | Xenopus laevis | CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS | Ryter, J.M., Schultz, S.C. | Unique |
| 1EC6 | FR3D | 40 | 9 | 2.4 | 2/21/2000 | Homo sapiens | CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN | Lewis, H.A., Musunuru, K., Jensen, K.B., Edo, C., Chen, H. | Unique |
| 1NTA | FR3D | 40 | 15 | 2.9 | 5/13/2003 | | 2.9 A crystal structure of Streptomycin RNA-aptamer | Tereshko, V., Skripkin, E., Patel, D.J. | 1NTB |
| 1RC7 | FR3D | 40 | 20 | 2.2 | 3/30/2004 | Aquifex aeolicus | Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution | Blaszczyk, J., Gan, J., Ji, X. | Unique |
| 1SA9 | FR3D | 40 | 16 | 2.9 | 5/18/2004 | | Crystal Structure of the RNA octamer GGCGAGCC | Jang, S.B., Baeyens, K., Jeong, M.S., SantaLucia Jr, J., Turner, D., Holbrook, S.R. | Unique |
| 361D | FR3D | 40 | 10 | 3.0 | 7/1/1998 | | CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP | Perbandt, M., Nolte, A., Lorenz, S., Erdmann, V.A., Betzel, C. | Unique |
| 2AWE | FR3D | 39 | 24 | 2.1 | 2/7/2006 | | Base-Tetrad Swapping Results in Dimerization of RNA Quadruplexes: Implications for Formation of I-Motif RNA Octaplex | Pan, B., Shi, K., Sundaralingam, M. | Unique |
| 1DFU | FR3D | 38 | 15 | 1.8 | 12/2/1999 | Escherichia coli | CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION | Lu, M., Steitz, T.A. | Unique |
| 1Q2R | FR3D | 38 | 13 | 2.9 | 9/9/2003 | Zymomonas mobilis | Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate | Xie, W., Liu, X., Huang, R.H. | 1Q2S |
| 1R9F | FR3D | 38 | 19 | 1.9 | 1/27/2004 | Tomato bushy stunt virus | Crystal structure of p19 complexed with 19-bp small interfering RNA | Ye, K., Malinina, L., Patel, D.J. | Unique |
| 1ZDK | FR3D | 38 | 12 | 2.9 | 12/7/1998 | Enterobacterio phage MS2 | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | Grahn, E., Stonehouse, N.J., Valegard, K., Vandenworm, S., Liljas, L. | Unique |
| 2ZI0 | FR3D | 38 | 18 | 2.8 | 7/22/2008 | Tomato aspermy virus | Crystal structure of Tav2b/siRNA complex | Yuan, Y.A., Chen, H.-Y. | Unique |
| 1XOK | FR3D | 36 | 13 | 3.0 | 1/4/2005 | | crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide | Guogas, L.M., Filman, D.J., Hogle, J.M., Gehrke, L. | Unique |
| 1ZEV | FR3D | 36 | 13 | 1.6 | 10/25/2005 | | Crystal Structure of a Pathogenic RNA: CUG Repeats | Mooers, B.H., Logue, J.S., Berglund, J.A. | Unique |
| 2AO5 | FR3D | 36 | 16 | 2.1 | 3/28/2006 | | Crystal structure of an RNA duplex r(GGCGBrUGCGCU)2 with terminal and internal tandem G-U base pairs | Utsunomiya, R., Suto, K., Balasundaresan, D., Fukamizu, A., Kumar, P.K., Mizuno, H. | Unique |
| 2BQ5 | FR3D | 36 | 12 | 2.9 | 3/22/2006 | BACTERIOPHAGE MS2 | MS2 (N87AE89K MUTANT) - RNA HAIRPIN COMPLEX | Horn, W.T., Tars, K., Grahn, E., Helgstrand, C., Baron, A.J., Lago, H., Adams, C.J., Peabody, D.S., Phillips, S.E.V., Stonehouse, N.J., Liljas, L., Stockley, P.G. | Unique |
| 2HW8 | FR3D | 36 | 17 | 2.1 | 12/19/2006 | Thermus thermophilus | Structure of ribosomal protein L1-mRNA complex at 2.1 resolution. | Tishchenko, S., Nikonova, E., Nikulin, A., Nevskaya, N., Volchkov, S., Piendl, W., Garber, M., Nikonov, S. | Unique |
| 3BT7 | FR3D | 36 | 11 | 2.4 | 4/29/2008 | Escherichia coli | Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue | Alian, A., Stroud, R.M., Finer-Moore, J. | Unique |
