Home > FR3DSource > xDescribeMask.m

xDescribeMask

PURPOSE ^

SYNOPSIS ^

This is a script file.

DESCRIPTION ^

CROSS-REFERENCE INFORMATION ^

This function calls: This function is called by:

SOURCE CODE ^

0001 
0002 clear Message
0003 
0004 Message{1} = 'Nucleotide mask, location weight, and angle weight are specified  in the boxes on the diagonal.';
0005 
0006 Message{2} = 'For the mask, type A to allow only A''s, similarly with C, G, U. Type AC to allow only A or C, or AGU to allow only A, G, or U. Type ~G to exclude G (or type ACU). You may use one of these standard abbreviations:   M = AC;  R = AG;  W = AU;  S = CG;  Y = CU;  K = GU   V = ACG; H = ACU; D = AGU; B = CGU; N = ACGU Using no mask is the same as specifying ACGU or N. Self-contradictory specifications (such as A ~A) may give unpredictable results or empty searches.';
0007 
0008 Message{3} = 'Specify the location weight for the given nucleotide by typing something of the form LW2.5 in the box. Location weights are normalized automatically, so making them all equal to 5.0 has no effect on the search. The default value, if nothing is specified, is 1.0.';
0009 
0010 Message{4} = 'Specify the angle weight for the given nucleotide by typing something of the form AW2.0 in the box. Angle weights are not automatically normalized; the default is 1.0. Making angle weights larger than 1.0 increases the orientation error. Thus, candidates with low discrepancy will have bases more closely aligned than when using the default value of 1.0 for angle weight.';
0011 
0012 Message{5} = 'Separate the mask, location weight, and angle weight by spaces. ';
0013 
0014 mEditBoxWrap(Message,'Mask help');
0015

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