Individual-group diagnostic, all groups
Listing groups by interaction signature
Group 249 is from HL_99040.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_99040.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               UUGCGG (   1) MLPS  -3.22 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_99040.1  8S95 U   92 G   97'

 matches the original group, F-F-F-F-F-F
Group   3 is from HL_01255.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_01255.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         CAUCCAGUAAAG (   1) MLPS  -8.33 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_01255.1  8Y03 C   25 G   36'

 matches the original group, F-F-F-F-F-F-F-F
Group  62 is from HL_23509.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_23509.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cSH-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         GAAUUCAUUUUC (   1) MLPS  -5.46 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_23509.1  8P9A G 2534 C 2545'

 matches the original group, cSH-F-F-F-F-F-F-F-F-F
Group 199 is from HL_81100.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_81100.2
This group is considered to be unstructured ---------------------------
Number of NTs:  2  Signature: cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00               CGCGUG (   1) MLPS  -5.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81100.2  2Y8Y C   11 G   16'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.79, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGCGUG (   1) MLPS  -5.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81100.2  2Y8W C   11 G   16'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.79, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GCUUGC (   1) MLPS  -6.17 deficit   0.25 prct   0.00 CutScore  97.33;  Ed  0, 0
ans =

    ' HL_81100.2  4WF9 G  283 C  288'

 scores better against   1 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.56, deficit  1.17, prct   0.00; 
Group  69 is from HL_27483.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_27483.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00                 CGUG (   1) MLPS  -4.19 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_27483.1  1KH6 C   42 G   45'

 scores better against   2 groups: HL_32346.4,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.01, deficit  0.00, prct   0.00; HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -4.02, deficit  1.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GCUUCUGC (   1) MLPS  -8.11 deficit   3.91 prct   0.00 CutScore  58.81;  Ed  0, 0
ans =

    ' HL_27483.1  8CRE G  539 C  546'

 scores better against   1 groups: HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  4, 2, MLPS -5.19, deficit  0.55, prct   0.00; 
Group  82 is from HL_32346.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_32346.4
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                 CGUG (   1) MLPS  -4.01 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_32346.4  6U8D C  232 G  235'

 matches the original group, cWW-F
Better:   2 Equal:   0 Score 0.00                 GGUC (   1) MLPS  -4.23 deficit   0.22 prct   0.00 CutScore  97.65;  Ed  0, 0
ans =

    ' HL_32346.4  2UWM G   22 C   25'

 scores better against   2 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.09, deficit  1.17, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  2, 0, MLPS -4.19, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00                UUUUA (   1) MLPS  -4.41 deficit   0.40 prct   0.00 CutScore  95.80;  Ed  0, 0
ans =

    ' HL_32346.4  5CCB U   33 A   37'

 matches the original group, cWW-F
Better:   3 Equal:   0 Score 0.00                 CUCG (   1) MLPS  -4.80 deficit   0.79 prct   0.00 CutScore  91.70;  Ed  0, 0
ans =

    ' HL_32346.4  5J7L C 1728 G 1731'

 scores better against   3 groups: HL_48778.2,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -3.34, deficit  0.14, prct   0.00; HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -4.02, deficit  1.10, prct   0.00; HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -4.31, deficit  0.42, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                CAUUG (   1) MLPS  -4.82 deficit   0.81 prct   0.00 CutScore  91.48;  Ed  0, 0
ans =

    ' HL_32346.4  8VM9 C   34 G   38'

 scores better against   2 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -3.96, deficit  1.10, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; 
Better:   3 Equal:   0 Score 0.00                 UUCA (   1) MLPS  -4.98 deficit   0.97 prct   0.00 CutScore  89.83;  Ed  0, 0
ans =

    ' HL_32346.4  6M0X U   56 A   59'

 scores better against   3 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.10, deficit  1.18, prct   0.00; HL_48778.2,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -4.14, deficit  0.94, prct   0.00; HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -4.16, deficit  0.27, prct   0.00; 
Better:   4 Equal:   0 Score 0.00                CUUCG (   1) MLPS  -5.33 deficit   1.32 prct   0.00 CutScore  86.11;  Ed  0, 0
ans =

    ' HL_32346.4  8P9A C  132 G  136'

 scores better against   4 groups: HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.65, deficit  0.00, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  1, 1, MLPS -4.84, deficit  0.52, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.11, deficit -0.01, prct   0.00; HL_48778.2,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -5.15, deficit  1.95, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CAAUG (   1) MLPS  -5.61 deficit   1.60 prct   0.00 CutScore  83.19;  Ed  0, 0
ans =

    ' HL_32346.4  9C2K C   20 G   24'

 scores better against   5 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -2.86, deficit  0.00, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -4.82, deficit  0.28, prct   0.00; HL_38168.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.99, deficit  0.00, prct   0.00; HL_48778.2,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.36, deficit  2.16, prct   0.00; 
Better:  16 Equal:   0 Score 0.00               CGGAUG (   1) MLPS  -8.04 deficit   4.03 prct   0.00 CutScore  57.61;  Ed  0, 0
ans =