| 1SAQ | FR3D | 35 | 12 | 2.7 | 5/18/2004 | | Crystal Structure of the RNA octamer GIC(GA)GCC | Jang, S.B., Baeyens, K., Jeong, M.S., SantaLucia Jr, J., Turner, D., Holbrook, S.R. | Unique |
| 1T0E | FR3D | 35 | 15 | 1.7 | 6/15/2004 | | Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA | Shandrick, S., Zhao, Q., Han, Q., Ayida, B.K., Takahashi, M., Winters, G.C., Simonsen, K.B., Vourloumis, D., Hermann, T. | Unique |
| 1E7K | FR3D | 34 | 14 | 2.9 | 2/19/2001 | HOMO SAPIENS | CRYSTAL STRUCTURE OF THE SPLICEOSOMAL 15.5KD PROTEIN BOUND TO A U4 SNRNA FRAGMENT | Vidovic, I., Nottrott, S., Harthmuth, K., Luhrmann, R., Ficner, R. | Unique |
| 1JBS | FR3D | 34 | 12 | 2.0 | 10/26/2001 | Aspergillus restrictus | Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog | Yang, X., Gerczei, T., Glover, L., Correll, C.C. | Unique |
| 5MSF | FR3D | 34 | 11 | 2.8 | 11/11/1998 | Enterobacterio phage MS2 | MS2 PROTEIN CAPSID/RNA COMPLEX | Rowsell, S., Stonehouse, N.J., Convery, M.A., Adams, C.J., Ellington, A.D., Hirao, I., Peabody, D.S., Stockley, P.G., Phillips, S.E.V. | Unique |
| 1F1T | FR3D | 33 | 14 | 2.8 | 9/4/2000 | | CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE | Baugh, C., Grate, D., Wilson, C. | Unique |
| 2DR7 | FR3D | 33 | 13 | 2.8 | 11/14/2006 | Archaeoglobus fulgidus | Complex structure of CCA-adding enzyme with tRNAminiDC | Tomita, K., Ishitani, R., Fukai, S., Nureki, O. | 2DR5 2DR8 2DR9 2DRA 2DRB 2DVI 2ZH1 2ZH2 2ZH3 2ZH4 2ZH5 2ZH6 2ZH7 2ZH8 2ZH9 2ZHA 2ZHB |
| 2OE5 | FR3D | 33 | 14 | 1.5 | 2/13/2007 | | 1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang | Hermann, T., Tereshko, V., Skripkin, E., Patel, D.J. | Unique |
| 2OE6 | FR3D | 33 | 14 | 2.4 | 2/13/2007 | | 2.4A X-ray crystal structure of unliganded RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang | Hermann, T., Tereshko, V., Skripkin, E., Patel, D.J. | 2OE8 |
| 3GCA | FR3D | 33 | 15 | 2.8 | 3/3/2009 | | The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain | Spitale, R.C., Wedekind, J.E. | Unique |
| 1J9H | FR3D | 32 | 16 | 1.4 | 10/26/2001 | | Crystal Structure of an RNA Duplex with Uridine Bulges | Xiong, Y., Deng, J., Sudarsanakumar, C., Sundaralingam, M. | Unique |
| 1ZBH | FR3D | 32 | 10 | 3.0 | 9/26/2006 | Homo sapiens | 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease | Cheng, Y., Patel, D.J. | Unique |
| 2BU1 | FR3D | 32 | 12 | 2.2 | 8/18/2005 | BACTERIOPHAGE MS2 | MS2-RNA HAIRPIN (5BRU-5) COMPLEX | Grahn, E., Moss, T., Helgstrand, C., Fridborg, K., Sundaram, M., Tars, K., Lago, H., Stonehouse, N.J., Davis, D.R., Stockley, P.G., Liljas, L. | 2C4Q |
| 2G32 | FR3D | 32 | 16 | 1.3 | 5/30/2006 | | Crystal structure of an RNA racemate | Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A. | 2GPM 2GQ4 2GQ5 2GQ6 2GQ7 |
| 2GRB | FR3D | 32 | 31 | 1.4 | 11/21/2006 | | Crystal Structure of an RNA Quadruplex Containing Inosine-tetrad | Pan, B., Shi, K., Sundaralingam, M. | Unique |
| 405D | FR3D | 32 | 16 | 2.5 | 1/13/1999 | | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | Pan, M.Sundaralingam B., Mitra, S.N. | Unique |
| 420D | FR3D | 32 | 16 | 1.9 | 1/13/1999 | | CRYSTAL STRUCTURE OF A 16-MER RNA DUPLEX WITH NON-ADJACENT A(ANTI).G(SYN) MISMATCHES | Pan, B., Mitra, S.N., Sundaralingam, M. | Unique |
