FR3D RNA Motif Library

Learn more about Interacting Edges

The new version of the Motif Atlas is now available

This list was compiled manually and has not been updated since 2008. Please refer to the new version of the Motif Atlas available at RNA 3D Hub.

Internal Loops


cWW-tHW-cSW-cWW_C-loop19
cWW-tSH-tHW-cSH-tHH-tHS-cWW_sarcin/ricin2D
cWW-tSH-tHW-cSH-tHH-tHS-cWW_sarcin/ricin

17
cWW-tWH-insertion-tHS-cWW2D
tWH-insertion-tHS

14
cWW-tWH-cWW_GAAA-receptor2D
cWW-tWH-cWW_GAAA-receptor

14
cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW2D
cWW-(cWW-cSW)-(tWH-cWW)-cWW-cWW

12
cWW-tSH-tWH-tHS-cWW2D
tSH-tWH-tHS

12
cWW-tHS-cWW2D
tHS_C-loop

11
cWW-tSH-tHS-cWW2D
tSH-tHS

9
cWW-tSH-tSH-tHS-cWW2D
tSH-tSH-tHS

9
cWW-tSH-tSH-tHS-cWW_kink-turn2D
tSH-tSH-tHS_kink-turn

7
cWW-tSH-tSH-tHS-tHS-cWW2D
tSH-tSH-tHS-tHS

4
cWW-tWH-tSH-tHS-cWW2D
tWH-tSH-tHS

4
cWW-cWS-cWW2D
cWW-cWS-cWW

4
cWW-(cWH-cWW)-(tHW-cWW)-cWW2D
cWW-(cWH-cWW)-(tHW-cWW)-cWW

3
cWW-tSH-tHW-tHH-cWW_sarcin-like2D
tSH-tHW-tHH_sarcin-like

3
cWW-cSH-cWW-tHS-cWW2D
cWW-cWW-cWW NB!

2
cWW-tSH-tHH-cSH-tWH-tHS-insertion-cWW2D
cWW-tSH-tHH-cSH-tWH-tHS-insertion-cWW

2
cWW-tSH-tWH-tHS-cWW_kink-turn2D
tSH-tWH-tHS_kink-turn

2

Hairpin Loops


GNRA167
T-loop111
UNCG29
cWW-tSH_U-turn16
cWW-tSH-tSH_U-turn4
cWW-tWH4
cWW-tWH-tWH_U-turn2
cWW-tWW2
cWW_Type12