    ' HL_32346.4  9DFE C 2205 G 2219'

 scores better against  16 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.74, deficit  2.56, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.89, deficit  1.56, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -6.64, deficit  4.88, prct   0.00; 
Group  91 is from HL_35941.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_35941.1
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CUCGG (   1) MLPS  -3.78 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_35941.1  4O26 C  186 G  190'

 matches the original group, cWW-F
Group  98 is from HL_38168.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_38168.1
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00                CAAAG (   1) MLPS  -4.99 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38168.1  8J72 C    4 G    8'

 scores better against   1 groups: HL_75660.5,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.54, deficit  0.00, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CUGUUCG (   1) MLPS  -7.97 deficit   2.98 prct   0.00 CutScore  68.61;  Ed  0, 0
ans =

    ' HL_38168.1  9H1K C 2551 G 2557'

 scores better against   3 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.39, deficit  0.00, prct   0.00; HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -6.26, deficit  0.21, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  3, 3, MLPS -7.59, deficit -0.64, prct   0.00; 
Group 117 is from HL_48778.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_48778.2
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  7QR8 C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  7QQP C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  5B2T C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  7QQX C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  7QR0 C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  5FQ5 C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  5VW1 C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  7ZO1 C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  8KAJ C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  8KAL C   55 G   58'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CUAG (   1) MLPS  -3.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48778.2  5F9R C   73 G   76'

 matches the original group, cWW-F
Better:   1 Equal:   0 Score 0.00                 CUUG (   1) MLPS  -3.27 deficit   0.07 prct   0.00 CutScore  99.30;  Ed  0, 0
ans =

    ' HL_48778.2  8P9A C 3350 G 3353'

 scores better against   1 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -2.92, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00                 CUUG (   1) MLPS  -3.27 deficit   0.07 prct   0.00 CutScore  99.30;  Ed  0, 0
ans =

    ' HL_48778.2  8P9A C  276 G  279'

 scores better against   1 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -2.92, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00                 CUUG (   1) MLPS  -3.27 deficit   0.07 prct   0.00 CutScore  99.30;  Ed  0, 0
ans =

    ' HL_48778.2  8CRE C 3315 G 3318'

 scores better against   1 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -2.92, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00                 CUCG (   1) MLPS  -3.34 deficit   0.14 prct   0.00 CutScore  98.55;  Ed  0, 0
ans =

    ' HL_48778.2  6JOO C   58 G   61'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CAAG (   1) MLPS  -4.25 deficit   1.05 prct   0.00 CutScore  88.97;  Ed  0, 0
ans =

    ' HL_48778.2  9DFE C 1565 G 1568'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                 CAAG (   1) MLPS  -4.25 deficit   1.05 prct   0.00 CutScore  88.97;  Ed  0, 0
ans =

    ' HL_48778.2  7A0S C 1581 G 1584'

 matches the original group, cWW-F
Better:   2 Equal:   0 Score 0.00                CUUUG (   1) MLPS  -4.38 deficit   1.18 prct   0.00 CutScore  87.56;  Ed  0, 0
ans =

    ' HL_48778.2  4V9F C  712 G  716'

 scores better against   2 groups: HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -4.23, deficit  0.22, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.38, deficit -0.93, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                CUUUG (   1) MLPS  -4.38 deficit   1.18 prct   0.00 CutScore  87.56;  Ed  0, 0
ans =

    ' HL_48778.2  8CRE C  131 G  135'

 scores better against   2 groups: HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -4.23, deficit  0.22, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.38, deficit -0.93, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                CUUUG (   1) MLPS  -4.38 deficit   1.18 prct   0.00 CutScore  87.56;  Ed  0, 0
ans =

    ' HL_48778.2  4LFB C  201 G  216'

 scores better against   2 groups: HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -4.23, deficit  0.22, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.38, deficit -0.93, prct   0.00; 
Better:   1 Equal:   0 Score 0.00                 CACG (   1) MLPS  -4.39 deficit   1.19 prct   0.00 CutScore  87.51;  Ed  0, 0
ans =

    ' HL_48778.2  8VMA C   37 G   40'

 scores better against   1 groups: HL_27483.1,  4 NTs, cWW-F                                   , Ed  2, 2, MLPS -4.31, deficit  0.12, prct   0.00; 
Better:   1 Equal:   0 Score 0.00                 CACG (   1) MLPS  -4.39 deficit   1.19 prct   0.00 CutScore  87.51;  Ed  0, 0
ans =

    ' HL_48778.2  8VMB C   37 G   40'

 scores better against   1 groups: HL_27483.1,  4 NTs, cWW-F                                   , Ed  2, 2, MLPS -4.31, deficit  0.12, prct   0.00; 
Better:   0 Equal:   0 Score 1.00                CUCUG (   1) MLPS  -4.45 deficit   1.25 prct   0.00 CutScore  86.81;  Ed  0, 0
ans =

    ' HL_48778.2  5AH5 C  46A G  46E'

 matches the original group, cWW-F
Better:   1 Equal:   0 Score 0.00                 UUGA (   1) MLPS  -5.24 deficit   2.04 prct   0.00 CutScore  78.51;  Ed  0, 0
ans =

    ' HL_48778.2  2F8K U    6 A    9'

 scores better against   1 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -4.10, deficit  1.18, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                GUCUC (   1) MLPS  -5.25 deficit   2.05 prct   0.00 CutScore  78.39;  Ed  0, 0
ans =

    ' HL_48778.2  5J7L G   86 C   90'

 scores better against   2 groups: HL_35941.1,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -4.96, deficit  1.17, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.24, deficit  1.23, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                GUCUC (   1) MLPS  -5.25 deficit   2.05 prct   0.00 CutScore  78.39;  Ed  0, 0
ans =