| 1U1Y | FR3D | 31 | 11 | 2.8 | 12/7/2004 | Enterobacterio phage MS2 | Crystal structure of a complex between WT bacteriophage MS2 coat protein and an F5 aptamer RNA stemloop with 2aminopurine substituted at the-10 position | Horn, W.T., Convery, M.A., Stonehouse, N.J., Adams, C.J., Liljas, L., Phillips, S.E., Stockley, P.G. | Unique |
| 1AQ4 | FR3D | 30 | 10 | 3.0 | 12/24/1997 | Enterobacterio phage MS2 | STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR | Van Den Worm, L.Liljas S., Stonehouse, N., Valegard, K. | Unique |
| 1F27 | FR3D | 30 | 14 | 1.3 | 6/12/2000 | | CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT | Nix, J., Sussman, D., Wilson, C. | Unique |
| 1JZV | FR3D | 30 | 15 | 1.7 | 11/11/2003 | | Crystal structure of a bulged RNA from the SL2 stem-loop of the HIV-1 psi-RNA | Xiong, Y., Sudarsanakumar, C., Deng, J., Pan, B., Sundaralingam, M. | Unique |
| 2AZ0 | FR3D | 30 | 12 | 2.6 | 10/11/2005 | Flock house virus | Flock House virus B2-dsRNA Complex (P212121) | Chao, J.A., Lee, J.H., Chapados, B.R., Debler, E.W., Schneemann, A., Williamson, J.R. | 2AZ2 |
| 2B2E | FR3D | 30 | 9 | 3.2 | 5/9/2006 | Enterobacterio phage MS2 | RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid | Horn, W.T., Tars, K., Grahn, E., Helgstrand, C., Baron, A.J., Lago, H., Adams, C.J., Peabody, D.S., Phillips, S.E.V., Stonehouse, N.J., Liljas, L., Stockley, P.G. | 2B2G |
| 2EC0 | FR3D | 30 | 14 | 2.8 | 6/26/2007 | Foot-and-mouth disease virus C-S8c1 | RNA-dependent RNA polymerase of foot-and-mouth disease virus in complex with a template-primer RNA and ATP | Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N. | Unique |
| 2H1M | FR3D | 30 | 12 | 2.9 | 7/18/2006 | | Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs | Serganov, A.A. | Unique |
| 1ZDI | FR3D | 29 | 9 | 2.7 | 4/21/1997 | Enterobacterio phage MS2 | RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX | K.Valegard, S.Van Den Worm, L.Liljas | Unique |
| 2BGG | FR3D | 29 | 10 | 2.2 | 3/31/2005 | ARCHAEOGLOBUS FULGIDUS | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX. | Parker, J.S., Roe, S.M., Barford, D. | Unique |
| 2BH2 | FR3D | 29 | 5 | 2.2 | 3/30/2005 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SUBSTRATE AND S-ADENOSYLHOMOCYSTEINE. | Lee, T.T., Agarwalla, S., Stroud, R.M. | Unique |
| 2IZ8 | FR3D | 29 | 9 | 3.3 | 7/27/2006 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (C-7) COMPLEX | Helgstrand, C., Grahn, E., Stonehouse, N.J., Stockley, P.G., Liljas, L. | Unique |
| 3FU4 | FR3D | 29 | 13 | 2.2 | 3/3/2009 | | Cocrystal structure of a mutant class-I preQ1 riboswitch | Klein, D.J., Edwards, T.E., Ferre-D'Amare, A.R. | Unique |
| 1CSL | FR3D | 28 | 11 | 1.6 | 2/14/2000 | | CRYSTAL STRUCTURE OF THE RRE HIGH AFFINITY SITE | Ippolito, J.A., Steitz, T.A. | Unique |
| 1RNA | FR3D | 28 | 14 | 2.3 | 4/15/1991 | | CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2 | Dock-Bregeon, A.C., Chevrier, B., Podjarny, A., Johnson, J., De Bear, J.S., Gough, G.R., Gilham, P.T., Moras, D. | Unique |
