Instances of tSH-tHS Motif |
Filename Discrepancy 1 2 3 4 5 6 7 8 Chains 1-2 1-3 1-4 1-5 1-6 1-7 1-8 2-3 2-4 2-5 2-6 2-7 2-8 3-4 3-5 3-6 3-7 3-8 4-5 4-6 4-7 4-8 5-6 5-7 5-8 6-7 6-8 7-8
LIB00004 1 2AW4 0.0000 U 554 G 555 A 556 C 557 G 536 G 537 A 538 G 539 BBBBBBBB s35 ---- ---- ---- ---- ntWH cWW ncSH ---- ---- s33 tSH ntSH s35 ncWW tHS s55 ---- cWW s55 ---- ---- s35 ---- ---- ncSH ---- s35
LIB00004 2 2J01 0.2345 C 2350 G 2351 A 2352 G 2353 C 2364 G 2365 A 2366 G 2367 AAAAAAAA s35 ---- ---- ---- ---- nbif cWW ncSH ---- ---- s33 tSH ns55 s35 nbif tHS s55 ---- cWW ns55 ---- ---- s35 ---- ---- ns35 ---- s35
LIB00004 3 2AW4 0.2510 C 2350 G 2351 A 2352 G 2353 C 2364 G 2365 A 2366 G 2367 BBBBBBBB s35 ---- ---- ---- ---- nbif cWW ncSH ---- ---- s33 tSH ns55 s35 nbif tHS s55 ---- cWW s55 ---- ---- s35 ---- ---- ncSH ---- s35
LIB00004 4 1J5E 0.2841 U 1481 G 1482 A 1483 C 1484 G 1416 G 1417 A 1418 G 1419 AAAAAAAA s35 ---- ---- ---- ---- ntWH cWW ncSH ---- ---- s33 tSH ns55 s35 ---- tHS s55 ---- cWW ns55 ---- ---- s35 ---- ---- ncSH ---- s35
LIB00004 5 2AW4 0.3281 U 1883 G 1884 A 1885 U 1886 U 1856 G 1857 A 1858 U 1859 BBBBBBBB s35 ---- ---- ---- ---- ntWH cwW ncSH ---- ---- s33 tSH ncSW s35 ntHW tHS s55 ---- cwW ncWS ---- ---- s35 ---- ---- ncSH ---- s35
LIB00004 6 1Y69 0.3959 C 2343 G 2344 A 2345 G 2346 C 2329 G 2330 A 2331 G 2332 00000000 s35 ---- ---- ---- ---- ---- cWW ns35 ---- ---- s33 ntSH s55 s35 nbif tHS s55 ---- cWW ns55 ---- ---- s35 ---- ---- ncSH ---- ns35
LIB00004 7 1S72 0.5033 C 2873 G 2874 A 2875 G 2876 C 2881 G 2882 A 2883 G 2884 00000000 s35 ---- ---- ---- ---- nbif cWW ---- ---- ---- s33 tSH s55 ns35 nbif tHS s55 ---- cWW s55 ---- ---- s35 ---- ---- ---- ---- s35
LIB00004 8 2QBZ 0.5876 U 153 A 154 A 156 G 157 U 28 G 29 A 30 G 31 XXXXXXXX s35 ---- ---- ---- ---- ntWH cWW ---- ---- ---- s33 tSH s55 s35 ntHW tHS s55 ---- cWW ns55 ---- ---- s35 ---- ---- ncSH ---- s35
LIB00004 9 2AVY 0.5919 U 1481 G 1482 A 1483 C 1484 G 1416 G 1417 A 1418 G 1419 AAAAAAAA s35 ---- ---- ---- ---- ---- cWW ncSH ---- ---- s33 tSH s55 s35 ---- tHS s55 ---- cWW s55 ---- ---- s35 ---- ---- ---- ---- ns35
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Created on 9/14/2008 | Questions or comments? Send us an email! |