    ' HL_48778.2  4LFB G  838 C  848'

 scores better against   2 groups: HL_35941.1,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -4.96, deficit  1.17, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.24, deficit  1.23, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CAUUG (   1) MLPS  -5.43 deficit   2.23 prct   0.00 CutScore  76.53;  Ed  0, 0
ans =

    ' HL_48778.2  8DP3 C   39 G   43'

 scores better against   5 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -3.96, deficit  1.10, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.82, deficit  0.81, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.10, deficit  0.56, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.28, deficit -0.66, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CAUUG (   1) MLPS  -5.43 deficit   2.23 prct   0.00 CutScore  76.53;  Ed  0, 0
ans =

    ' HL_48778.2  8VM8 C   39 G   43'

 scores better against   5 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -3.96, deficit  1.10, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.82, deficit  0.81, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.10, deficit  0.56, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.28, deficit -0.66, prct   0.00; 
Better:   1 Equal:   0 Score 0.00                 CAGG (   1) MLPS  -5.48 deficit   2.28 prct   0.00 CutScore  75.95;  Ed  0, 0
ans =

    ' HL_48778.2  5J7L C 1565 G 1568'

 scores better against   1 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.11, deficit  2.20, prct   0.00; 
Better:   6 Equal:   0 Score 0.00                CUAAG (   1) MLPS  -5.50 deficit   2.30 prct   0.00 CutScore  75.74;  Ed  0, 0
ans =

    ' HL_48778.2  4L8H C    9 G   13'

 scores better against   6 groups: HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.51, deficit  1.33, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.28, deficit  0.75, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  1, 1, MLPS -5.42, deficit  1.10, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.47, deficit  0.00, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -5.49, deficit  2.28, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                 CGAG (   1) MLPS  -5.60 deficit   2.40 prct   0.00 CutScore  74.76;  Ed  0, 0
ans =

    ' HL_48778.2  4WF9 C 1612 G 1615'

 scores better against   2 groups: HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.80, deficit  0.79, prct   0.00; HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.11, deficit  2.20, prct   0.00; 
Better:   6 Equal:   0 Score 0.00                UUUCA (   1) MLPS  -5.96 deficit   2.76 prct   0.00 CutScore  70.98;  Ed  0, 0
ans =

    ' HL_48778.2  6LTU U   12 A   16'

 scores better against   6 groups: HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.73, deficit  0.08, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  3, 1, MLPS -4.97, deficit  0.64, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.03, deficit -0.09, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.28, deficit  1.61, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -5.51, deficit  1.50, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               CUUAUG (   1) MLPS  -6.13 deficit   2.93 prct   0.00 CutScore  69.17;  Ed  0, 0
ans =

    ' HL_48778.2  7A0S C  553 G  558'

 scores better against   6 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -5.35, deficit  0.69, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.37, deficit  0.89, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.43, deficit  0.31, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  1, 1, MLPS -5.45, deficit  1.12, prct   0.00; 
Better:   3 Equal:   0 Score 0.00                CAUCG (   1) MLPS  -6.20 deficit   3.00 prct   0.00 CutScore  68.42;  Ed  0, 0
ans =

    ' HL_48778.2  7D3J C   12 G   16'

 scores better against   3 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -4.83, deficit -0.47, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.92, deficit  1.91, prct   0.00; HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -6.10, deficit  2.21, prct   0.00; 
Better:   3 Equal:   0 Score 0.00                CAUCG (   1) MLPS  -6.20 deficit   3.00 prct   0.00 CutScore  68.42;  Ed  0, 0
ans =

    ' HL_48778.2  7EU9 C   12 G   16'

 scores better against   3 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -4.83, deficit -0.47, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.92, deficit  1.91, prct   0.00; HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -6.10, deficit  2.21, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                CCAUG (   1) MLPS  -6.26 deficit   3.06 prct   0.00 CutScore  67.78;  Ed  0, 0
ans =

    ' HL_48778.2  4V9F C 1651 G 1655'

 scores better against   2 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -3.96, deficit  1.10, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.78, deficit  3.22, prct   0.00; 
Better:   1 Equal:   0 Score 0.00                 UAGA (   1) MLPS  -6.29 deficit   3.09 prct   0.00 CutScore  67.48;  Ed  0, 0
ans =

    ' HL_48778.2  5U30 U    4 A    7'

 scores better against   1 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -5.20, deficit  2.28, prct   0.00; 
Better:   3 Equal:   0 Score 0.00                CCUUG (   1) MLPS  -6.33 deficit   3.13 prct   0.00 CutScore  67.08;  Ed  0, 0
ans =

    ' HL_48778.2  8CRE C 1788 G 1792'

 scores better against   3 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.78, deficit  3.22, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.03, deficit  0.90, prct   0.00; 
Better:   4 Equal:   0 Score 0.00                CCCUG (   1) MLPS  -6.40 deficit   3.20 prct   0.00 CutScore  66.32;  Ed  0, 0
ans =

    ' HL_48778.2  4YAZ C   56 G   60'

 scores better against   4 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.78, deficit  3.22, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -5.98, deficit  2.20, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.00, deficit  2.79, prct   0.00; 
Better:   6 Equal:   0 Score 0.00                GUCAC (   1) MLPS  -6.44 deficit   3.24 prct   0.00 CutScore  65.87;  Ed  0, 0
ans =