| 2BNY | FR3D | 28 | 9 | 3.0 | 3/22/2006 | ENTEROBACTERIO PHAGE MS2 | MS2 (N87A MUTANT) - RNA HAIRPIN COMPLEX | Horn, W.T., Tars, K., Grahn, E., Helgstrand, C., Baron, A.J., Lago, H., Adams, C.J., Peabody, D.S., Phillips, S.E.V., Stonehouse, N.J., Liljas, L., Stockley, P.G. | 1AQ3 2IZ9 |
| 2C4Y | FR3D | 28 | 10 | 2.7 | 1/5/2006 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX | Grahn, E., Moss, T., Helgstrand, C., Fridborg, K., Sundaram, M., Tars, K., Lago, H., Stonehouse, N.J., Davis, D.R., Stockley, P.G., Liljas, L. | Unique |
| 2C51 | FR3D | 28 | 9 | 2.8 | 1/5/2006 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (G -5) COMPLEX | Grahn, E., Moss, T., Helgstrand, C., Fridborg, K., Sundaram, M., Tars, K., Lago, H., Stonehouse, N.J., Davis, D.R., Stockley, P.G., Liljas, L. | Unique |
| 2E9T | FR3D | 28 | 12 | 2.6 | 6/26/2007 | Foot-and-mouth disease virus C-S8c1 | Foot-and-mouth disease virus RNA-polymerase RNA dependent in complex with a template-primer RNA and 5F-UTP | Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N. | Unique |
| 2VAL | FR3D | 28 | 14 | 2.0 | 10/16/2007 | | CRYSTAL STRUCTURE OF AN ESCHERICHIA COLI TRNAGLY MICROHELIX AT 2.0 ANGSTROM RESOLUTION | Forster, C., Brauer, A.B.E., Perbandt, M., Lehmann, D., Furste, J.P., Betzel, C., Erdmann, V.A. | Unique |
| 430D | FR3D | 28 | 10 | 2.1 | 10/7/1998 | | STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA | Correll, C.C., Munishkin, A., Chan, Y-L., Ren, Z., Wool, I.G., Steitz, T.A. | Unique |
| 433D | FR3D | 28 | 14 | 2.1 | 12/4/1998 | | CRYSTAL STRUCTURE OF A 14 BASE PAIR RNA DUPLEX WITH NONSYMMETRICAL TANDEM G.U WOBBLE BASE PAIRS | Trikha, J., Filman, D.J., Hogle, J.M. | Unique |
| 434D | FR3D | 28 | 14 | 1.2 | 6/14/1999 | | 5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | Mueller, U., Schuebel, H., Sprinzl, M., Heinemann, U. | 466D |
| 435D | FR3D | 28 | 14 | 1.4 | 6/14/1999 | | 5'-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | Mueller, U., Schuebel, H., Sprinzl, M., Heinemann, U. | Unique |
| 1L2X | FR3D | 27 | 14 | 1.3 | 3/22/2002 | | Atomic Resolution Crystal Structure of a Viral RNA Pseudoknot | Egli, M., Minasov, G., Su, L., Rich, A. | 1L3D 2A43 437D |
| 1MSY | FR3D | 27 | 10 | 1.4 | 2/25/2003 | | GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA | Correll, C.C., Swinger, K. | 1Q9A 3DVZ 3DW4 3DW5 3DW6 3DW7 480D 483D |
| 1T0K | FR3D | 27 | 11 | 3.2 | 7/20/2004 | Saccharomyces cerevisiae | Escherichia coli | Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex | Chao, J.A., Williamson, J.R. | Unique |
| 2B63 | FR3D | 27 | 5 | 3.8 | 12/6/2005 | Saccharomyces cerevisiae | Complete RNA Polymerase II-RNA inhibitor complex | Kettenberger, H., Eisenfuehr, A., Brueckner, F., Theis, M., Famulok, M., Cramer, P. | Unique |
| 2C50 | FR3D | 27 | 8 | 2.7 | 1/5/2006 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (A -5) COMPLEX | Grahn, E., Moss, T., Helgstrand, C., Fridborg, K., Sundaram, M., Tars, K., Lago, H., Stonehouse, N.J., Davis, D.R., Stockley, P.G., Liljas, L. | Unique |
| 397D | FR3D | 27 | 11 | 1.3 | 9/11/1998 | | A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATION | Ippolito, J.A., Steitz, T.A. | Unique |
| 1FUF | FR3D | 26 | 12 | 1.7 | 11/9/2001 | | CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE | Deng, J., Xiong, Y., Sudarsanakumar, C., Shi, K., Sundaralingam, M. | 1IK5 |
