Instances of cWW-tSH-tWH-tHS-cWW Motif

             Filename Discrepancy       1       2       3       4       5       6       7       8       9      10        Chains       1-2   1-3   1-4   1-5   1-6   1-7   1-8   1-9  1-10   2-3   2-4   2-5   2-6   2-7   2-8   2-9  2-10   3-4   3-5   3-6   3-7   3-8   3-9  3-10   4-5   4-6   4-7   4-8   4-9  4-10   5-6   5-7   5-8   5-9  5-10   6-7   6-8   6-9  6-10   7-8   7-9  7-10   8-9  8-10  9-10   2-8   7-3  

LIB00003 1        1J5E      0.0000  U  580  G  581  U  582  A  583  G  584  U  757  G  758  A  759  G  760  G  761       AAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----  ----   cWW   s35  ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   s33   tWH   s55  ----   s35   ntHW  tHS   s55  ----  ----   cWW   ns55 ----  ----  ----   s35  ----  ----  ----   ncSH ----  ----   s35  ----   s35   4BPh   5BPh 
LIB00003 2        2AVY      0.1732  C  580  G  581  C  582  A  583  G  584  U  757  C  758  A  759  G  760  G  761       AAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----   ntHW  cWW   s35  ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   ntHW  tWH   s55  ----   s35   ntHW  tHS   s55  ----  ----   cWW   ncSW ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   4BPh   6BPh 
LIB00003 3        2J01      0.2318  C 1370  G 1371  U 1372  A 1373  G 1374  U 1357  G 1358  A 1359  A 1360  G 1361       AAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----   ntWH  cWW   ncSH ----  ----  ----   s33  ----   tSH   ns55  s35  ----  ----   s33   tWH   s55  ----   s35   ntHW  tHS   s55  ----  ----   cWW   ncWS ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   5BPh   5BPh 
LIB00003 4        2AW4      0.2404  C 1370  G 1371  U 1372  A 1373  G 1374  C 1357  G 1358  A 1359  G 1360  G 1361       BBBBBBBBBB  s35  ----  ----  ----  ----  ----  ----  ----   cWW   s35  ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   s33   tWH   s55  ----   s35   nbif  tHS   s55  ----  ----   cWW   s55  ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   4BPh   5BPh 
LIB00003 5        1S72      0.2535  C  705  G  706  C  707  A  708  G  709  C  719  G  720  A  721  G  722  G  723       0000000000  s35  ----  ----  ----  ----  ----  ----   ntHW  cWW  ----  ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   s33   tWH   s55  ----   s35   nbif  tHS   s55  ----  ----   cWW   ns55 ----  ----  ----   s35  ----  ----  ----   ncSH ----  ----   s35  ----   s35   5BPh   5BPh 
LIB00003 6        1Y69      0.2606  C 1383  G 1384  C 1385  A 1386  G 1387  U 1370  G 1371  A 1372  G 1373  G 1374       0000000000  ns53 ----  ----  ----  ----  ----  ----  ----   cWW  ----  ----  ----  ----   s33   ntSH  ntSH  s55   s35  ----  ----  ----   tWH   s55  ----   s35   ntHW  tHS   s55  ----  ----   cWW   ntHS ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   ns35  4BPh   5BPh
LIB00003 7        1J5E      0.2644  G  799  G  800  U  801  A  802  G  803  C  779  A  780  A  781  A  782  C  783       AAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----   ncWW  cWW   ncSH ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   ns33  tWH   s55  ----   s35   nbif  tHS   s55  ----  ----   cWW   ns55 ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   4BPh   6BPh 
LIB00003 8        1HQ1      0.2989  A  161  G  162  C  163  A  164  G  165  U  146  C  147  A  148  G  149  G  150       BBBBBBBBBB  s35  ----  ----  ----  ----  ----  ----   ntWH  cWW   s35  ----  ----  ----   s33  ----   tSH   ns55  s35  ----  ----   tHW   tWH   ncWW ----   s35   ntHW  tHS   s55  ----  ----   cWW   ncSW ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   5BPh   6BPh 
LIB00003 9        2V3C      0.3013  A  216  G  217  C  218  A  219  A  220  C  201  C  202  A  203  G  204  G  205       NNNNNNNNNN  s35  ----  ----  ----  ----  ----  ----   ntWH  cWW   s35  ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   tHW   tWH   s55  ----   s35   nbif  tHS   s55  ----  ----   ncWW  ncWS ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   4BPh   6BPh 
LIB00003 10       2AVY      0.3023  G  799  G  800  U  801  A  802  G  803  C  779  A  780  A  781  A  782  C  783       AAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----   ncWW  cWW   ncSH ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   s33   tWH   s55  ----   s35   nbif  tHS   s55  ----  ----   cWW   s55  ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   4BPh   6BPh 
LIB00003 11       1S72      0.3116  G 1542  G 1543  U 1544  C 1545  G 1546  U 1639  C 1640  A 1641  A 1642  C 1643       0000000000  s35  ----  ----  ----  ----  ----  ----  ----   cWW   ncSH ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   ns33  tWH   s55  ----   s35  ----   tHS   s55  ----  ----   cWW   ncSW ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   5BPh   6BPh 
LIB00003 12       1MFQ      0.3176  A  205  G  206  C  207  A  208  G  209  C  190  C  191  A  192  G  193  G  194       AAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----   ntWH  cWW   s35  ----  ----  ----   s33  ----   tSH   s55   s35  ----  ----   tHW   tWH   s55  ----   s35   nbif  tHS   s55  ----  ----   cWW   ncSW ----  ----  ----   s35  ----  ----  ----  ----  ----  ----   s35  ----   s35   5BPh   6BPh 

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tSH-tWH-tHS


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