    ' HL_48778.2  6MSF G    6 C   10'

 scores better against   6 groups: HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.40, deficit  1.20, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.51, deficit  1.33, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -4.96, deficit  1.17, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  3, 1, MLPS -5.54, deficit  1.22, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -6.16, deficit -0.52, prct   0.00; 
Better:   6 Equal:   0 Score 0.00                GUCAC (   1) MLPS  -6.44 deficit   3.24 prct   0.00 CutScore  65.87;  Ed  0, 0
ans =

    ' HL_48778.2  6MSF G    6 C   10'

 scores better against   6 groups: HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.40, deficit  1.20, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.51, deficit  1.33, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -4.96, deficit  1.17, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  3, 1, MLPS -5.54, deficit  1.22, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -6.16, deficit -0.52, prct   0.00; 
Better:  11 Equal:   0 Score 0.00               UUUUUA (   1) MLPS  -7.00 deficit   3.80 prct   0.00 CutScore  59.99;  Ed  0, 0
ans =

    ' HL_48778.2  8X5V U   91 A   96'

 scores better against  11 groups: HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.04, deficit -0.08, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.57, deficit  1.18, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.10, deficit  3.64, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -6.11, deficit  0.63, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.11, deficit  0.59, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               UUUCUA (   1) MLPS  -7.07 deficit   3.87 prct   0.00 CutScore  59.24;  Ed  0, 0
ans =

    ' HL_48778.2  5SWD U   47 A   52'

 scores better against   7 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -4.89, deficit  2.95, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -5.31, deficit  0.83, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.42, deficit  0.77, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.97, deficit  2.30, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.67, deficit  2.28, prct   0.00; 
Better:   7 Equal:   0 Score 0.00                CCGUG (   1) MLPS  -7.50 deficit   4.30 prct   0.00 CutScore  54.76;  Ed  0, 0
ans =

    ' HL_48778.2  8P9A C 1792 G 1796'

 scores better against   7 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; HL_60914.1,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -5.96, deficit  2.71, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.54, deficit  1.41, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -7.08, deficit  3.30, prct   0.00; 
Better:  16 Equal:   0 Score 0.00               GUGUCC (   1) MLPS -10.31 deficit   7.11 prct   0.00 CutScore  25.13;  Ed  0, 0
ans =

    ' HL_48778.2  4KR9 G   10 C   15'

 scores better against  16 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -5.51, deficit  0.62, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.68, deficit  3.22, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.93, deficit  1.87, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 3, MLPS -6.17, deficit  0.25, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.42, deficit  1.30, prct   0.00; 
Better:  11 Equal:   0 Score 0.00               CUACGG (   1) MLPS -10.45 deficit   7.25 prct   0.00 CutScore  23.68;  Ed  0, 0
ans =

    ' HL_48778.2  2B3J C   32 G   37'

 scores better against  11 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -3.39, deficit  1.44, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -6.09, deficit  1.61, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.10, deficit  2.43, prct   0.00; HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  2, 1, MLPS -6.39, deficit  3.17, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.05, deficit  3.40, prct   0.00; 
Group 133 is from HL_55195.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_55195.3
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               UUUAGG (   1) MLPS  -3.01 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_55195.3  9DFE U  826 G  831'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00               UUUAGG (   1) MLPS  -3.01 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_55195.3  5J7L U  826 G  831'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00               UUUAGG (   1) MLPS  -3.01 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_55195.3  4WF9 U  871 G  876'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00               UUGAGG (   1) MLPS  -3.90 deficit   0.89 prct   0.00 CutScore  90.66;  Ed  0, 0
ans =

    ' HL_55195.3  7A0S U  839 G  844'

 matches the original group, cWW-F
Better:   7 Equal:   0 Score 0.00                GGUAC (   1) MLPS  -6.50 deficit   3.49 prct   0.00 CutScore  63.31;  Ed  0, 0
ans =

    ' HL_55195.3  8P9A G 2110 C 2114'

 scores better against   7 groups: HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.92, deficit  1.03, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.33, deficit  0.80, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -5.50, deficit  2.29, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -5.91, deficit  0.07, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -6.11, deficit  2.93, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               UCGAAG (   1) MLPS  -6.73 deficit   3.72 prct   0.00 CutScore  60.84;  Ed  0, 0
ans =

    ' HL_55195.3  4V9F U  919 G  924'

 matches the original group, cWW-F
Group 137 is from HL_56334.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_56334.1
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00                AUAUU (   1) MLPS  -5.12 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_56334.1  6TQB A   10 U   14'

 scores better against   2 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  3, 1, MLPS -4.27, deficit  1.41, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.89, deficit -0.41, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                AUAUU (   1) MLPS  -5.12 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_56334.1  6TQA A    9 U   13'

 scores better against   2 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  3, 1, MLPS -4.27, deficit  1.41, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.89, deficit -0.41, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CUGUG (   1) MLPS  -5.19 deficit   0.06 prct   0.00 CutScore  99.32;  Ed  0, 0
ans =

    ' HL_56334.1  4ZLD C    7 G   11'

 scores better against   5 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -4.76, deficit  0.43, prct   0.00; HL_60914.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.86, deficit  1.61, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.89, deficit -0.42, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CUGUG (   1) MLPS  -5.19 deficit   0.06 prct   0.00 CutScore  99.32;  Ed  0, 0
ans =