| 1I9X | FR3D | 26 | 12 | 2.2 | 9/5/2001 | | CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX | Berglund, J.A., Rosbash, M., Schultz, S.C. | Unique |
| 1JID | FR3D | 26 | 10 | 1.8 | 10/19/2001 | Homo sapiens | Human SRP19 in complex with helix 6 of Human SRP RNA | Wild, K., Sinning, I., Cusack, S. | Unique |
| 1MHK | FR3D | 26 | 9 | 2.5 | 9/6/2002 | | Crystal Structure Analysis of a 26mer RNA molecule, representing a new RNA motif, the hook-turn | Szep, S., Wang, J., Moore, P.B. | Unique |
| 1ZDH | FR3D | 26 | 8 | 2.7 | 4/21/1997 | Enterobacterio phage MS2 | MS2 COAT PROTEIN/RNA COMPLEX | K.Valegard,S.Van Den Worm,L.Liljas | Unique |
| 2C4Z | FR3D | 26 | 10 | 2.6 | 1/5/2006 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (2SU -5-6) COMPLEX | Grahn, E., Moss, T., Helgstrand, C., Fridborg, K., Sundaram, M., Tars, K., Lago, H., Stonehouse, N.J., Davis, D.R., Stockley, P.G., Liljas, L. | Unique |
| 2IZM | FR3D | 26 | 8 | 2.7 | 7/3/2007 | BACTERIOPHAGE MS2 | MS2-RNA HAIRPIN (C-10) COMPLEX | Helgstrand, C., Grahn, E., Moss, T., Stonehouse, N.J., Tars, K., Stockley, P.G., Liljas, L. | Unique |
| 2IZN | FR3D | 26 | 8 | 2.6 | 7/27/2006 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (G-10) COMPLEX | Helgstrand, C., Grahn, E., Moss, T., Stonehouse, N.J., Tars, K., Stockley, P.G., Liljas, L. | Unique |
| 2R22 | FR3D | 26 | 13 | 1.4 | 9/25/2007 | | Structure of the native RNA tridecamer r(GCGUUUGAAACGC) at 1.5 A (NatMn) | Timsit, Y., Bombard, S. | Unique |
| 387D | FR3D | 26 | 5 | 3.1 | 8/26/2003 | | RNA Pseudoknot with 3D Domain Swapping | Lietzke, S.E., Kundrot, C.E., Barnes, C.L. | Unique |
| 464D | FR3D | 26 | 12 | 1.2 | 8/16/1999 | | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | Mueller, U., Muller, Y.A., Herbst-Irmer, R., Sprinzl, M., Heinemann, U. | Unique |
| 7MSF | FR3D | 25 | 8 | 2.8 | 11/11/1998 | Enterobacterio phage MS2 | MS2 PROTEIN CAPSID/RNA COMPLEX | Rowsell, S., Stonehouse, N.J., Convery, M.A., Adams, C.J., Ellington, A.D., Hirao, I., Peabody, D.S., Stockley, P.G., Phillips, S.E.V. | Unique |
| 157D | FR3D | 24 | 12 | 1.8 | 5/31/1994 | | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | Leonard, G.A., McAuley-Hecht, K.E., Ebel, S., Lough, D.M., Brown, T., Hunter, W.N. | Unique |
| 1J8G | FR3D | 24 | 4 | 0.6 | 11/23/2001 | | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | Deng, J., Xiong, Y., Sundaralingam, M. | Unique |
| 205D | FR3D | 24 | 12 | 2.6 | 9/15/1995 | | STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOP | Baeyens, K.J., De Bondt, H.L., Holbrook, S.R. | Unique |
| 2R1S | FR3D | 24 | 11 | 1.4 | 9/25/2007 | | Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.4 A (Br1) | Timsit, Y., Bombard, S. | 2R20 2R21 |
| 353D | FR3D | 24 | 12 | 2.4 | 11/10/1997 | | CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE | Betzel, C., Lorenz, S., Furste, J.P., Bald, R., Zhang, M., Schneider, T.R., Wilson, K.S., Erdmann, V.A. | Unique |
| 354D | FR3D | 24 | 10 | 1.5 | 11/26/1997 | Escherichia coli | Structure of loop E FROM E. coli 5S RRNA | Correll, C.C., Freeborn, B., Moore, P.B., Steitz, T.A. | Unique |
| 377D | FR3D | 24 | 12 | 1.8 | 8/10/1998 | | 5'-R(*CP*GP*UP*AP*CP*DG)-3' | Biswas, R., Mitra, S.N., Sundaralingam, M. | Unique |
