Instances of tSH-tHS Motif

             Filename Discrepancy       1       2       3       4       5       6       7       8        Chains     1-2   1-3   1-4   1-5   1-6   1-7   1-8   2-3   2-4   2-5   2-6   2-7   2-8   3-4   3-5   3-6   3-7   3-8   4-5   4-6   4-7   4-8   5-6   5-7   5-8   6-7   6-8   7-8

LIB00004 1        2AW4      0.0000  U  554  G  555  A  556  C  557  G  536  G  537  A  538  G  539       BBBBBBBB  s35  ----  ----  ----  ----   ntWH  cWW   ncSH ----  ----   s33   tSH   ntSH  s35   ncWW  tHS   s55  ----   cWW   s55  ----  ----   s35  ----  ----   ncSH ----   s35 
LIB00004 2        2J01      0.2345  C 2350  G 2351  A 2352  G 2353  C 2364  G 2365  A 2366  G 2367       AAAAAAAA  s35  ----  ----  ----  ----   nbif  cWW   ncSH ----  ----   s33   tSH   ns55  s35   nbif  tHS   s55  ----   cWW   ns55 ----  ----   s35  ----  ----   ns35 ----   s35 
LIB00004 3        2AW4      0.2510  C 2350  G 2351  A 2352  G 2353  C 2364  G 2365  A 2366  G 2367       BBBBBBBB  s35  ----  ----  ----  ----   nbif  cWW   ncSH ----  ----   s33   tSH   ns55  s35   nbif  tHS   s55  ----   cWW   s55  ----  ----   s35  ----  ----   ncSH ----   s35 
LIB00004 4        1J5E      0.2841  U 1481  G 1482  A 1483  C 1484  G 1416  G 1417  A 1418  G 1419       AAAAAAAA  s35  ----  ----  ----  ----   ntWH  cWW   ncSH ----  ----   s33   tSH   ns55  s35  ----   tHS   s55  ----   cWW   ns55 ----  ----   s35  ----  ----   ncSH ----   s35 
LIB00004 5        2AW4      0.3281  U 1883  G 1884  A 1885  U 1886  U 1856  G 1857  A 1858  U 1859       BBBBBBBB  s35  ----  ----  ----  ----   ntWH  cwW   ncSH ----  ----   s33   tSH   ncSW  s35   ntHW  tHS   s55  ----   cwW   ncWS ----  ----   s35  ----  ----   ncSH ----   s35 
LIB00004 6        1Y69      0.3959  C 2343  G 2344  A 2345  G 2346  C 2329  G 2330  A 2331  G 2332       00000000  s35  ----  ----  ----  ----  ----   cWW   ns35 ----  ----   s33   ntSH  s55   s35   nbif  tHS   s55  ----   cWW   ns55 ----  ----   s35  ----  ----   ncSH ----   ns35
LIB00004 7        1S72      0.5033  C 2873  G 2874  A 2875  G 2876  C 2881  G 2882  A 2883  G 2884       00000000  s35  ----  ----  ----  ----   nbif  cWW  ----  ----  ----   s33   tSH   s55   ns35  nbif  tHS   s55  ----   cWW   s55  ----  ----   s35  ----  ----  ----  ----   s35 
LIB00004 8        2QBZ      0.5876  U  153  A  154  A  156  G  157  U   28  G   29  A   30  G   31       XXXXXXXX  s35  ----  ----  ----  ----   ntWH  cWW  ----  ----  ----   s33   tSH   s55   s35   ntHW  tHS   s55  ----   cWW   ns55 ----  ----   s35  ----  ----   ncSH ----   s35 
LIB00004 9        2AVY      0.5919  U 1481  G 1482  A 1483  C 1484  G 1416  G 1417  A 1418  G 1419       AAAAAAAA  s35  ----  ----  ----  ----  ----   cWW   ncSH ----  ----   s33   tSH   s55   s35  ----   tHS   s55  ----   cWW   s55  ----  ----   s35  ----  ----  ----  ----   ns35

View Mutual Discrepancy Graph     View Centroid 2D diagram2D
tSH-tHS


Return to the Motif Library index
Learn more about basepairs at the Online Basepair Catalog


Download candidates in PDB format
Download FR3D SaveSearch File




Valid HTML 4.01 Transitional Created on 9/14/2008 Questions or comments? Send us an email!