    ' HL_56334.1  4QI2 C   10 G   14'

 scores better against   5 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -4.76, deficit  0.43, prct   0.00; HL_60914.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.86, deficit  1.61, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.89, deficit -0.42, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CUGUG (   1) MLPS  -5.19 deficit   0.06 prct   0.00 CutScore  99.32;  Ed  0, 0
ans =

    ' HL_56334.1  4QIL C    8 G   12'

 scores better against   5 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -4.76, deficit  0.43, prct   0.00; HL_60914.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.86, deficit  1.61, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.89, deficit -0.42, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; 
Better:   5 Equal:   0 Score 0.00                CUGUG (   1) MLPS  -5.19 deficit   0.06 prct   0.00 CutScore  99.32;  Ed  0, 0
ans =

    ' HL_56334.1  4Z31 C    6 G   10'

 scores better against   5 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -4.76, deficit  0.43, prct   0.00; HL_60914.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.86, deficit  1.61, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -4.89, deficit -0.42, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UUUUCA (   1) MLPS  -5.48 deficit   0.35 prct   0.00 CutScore  96.27;  Ed  0, 0
ans =

    ' HL_56334.1  4QOZ U   11 A   16'

 scores better against   1 groups: HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.42, deficit  0.77, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UUUUCA (   1) MLPS  -5.48 deficit   0.35 prct   0.00 CutScore  96.27;  Ed  0, 0
ans =

    ' HL_56334.1  4TUW U   13 A   18'

 scores better against   1 groups: HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.42, deficit  0.77, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UUUUCA (   1) MLPS  -5.48 deficit   0.35 prct   0.00 CutScore  96.27;  Ed  0, 0
ans =

    ' HL_56334.1  1ZBH U   11 A   16'

 scores better against   1 groups: HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.42, deficit  0.77, prct   0.00; 
Better:   7 Equal:   0 Score 0.00                CAUUG (   1) MLPS  -6.03 deficit   0.90 prct   0.00 CutScore  90.49;  Ed  0, 0
ans =

    ' HL_56334.1  8SP9 C   67 G   71'

 scores better against   7 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -3.96, deficit  1.10, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.82, deficit  0.81, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.10, deficit  0.56, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.28, deficit -0.66, prct   0.00; 
Better:   8 Equal:   0 Score 0.00                UCUAA (   1) MLPS  -7.17 deficit   2.05 prct   0.00 CutScore  78.42;  Ed  0, 0
ans =

    ' HL_56334.1  4V9F U  125 A  129'

 scores better against   8 groups: HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -4.31, deficit  1.10, prct   0.00; HL_56131.2,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.86, deficit -1.35, prct   0.00; HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -5.95, deficit  2.06, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.34, deficit  1.69, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.81, deficit  0.14, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               UCCUUA (   1) MLPS  -7.74 deficit   2.62 prct   0.00 CutScore  72.43;  Ed  0, 0
ans =

    ' HL_56334.1  8UIW U  105 A  110'

 scores better against   4 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.57, deficit  1.18, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  4, 2, MLPS -6.69, deficit  0.78, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.70, deficit  2.28, prct   0.00; HL_56131.2,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.61, deficit  0.40, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GAGUCC (   1) MLPS  -7.77 deficit   2.65 prct   0.00 CutScore  72.14;  Ed  0, 0
ans =

    ' HL_56334.1  4OOG G   14 C   19'

 scores better against   7 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.76, deficit  0.46, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -6.10, deficit  1.21, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.69, deficit  2.28, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  4, 2, MLPS -6.86, deficit  2.67, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -7.16, deficit  1.73, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GAGUCC (   1) MLPS  -7.77 deficit   2.65 prct   0.00 CutScore  72.14;  Ed  0, 0
ans =

    ' HL_56334.1  5T16 G   16 C   21'

 scores better against   7 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.76, deficit  0.46, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -6.10, deficit  1.21, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.69, deficit  2.28, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  4, 2, MLPS -6.86, deficit  2.67, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -7.16, deficit  1.73, prct   0.00; 
Better:  17 Equal:   0 Score 0.00               UGGAAA (   1) MLPS  -8.04 deficit   2.92 prct   0.00 CutScore  69.31;  Ed  0, 0
ans =

    ' HL_56334.1  6AJK U  933 A  938'

 scores better against  17 groups: HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.07, deficit  0.73, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.62, deficit  1.56, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.72, deficit -0.38, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.73, deficit  3.97, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.87, deficit  1.67, prct   0.00; 
Better:  17 Equal:   0 Score 0.00               UGGAAA (   1) MLPS  -8.04 deficit   2.92 prct   0.00 CutScore  69.31;  Ed  0, 0
ans =

    ' HL_56334.1  6AAX U  933 A  938'

 scores better against  17 groups: HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.07, deficit  0.73, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.62, deficit  1.56, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.72, deficit -0.38, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.73, deficit  3.97, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.87, deficit  1.67, prct   0.00; 
Group 150 is from HL_60914.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_60914.1
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CUGGG (   1) MLPS  -3.25 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_60914.1  6CYT C   30 G   34'

 matches the original group, cWW-F
Group 168 is from HL_69752.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_69752.2
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   4 Equal:   0 Score 0.00                CUUAG (   1) MLPS  -5.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_69752.2  4M6D C   32 G   36'

 scores better against   4 groups: HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  0, 0, MLPS -4.32, deficit  0.00, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.65, deficit  0.00, prct   0.00; HL_48778.2,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.01, deficit  1.81, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -5.41, deficit  1.74, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               CUGUUG (   1) MLPS  -6.16 deficit   0.69 prct   0.00 CutScore  92.74;  Ed  0, 0
ans =

