Instances of tSH-tSH-tHS Motif |
Filename Discrepancy 1 2 3 4 5 6 7 8 9 10 Chains 1-2 1-3 1-4 1-5 1-6 1-7 1-8 1-9 1-10 2-3 2-4 2-5 2-6 2-7 2-8 2-9 2-10 3-4 3-5 3-6 3-7 3-8 3-9 3-10 4-5 4-6 4-7 4-8 4-9 4-10 5-6 5-7 5-8 5-9 5-10 6-7 6-8 6-9 6-10 7-8 7-9 7-10 8-9 8-10 9-10
LIB00006 1 2J01 0.0000 G 1856 G 1857 G 1858 A 1859 G 1860 C 1882 G 1883 A 1884 A 1885 C 1886 AAAAAAAAAA s35 ---- ---- ---- ---- ---- ---- ---- cWW s35 ---- ---- ---- ---- ntSH tSH s55 ncSH ---- ---- s33 tSH ntSH ---- s35 nbif tHS s55 ---- ---- cWW s55 ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 2 2A64 0.2037 C 347 G 348 G 349 A 350 G 351 C 378 G 379 A 380 A 381 G 382 AAAAAAAAAA s35 ---- ---- ---- ---- ---- ---- nbif cWW s35 ---- ---- ---- ---- ntSH ntSH s55 ncSH ---- ---- s33 tSH ntSH ---- s35 ---- ntHS s55 ---- ---- cWW ns55 ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 3 2A64 0.2689 C 297 G 298 G 299 A 300 G 301 C 284 G 285 A 286 A 287 G 288 AAAAAAAAAA s35 ---- ---- ---- ---- ---- ---- nbif cWW s35 ---- ---- ---- ---- ntSH tSH s55 ---- ---- ---- s33 tSH ntSH ---- s35 nbif tHS s55 ---- ---- cWW s55 ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 4 1J5E 0.3092 C 1303 G 1304 G 1305 A 1306 U 1307 U 1330 G 1331 A 1332 A 1333 G 1334 AAAAAAAAAA s35 ---- ---- ---- ---- ---- ---- nbif cWW s35 ---- ---- ---- ---- ntSH tSH s55 ncSH ---- ---- s33 tSH ntSH ---- s35 ntHW tHS s55 ---- ---- cWw ncWS ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 5 2AVY 0.3274 C 1303 G 1304 G 1305 A 1306 U 1307 U 1330 G 1331 A 1332 A 1333 G 1334 AAAAAAAAAA s35 ---- ---- ---- ---- ---- ---- nbif cWW s35 ---- ---- ---- ---- ntSH tSH s55 ns35 ---- ---- s33 tSH ntSH ---- s35 ntHW tHS s55 ---- ---- cWw ncWS ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 6 2AW4 0.3708 U 724 G 725 G 726 A 727 G 728 U 703 G 704 A 705 A 706 G 707 BBBBBBBBBB s35 ---- ---- ---- ---- ---- ---- ntWH cWW s35 ---- ---- ---- ---- s33 tSH ntSH ncSH ---- ---- s33 tSH ncSW ---- s35 ntHW tHS s55 ---- ---- cWW ---- ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 7 1S72 0.3800 U 815 G 816 G 817 A 818 A 819 U 794 G 795 A 796 A 797 G 798 0000000000 s35 ---- ---- ---- ---- ---- ---- ntWH cWW s35 ---- ---- ---- ---- s33 tSH ns55 s35 ---- ---- s33 tSH ntSH ---- s35 ntHW tHS s55 ---- ---- cWW ncWS ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 8 2AW4 0.3840 U 1736 G 1737 G 1738 A 1739 G 1740 U 1720 G 1721 A 1722 G 1723 G 1724 BBBBBBBBBB s35 ---- ---- ---- ---- ---- ---- ---- cWW s35 ---- ---- ---- ---- s33 tSH ns55 ncSH ---- ---- s33 tSH ntSH ---- s35 ntHW tHS s55 ---- ---- cWW ---- ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
LIB00006 9 2J01 0.3846 U 724 G 725 G 726 A 727 G 728 U 703 G 704 A 705 A 706 G 707 AAAAAAAAAA s35 ---- ---- ---- ---- ---- ---- ntWH cWW s35 ---- ---- ---- ---- ntSH tSH ns55 s35 ---- ---- s33 tSH ntSH ---- s35 ntHW tHS s55 ---- ---- cWW ---- ---- ---- ---- s35 ---- ---- ---- ncSH ---- ---- s35 ---- s35
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Created on 9/14/2008 | Questions or comments? Send us an email! |