| 398D | FR3D | 24 | 8 | 1.9 | 10/6/1998 | | 3'-DNA-RNA-5' JUNCTION FORMED DURING INITIATION OF MINUS-STRAND SYNTHESIS OF HIV REPLICATION | Mueller, U., Meier, G., Mochi-Onori, A., Cellai, L., Heumann, H. | Unique |
| 3CGP | FR3D | 24 | 10 | 1.6 | 7/1/2008 | | X-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex bound to iodide ions | Lin, Y., Kielkopf, C.L. | 3CGQ |
| 3CGR | FR3D | 24 | 10 | 2.1 | 7/1/2008 | | X-ray structure containing the pseudouridylated U2 snRNA and intron branch site consensus sequences | Lin, Y., Kielkopf, C.L. | Unique |
| 3CGS | FR3D | 24 | 10 | 1.6 | 7/1/2008 | | X-ray structure containing the pseudouridylated U2 snRNA and mammalian intron branch site consensus sequences | Lin, Y., Kielkopf, C.L. | Unique |
| 3CJZ | FR3D | 24 | 10 | 1.8 | 10/14/2008 | | Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m22G:A pairs | Pallan, P.S., Kreutz, C., Bosio, S., Micura, R., Egli, M. | Unique |
| 422D | FR3D | 24 | 8 | 2.6 | 6/3/2003 | | 5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' | Eswaramoorthy, S., Rao, S.T., Sundaralingam, M. | Unique |
| 6MSF | FR3D | 24 | 8 | 2.8 | 7/8/1998 | Enterobacterio phage MS2 | F6 APTAMER MS2 COAT PROTEIN COMPLEX | Convery, M.A., Rowsell, S., Stonehouse, N.J., Ellington, A.D., Hirao, I., Murray, J.B., Peabody, D.S., Phillips, S.E.V., Stockley, P.G. | Unique |
| 2ANN | FR3D | 23 | 6 | 2.3 | 10/24/2006 | Homo sapiens | Crystal structure (I) of Nova-1 KH1/KH2 domain tandem with 25 nt RNA hairpin | Malinina, L., Teplova, M., Musunuru, K., Teplov, A., Darnell, J.C., Burley, S.K., Darnell, R.B., Patel, D.J. | 2ANR |
| 2BS1 | FR3D | 23 | 7 | 2.8 | 3/22/2006 | BACTERIOPHAGE MS2 | MS2 (N87AE89K MUTANT) - QBETA RNA HAIRPIN COMPLEX | Horn, W.T., Tars, K., Grahn, E., Helgstrand, C., Baron, A.J., Lago, H., Adams, C.J., Peabody, D.S., Phillips, S.E.V., Stonehouse, N.J., Liljas, L., Stockley, P.G. | Unique |
| 2PJP | FR3D | 23 | 10 | 2.3 | 10/30/2007 | Escherichia coli | Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA | Soler, N., Fourmy, D., Yoshizawa, S. | Unique |
| 1KD3 | FR3D | 22 | 10 | 1.8 | 3/4/2003 | | The Crystal Structure of r(GGUCACAGCCC)2, Thallium form | Kacer, V., Scaringe, S.A., Scarsdale, J.N., Rife, J.P. | 1KD4 1KD5 |
| 1LNT | FR3D | 22 | 11 | 1.7 | 6/3/2003 | | Crystal Structure of the Highly Conserved RNA Internal Loop of SRP | Deng, J., Xiong, Y., Pan, B., Sundaralingam, M. | Unique |
| 2G92 | FR3D | 22 | 10 | 1.6 | 4/18/2006 | | Crystal Structure Analysis of the RNA Dodecamer CGC-(NF2)-AAUUAGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2) | Egli, M., Li, F. | Unique |
| 2W2H | FR3D | 22 | 3 | 3.3 | 12/9/2008 | EQUINE INFECTIOUS ANEMIA VIRUS | EQUUS CABALLUS | STRUCTURAL BASIS OF TRANSCRIPTION ACTIVATION BY THE CYCLIN T1-TAT-TAR RNA COMPLEX FROM EIAV | Anand, K. | Unique |
| 1K8W | FR3D | 21 | 8 | 1.9 | 12/31/2001 | Escherichia coli | Crystal structure of the E. coli pseudouridine synthase TruB bound to a T stem-loop RNA | Hoang, C., Ferre-D'Amare, A.R. | 1ZL3 |
| 2BS0 | FR3D | 21 | 6 | 2.5 | 3/22/2006 | BACTERIOPHAGE MS2 | MS2 (N87AE89K MUTANT) - VARIANT QBETA RNA HAIRPIN COMPLEX | Horn, W.T., Tars, K., Grahn, E., Helgstrand, C., Baron, A.J., Lago, H., Adams, C.J., Peabody, D.S., Phillips, S.E.V., Stonehouse, N.J., Liljas, L., Stockley, P.G. | Unique |