    ' HL_69752.2  5NFV C  -10 G   -5'

 scores better against   6 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -5.16, deficit  0.28, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.36, deficit  0.05, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.85, deficit  0.73, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 3, MLPS -5.87, deficit -0.05, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               CUGUUG (   1) MLPS  -6.16 deficit   0.69 prct   0.00 CutScore  92.74;  Ed  0, 0
ans =

    ' HL_69752.2  8Y0B C  -11 G   -6'

 scores better against   6 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -5.16, deficit  0.28, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.36, deficit  0.05, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.85, deficit  0.73, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 3, MLPS -5.87, deficit -0.05, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              CUAAGUG (   1) MLPS  -6.49 deficit   1.02 prct   0.00 CutScore  89.29;  Ed  0, 0
ans =

    ' HL_69752.2  8Y03 C   11 G   17'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00              CUAAGUG (   1) MLPS  -6.49 deficit   1.02 prct   0.00 CutScore  89.29;  Ed  0, 0
ans =

    ' HL_69752.2  5ID6 C   11 G   17'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00              CUAAGUG (   1) MLPS  -6.49 deficit   1.02 prct   0.00 CutScore  89.29;  Ed  0, 0
ans =

    ' HL_69752.2  5XUZ C  -12 G   -6'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00              CUAAGUG (   1) MLPS  -6.49 deficit   1.02 prct   0.00 CutScore  89.29;  Ed  0, 0
ans =

    ' HL_69752.2  8Y05 C  -12 G   -6'

 matches the original group, cWW-F
Group 171 is from HL_70782.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_70782.2
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:  14 Equal:   0 Score 0.00                UUUAA (   1) MLPS  -6.67 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_70782.2  6FQL U    5 A    9'

 scores better against  14 groups: HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 0, MLPS -4.45, deficit  0.13, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.73, deficit  0.08, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.28, deficit  1.61, prct   0.00; HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.28, deficit  2.27, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.40, deficit  2.20, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               CCUCAG (   1) MLPS  -7.24 deficit   0.56 prct   0.00 CutScore  94.07;  Ed  0, 0
ans =

    ' HL_70782.2  8CRE C  954 G  959'

 scores better against   4 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  2, 2, MLPS -4.72, deficit  2.78, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -6.59, deficit  2.20, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.91, deficit  3.11, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.19, deficit  2.72, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               CCUCAG (   1) MLPS  -7.24 deficit   0.56 prct   0.00 CutScore  94.07;  Ed  0, 0
ans =

    ' HL_70782.2  8P9A C  958 G  963'

 scores better against   4 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  2, 2, MLPS -4.72, deficit  2.78, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -6.59, deficit  2.20, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.91, deficit  3.11, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.19, deficit  2.72, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               GUGUCC (   1) MLPS  -7.79 deficit   1.12 prct   0.00 CutScore  88.25;  Ed  0, 0
ans =

    ' HL_70782.2  4KR9 G   10 C   15'

 scores better against   8 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -5.51, deficit  0.62, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.68, deficit  3.22, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.93, deficit  1.87, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 3, MLPS -6.17, deficit  0.25, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.42, deficit  1.30, prct   0.00; 
Group 183 is from HL_75660.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_75660.5
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CAAAG (   1) MLPS  -4.54 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_75660.5  4WF9 C  362 G  366'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                CAUAG (   1) MLPS  -4.82 deficit   0.28 prct   0.00 CutScore  97.06;  Ed  0, 0
ans =

    ' HL_75660.5  8P9A C  208 G  212'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                GAUAC (   1) MLPS  -4.95 deficit   0.42 prct   0.00 CutScore  95.61;  Ed  0, 0
ans =

    ' HL_75660.5  4V9F G  326 C  330'

 matches the original group, cWW-F
Better:   0 Equal:   0 Score 1.00                GAUAC (   1) MLPS  -4.95 deficit   0.42 prct   0.00 CutScore  95.61;  Ed  0, 0
ans =

    ' HL_75660.5  5J7L G  319 C  323'

 matches the original group, cWW-F
Better:   2 Equal:   0 Score 0.00                GAAUC (   1) MLPS  -4.95 deficit   0.42 prct   0.00 CutScore  95.61;  Ed  0, 0
ans =

    ' HL_75660.5  4V9F G  118 C  122'

 scores better against   2 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 0, MLPS -3.16, deficit  0.31, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.29, deficit  1.73, prct   0.00; 
Better:   0 Equal:   0 Score 1.00                CAGAG (   1) MLPS  -5.31 deficit   0.77 prct   0.00 CutScore  91.90;  Ed  0, 0
ans =

    ' HL_75660.5  9DFE C  319 G  323'

 matches the original group, cWW-F
Better:   3 Equal:   0 Score 0.00                GAGUC (   1) MLPS  -5.72 deficit   1.19 prct   0.00 CutScore  87.51;  Ed  0, 0
ans =

    ' HL_75660.5  8KAL G   87 C   91'

 scores better against   3 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -2.68, deficit  0.12, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  3, 1, MLPS -4.26, deficit  1.40, prct   0.00; HL_38168.1,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -5.62, deficit  0.63, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               CGAAAG (   1) MLPS  -6.03 deficit   1.49 prct   0.00 CutScore  84.29;  Ed  0, 0
ans =

