Instances of cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW Motif

             Filename Discrepancy       1       2       3       4       5       6       7       8       9      10      11      12      13        Chains          1-2   1-3   1-4   1-5   1-6   1-7   1-8   1-9  1-10  1-11  1-12  1-13   2-3   2-4   2-5   2-6   2-7   2-8   2-9  2-10  2-11  2-12  2-13   3-4   3-5   3-6   3-7   3-8   3-9  3-10  3-11  3-12  3-13   4-5   4-6   4-7   4-8   4-9  4-10  4-11  4-12  4-13   5-6   5-7   5-8   5-9  5-10  5-11  5-12  5-13   6-7   6-8   6-9  6-10  6-11  6-12  6-13   7-8   7-9  7-10  7-11  7-12  7-13   8-9  8-10  8-11  8-12  8-13  9-10  9-11  9-12  9-13 10-11 10-12 10-13 11-12 11-13 12-13

LIB00009 1        1j5e      0.0000  C  370  G  371  C  372  A  373  A  374  U  375  G  376  G  377  C  386  U  387  A  389  C  390  G  391       AAAAAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----  ----   cWW   s35   ncSH  ntSW ----  ----  ----  ----  ----  ----   cWW   s55  ----   ncSH ----   ntWW ----  ----   s33   tWH   ncWS ----   s35  ----  ----  ----  ----  ----  ----  ----   ncWS  s35  ----  ----  ----  ----   ncWW  cWS  ----   s35  ----  ----   ncWW  cWW  ----  ----   s35  ----   cWW   s55  ----  ----   cWW   s55  ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 2        2AVY      0.1373  C  370  A  371  C  372  A  373  A  374  U  375  G  376  G  377  C  386  U  387  A  389  U  390  G  391       AAAAAAAAAAAAA  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35  ----  ----  ----  ----  ----  ----  ----  ----   cWW   s55   ns53  ncSH  ncWH ----  ----  ----   s33   ntWH ----  ----   s35  ----  ----  ----  ----  ----  ----   ncWS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----   ncWW  cWW  ----  ----   s35   ntWH  cWW   s55  ----  ----   cWW   s55  ----  ----  ----   s35  ----  ----  ----   ncWH ----  ----   s35  ----   s35 
LIB00009 3        2AW4      0.2909  A 2679  U 2680  C 2681  A 2682  C 2683  U 2684  G 2685  G 2686  C 2723  U 2724  A 2725  A 2727  U 2728       BBBBBBBBBBBBB  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH  ncSH ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH ----  ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ncWS  cWS   s35   ns53 ----  ----  ----  ----   cWS  ----   s35  ----  ----   ncWW  cWW   ncWS ----   s35   ncWW  cWW   s55  ----  ----   cWW   s55  ----  ----  ----   s35  ----  ----  ----   ncWH ----  ----   s35  ----   s35 
LIB00009 4        1KOG      0.3346  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       PPPPPPPPPPPPP  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 5        1KOG      0.3365  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       NNNNNNNNNNNNN  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncSW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 6        1KOG      0.3378  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       JJJJJJJJJJJJJ  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ntSW ----  ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 7        1KOG      0.3380  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       MMMMMMMMMMMMM  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncSW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 8        1KOG      0.3382  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       LLLLLLLLLLLLL  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 9        1KOG      0.3387  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       IIIIIIIIIIIII  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS  ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 10       1Y69      0.3405  A 2658  C 2659  C 2660  G 2661  C 2662  U 2663  G 2664  G 2665  C 2703  U 2704  A 2705  G 2707  U 2708       0000000000000  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35  ----  ----  ----  ----  ----  ----  ----  ----   cWW   ncWW ----   ncWH ----  ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS ----   s35   ns53 ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   ncWW  cWW   s55  ----  ----   cWW   ns55 ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 11       1KOG      0.3417  A   95  C   96  C   97  A   98  C   99  U  100  G  101  C  102  G   72  U   73  A   74  G   76  U   77       OOOOOOOOOOOOO  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----   ncWW  cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH  ntSW ----  ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----  ----   ncWS  s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----  ----   cWW   ncWS ----   s35   nbif  cWW   s55  ----  ----   cWW   ncWW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 
LIB00009 12       1S72      0.3420  G 2716  C 2717  C 2718  A 2719  C 2720  U 2721  G 2722  G 2723  C 2759  C 2760  A 2761  G 2763  C 2764       0000000000000  s35  ----  ----  ----  ----  ----  ----  ----  ----  ----  ----   cWW   s35   ncSH ----  ----  ----  ----  ----  ----   ntWH  cWW   ncWW  ncSH  ncWH  ntSW  ntWW ----  ----   s33   tWH   s55  ----   s35  ----  ----  ----  ----  ----  ----   ntHS ----   s35  ----  ----  ----  ----   nbif  cWS  ----   s35  ----  ----   ncWW  cWW   ncWS ----   s35   ncWW  cWW   s55  ----  ----   cWW   ncSW ----  ----  ----   s35  ----  ----  ----   s35  ----  ----   s35  ----   s35 

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cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW


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