| 1A34 | FR3D | 20 | 9 | 1.8 | 4/29/1998 | Tobacco necrosis satellite virus | SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX | Larson, S.B., Day, J., Greenwood, A.J., McPherson, A. | Unique |
| 1DQF | FR3D | 19 | 9 | 2.2 | 11/13/2000 | | CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS | Xiong, Y., Sundaralingam, M. | 1DQH |
| 1YTU | FR3D | 19 | 7 | 2.5 | 4/5/2005 | Archaeoglobus fulgidus DSM 4304 | Structural basis for 5'-end-specific recognition of the guide RNA strand by the A. fulgidus PIWI protein | Ma, J.B., Yuan, Y.R., Meister, G., Pei, Y., Tuschl, T., Patel, D.J. | Unique |
| 2AB4 | FR3D | 19 | 7 | 2.4 | 12/13/2005 | Thermotoga maritima | Dissecting the Roles of a Strictly Conserved Tyrosine in Substrate Recognition and Catalysis by Pseudouridine 55 Synthase | Phannachet, K., Elias, Y., Huang, R.H. | Unique |
| 2R92 | FR3D | 19 | 8 | 3.8 | 11/27/2007 | Saccharomyces cerevisiae | Elongation complex of RNA polymerase II with artificial RdRP scaffold | Lehmann, E., Brueckner, F., Cramer, P. | Unique |
| 1YTY | FR3D | 18 | 4 | 2.3 | 1/17/2006 | Homo sapiens | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen | Teplova, M., Yuan, Y.R., Ilin, S., Malinina, L., Phan, A.T., Teplov, A., Patel, D.J. | 1ZH5 |
| 165D | FR3D | 16 | 8 | 1.5 | 8/31/1994 | | THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE | Cruse, W., Saludjian, P., Biala, E., Strazewski, P., Prange, T., Kennard, O. | Unique |
| 1RXB | FR3D | 16 | 8 | 1.8 | 8/26/1996 | | CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES | Portmann, S., Usman, N., Egli, M. | 259D |
| 1ZDJ | FR3D | 16 | 4 | 2.9 | 7/8/1998 | Enterobacterio phage MS2 | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | Grahn, E., Stonehouse, N., Valegard, K., Vandenworm, S., Liljas, L. | Unique |
| 2E9Z | FR3D | 16 | 4 | 3.0 | 6/26/2007 | Foot-and-mouth disease virus C-S8c1 | Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, ATP and UTP | Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N. | Unique |
| 3BSN | FR3D | 16 | 6 | 1.8 | 1/8/2008 | Norwalk virus | Norwalk Virus polymerase bound to 5-nitrocytidine triphosphate and primer-template RNA | Zamyatkin, D.F., Ng, K.K.S. | Unique |
| 3BSO | FR3D | 16 | 7 | 1.7 | 1/8/2008 | Norwalk virus | Norwalk Virus polymerase bound to cytidine 5'-triphosphate and primer-template RNA | Zamyatkin, D.F., Ng, K.K.S. | Unique |
| 3EQT | FR3D | 16 | 8 | 2.0 | 3/10/2009 | Homo sapiens | Crystal structure of human LGP2 C-terminal domain in complex with dsRNA | Li,P., Li,X. | Unique |
| 402D | FR3D | 16 | 6 | 2.3 | 6/16/1998 | | 5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3' | Jang, S.B., Hung, L.-W., Chi, Y.-I., Holbrook, E.L., Carter, R., Holbrook, S.R. | Unique |
| 438D | FR3D | 16 | 8 | 2.5 | 5/12/1999 | | STRUCTURE OF AN RNA DUPLEX R(GGGCGCUCC)2 WITH NON-ADJACENT G.U BASE PAIRS | Shi, K., Wahl, M.C., Sundaralingam, M. | Unique |
| 439D | FR3D | 16 | 8 | 1.6 | 9/14/2001 | | 5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3' | Perbandt, M., Lorenz, S., Vallazza, M., Erdmann, V.A., Betzel, C. | Unique |
| 472D | FR3D | 16 | 8 | 1.9 | 11/27/2000 | | STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS | Deng, J., Sundaralingam, M. | Unique |