    ' HL_75660.5  5U3G C   18 G   23'

 scores better against   6 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -1.76, deficit  0.00, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -4.16, deficit -0.04, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.53, deficit  0.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.25, deficit -0.85, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 0, MLPS -5.49, deficit  2.31, prct   0.00; 
Better:   2 Equal:   0 Score 0.00                CACAG (   1) MLPS  -6.05 deficit   1.52 prct   0.00 CutScore  84.04;  Ed  0, 0
ans =

    ' HL_75660.5  8CRE C  207 G  211'

 scores better against   2 groups: HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.39, deficit  1.18, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -5.98, deficit  2.20, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -6.17 deficit   1.63 prct   0.00 CutScore  82.84;  Ed  0, 0
ans =

    ' HL_75660.5  4WF9 G  122 C  127'

 scores better against   6 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.33, deficit  0.00, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.48, deficit -0.62, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.82, deficit  0.07, prct   0.00; 
Better:   8 Equal:   0 Score 0.00                CUCAG (   1) MLPS  -6.80 deficit   2.26 prct   0.00 CutScore  76.17;  Ed  0, 0
ans =

    ' HL_75660.5  7A0S C  330 G  334'

 scores better against   8 groups: HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.14, deficit  0.97, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.39, deficit  1.18, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.88, deficit  1.10, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  1, 1, MLPS -5.42, deficit  1.10, prct   0.00; HL_48778.2,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -5.64, deficit  2.44, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               AAUUUU (   1) MLPS  -6.89 deficit   2.35 prct   0.00 CutScore  75.21;  Ed  0, 0
ans =

    ' HL_75660.5  8CRE A 1756 U 1761'

 scores better against   5 groups: HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.51, deficit  1.10, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.58, deficit  1.19, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.59, deficit  0.07, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -6.36, deficit  0.43, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -6.61, deficit  1.48, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               CGUAGG (   1) MLPS  -7.08 deficit   2.54 prct   0.00 CutScore  73.25;  Ed  0, 0
ans =

    ' HL_75660.5  1WZ2 C  950 G  955'

 scores better against   6 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.46, deficit  2.45, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -5.92, deficit  2.12, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.07, deficit  1.87, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -6.09, deficit  0.57, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -6.64, deficit  4.88, prct   0.00; 
Better:  13 Equal:   0 Score 0.00                CUCUG (   1) MLPS  -7.08 deficit   2.54 prct   0.00 CutScore  73.23;  Ed  0, 0
ans =

    ' HL_75660.5  8CRE C 2543 G 2547'

 scores better against  13 groups: HL_48778.2,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.45, deficit  1.25, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.88, deficit  1.10, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.02, deficit  1.01, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.03, deficit  1.85, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -5.06, deficit  2.20, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               CUGAUG (   1) MLPS  -7.45 deficit   2.91 prct   0.00 CutScore  69.38;  Ed  0, 0
ans =

    ' HL_75660.5  7KI3 C   10 G   15'

 scores better against   8 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -2.37, deficit  0.00, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  1, 1, MLPS -5.45, deficit  1.12, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -5.61, deficit  0.73, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -5.87, deficit  0.57, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.16, deficit  1.04, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               GGUGGC (   1) MLPS  -7.98 deficit   3.45 prct   0.00 CutScore  63.70;  Ed  0, 0
ans =

    ' HL_75660.5  8K0Y G   10 C   15'

 scores better against   8 groups: HL_81100.2,  2 NTs, cWW                                     , Ed  2, 2, MLPS -5.52, deficit -0.40, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.06, deficit  2.27, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.11, deficit  1.91, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  3, 2, MLPS -6.15, deficit  1.96, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.09, deficit  1.65, prct   0.00; 
Better:   9 Equal:   0 Score 0.00               GUGGUC (   1) MLPS  -8.35 deficit   3.82 prct   0.00 CutScore  59.83;  Ed  0, 0
ans =

    ' HL_75660.5  8G9Z G   15 C  20A'

 scores better against   9 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  0, 0, MLPS -4.88, deficit  0.00, prct   0.00; HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.01, deficit  2.64, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.68, deficit  3.22, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -5.72, deficit -0.20, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.81, deficit  0.51, prct   0.00; 
Better:  13 Equal:   0 Score 0.00               CGCGUG (   1) MLPS  -8.59 deficit   4.06 prct   0.00 CutScore  57.29;  Ed  0, 0
ans =

    ' HL_75660.5  2Y9H C   11 G   16'

 scores better against  13 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.79, deficit  0.00, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  0, 0, MLPS -5.92, deficit  0.00, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -6.63, deficit  0.50, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.32, deficit  2.85, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -7.38, deficit  5.62, prct   0.00; 
Better:  15 Equal:   0 Score 0.00              CGAAUAG (   1) MLPS  -9.26 deficit   4.72 prct   0.00 CutScore  50.26;  Ed  0, 0
ans =