| 2E9R | FR3D | 15 | 6 | 2.8 | 6/26/2007 | Foot-and-mouth disease virus C-S8c1 | Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin | Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N. | Unique |
| 2F8K | FR3D | 15 | 6 | 2.0 | 1/24/2006 | Saccharomyces cerevisiae | Sequence specific recognition of RNA hairpins by the SAM domain of Vts1 | Aviv, T., Lin, Z., Ben-Ari, G., Smibert, C.A., Sicheri, F. | Unique |
| 2G91 | FR3D | 15 | 6 | 1.5 | 4/3/2007 | | Crystal Structure Analysis of the an RNA nonamer r(GGUGCGC)d(BrC)r(C) | Shi, K., Pan, B., Sundaralingam, M. | Unique |
| 3DD2 | FR3D | 15 | 1 | 1.9 | 11/11/2008 | Homo sapiens | Crystal structure of an RNA aptamer bound to human thrombin | Long, S.B., Sullenger, B.A. | Unique |
| 1L3Z | FR3D | 14 | 1 | 2.0 | 2/25/2003 | | Crystal Structure Analysis of an RNA Heptamer | Shi, K., Pan, B., Sundaralingam, M. | Unique |
| 2A0P | FR3D | 14 | 6 | 2.0 | 8/16/2005 | | Crystal structure of RNA oligomer containing 4'-thioribose | Haeberli, P., Berger, I., Pallan, P.S., Egli, M. | Unique |
| 2R93 | FR3D | 14 | 6 | 4.0 | 11/27/2007 | Saccharomyces cerevisiae | Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop | Lehmann, E., Brueckner, F., Cramer, P. | Unique |
| 2V6W | FR3D | 14 | 7 | 1.8 | 11/6/2007 | | TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION | Foerster, C., Brauer, A.B.E., Brode, S., Fuerste, J.P., Betzel, C., Erdmann, V.A. | Unique |
| 2V7R | FR3D | 14 | 7 | 1.2 | 3/18/2008 | | CRYSTAL STRUCTURE OF A HUMAN TRNAGLY MICROHELIX AT 1.2 ANGSTROM RESOLUTION | Foerster, C., Mankowska, M., Fuerste, J.P., Perbandt, M., Betzel, C., Erdmann, V.A. | Unique |
| 2VUQ | FR3D | 14 | 7 | 1.2 | 3/10/2009 | | CRYSTAL STRUCTURE OF A HUMAN TRNAGLY ACCEPTOR STEM MICROHELIX (DERIVED FROM THE GENE SEQUENCE DG9990) AT 1.18 ANGSTROEM RESOLUTION | Eichert, A., Perbandt, M., Schreiber, A., Fuerste, J.P., Betzel, C., Erdmann, V.A., Foerster, C. | Unique |
| 1N35 | FR3D | 13 | 5 | 2.5 | 12/25/2002 | Mammalian orthoreovirus 3 | lambda3 elongation complex with four phosphodiester bond formed | Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C. | Unique |
| 1WNE | FR3D | 13 | 4 | 3.0 | 8/31/2004 | Foot-and-mouth disease virus C-S8c1 | Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with a template-primer RNA | Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N. | Unique |
| 1ZSE | FR3D | 12 | 4 | 3.0 | 5/9/2006 | Enterobacterio phage MS2 | RNA stemloop from bacteriophage Qbeta complexed with an N87S mutant MS2 Capsid | Horn, W.T., Tars, K., Grahn, E., Helgstrand, C., Baron, A.J., Lago, H., Adams, C.J., Peabody, D.S., Phillips, S.E.V., Stonehouse, N.J., Liljas, L., Stockley, P.G. | 2B2D |
| 2GXB | FR3D | 12 | 6 | 2.3 | 5/1/2007 | Homo sapiens | Crystal Structure of The Za Domain bound to Z-RNA | Athanasiadis, A., Placido, D., Rich, A. | Unique |
| 1N38 | FR3D | 7 | 2 | 2.8 | 12/25/2002 | Mammalian orthoreovirus 3 | reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed | Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C. | Unique |
| 3G9Y | FR3D | 6 | 1 | 1.4 | 3/3/2009 | Homo sapiens | Crystal structure of the second zinc finger from ZRANB2/ZNF265 bound to 6 nt ssRNA sequence AGGUAA | Loughlin, F.E., McGrath, A.P., Lee, M., Guss, J.M., Mackay, J.P. | Unique |