    ' HL_75660.5  2ZNI C   13 G   21'

 scores better against  15 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.83, deficit  4.07, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.44, deficit  0.69, prct   0.00; HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.19, deficit  2.20, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -7.25, deficit  1.81, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.27, deficit  3.21, prct   0.00; 
Group  23 is from HL_07951.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_07951.3
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00            CAGCGGGAG (   1) MLPS  -9.73 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07951.3  3WQY C 1613 G 1622'

 scores better against   3 groups: HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  1, 1, MLPS -8.51, deficit  0.99, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -8.85, deficit  1.72, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  2, 2, MLPS -9.00, deficit  1.66, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CAGCGGAAG (   1) MLPS -10.04 deficit   0.31 prct   0.00 CutScore  97.47;  Ed  0, 0
ans =

    ' HL_07951.3  1GAX C  913 G  921'

 scores better against   1 groups: HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  2, 2, MLPS -9.20, deficit  1.86, prct   0.00; 
Better:  12 Equal:   0 Score 0.00          CAGCUGGUUAG (   1) MLPS -13.76 deficit   4.02 prct   0.00 CutScore  67.22;  Ed  0, 0
ans =

    ' HL_07951.3  4RDX C   13 G   22'

 scores better against  12 groups: HL_49941.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -8.07, deficit  0.00, prct   0.00; HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.94, deficit  3.22, prct   0.00; HL_04642.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -9.99, deficit  2.12, prct   0.00; HL_80411.1,  9 NTs, cWW-F-cSH-F-F-F-F                       , Ed  3, 3, MLPS -10.61, deficit  2.34, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  2, 2, MLPS -11.30, deficit  3.96, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           UCAUCUCCAA (   1) MLPS -14.31 deficit   4.57 prct   0.00 CutScore  62.75;  Ed  0, 0
ans =

    ' HL_07951.3  9IMB U    8 A   17'

 scores better against   1 groups: HL_85434.1, 10 NTs, cWW-cWW-F-F-F-F-F-F                     , Ed  5, 3, MLPS -13.90, deficit  8.32, prct   0.00; 
Group  35 is from HL_13189.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_13189.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00                UGUAA (   1) MLPS  -5.84 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_13189.1  5D0B U   33 A   37'

 scores better against   3 groups: HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.85, deficit  0.96, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.40, deficit  2.20, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -5.65, deficit  1.11, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               CCUCGG (   1) MLPS  -7.26 deficit   1.41 prct   0.00 CutScore  85.12;  Ed  0, 0
ans =

    ' HL_13189.1  8P9A C  543 G  548'

 scores better against   5 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  1, 1, MLPS -4.34, deficit  2.40, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.10, deficit  2.43, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 1, MLPS -6.37, deficit  0.45, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -6.59, deficit  2.20, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -7.02, deficit  3.22, prct   0.00; 
Group  37 is from HL_13963.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_13963.3
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00               GGCGAC (   1) MLPS  -6.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_13963.3  361D G   86 C   90'

 scores better against   3 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.97, deficit  1.17, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.67, deficit  1.20, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -5.72, deficit  3.96, prct   0.00; 
Better:   3 Equal:   0 Score 0.00               GGCGAC (   1) MLPS  -6.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_13963.3  361D G   86 C   90'

 scores better against   3 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.97, deficit  1.17, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.67, deficit  1.20, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -5.72, deficit  3.96, prct   0.00; 
Better:   4 Equal:   0 Score 0.00            GCCUAGGAC (   1) MLPS -11.82 deficit   5.45 prct   0.00 CutScore  42.59;  Ed  0, 0
ans =

    ' HL_13963.3  2ZZM G   31 C   39'

 scores better against   4 groups: HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  4, 2, MLPS -9.58, deficit  3.38, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  2, 2, MLPS -10.45, deficit  4.03, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  5, 3, MLPS -11.05, deficit  5.88, prct   0.00; HL_80599.2,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  4, 2, MLPS -11.29, deficit  5.99, prct   0.00; 
Better:   8 Equal:   0 Score 0.00             GCUUAUGC (   1) MLPS -12.13 deficit   5.77 prct   0.00 CutScore  39.31;  Ed  0, 0
ans =

    ' HL_13963.3  5J7L G 1171 C 1178'

 scores better against   8 groups: HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  5, 3, MLPS -6.80, deficit  2.16, prct   0.00; HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  2, 2, MLPS -8.87, deficit  4.44, prct   0.00; HL_20535.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -9.53, deficit -0.87, prct   0.00; HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -9.70, deficit  2.31, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  1, 1, MLPS -10.29, deficit  6.09, prct   0.00; 
Group  57 is from HL_22135.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_22135.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                UCCAA (   1) MLPS  -3.21 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22135.1  6FQ3 U    5 A    9'

 matches the original group, cWW-F-F
Group  83 is from HL_32392.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_32392.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                UUUGA (   1) MLPS  -3.67 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_32392.1  5B2P U   82 A   86'

 matches the original group, cWW-F-F
Better:   1 Equal:   0 Score 0.00               UUUCGA (   1) MLPS  -4.36 deficit   0.69 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_32392.1  5J7L U  137 A  142'

 scores better against   1 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  2, 0, MLPS -3.13, deficit  1.19, prct   0.00; 
Group  94 is from HL_37344.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_37344.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00              CCUUGAG (   1) MLPS  -6.49 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37344.1  5J7L C  840 G  846'

 scores better against   1 groups: HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.10, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             CCAUUCGG (   1) MLPS  -8.10 deficit   1.62 prct   0.00 CutScore  84.74;  Ed  0, 0
ans =

    ' HL_37344.1  8P9A C 2567 G 2574'

 matches the original group, cWW-F-F
Group 116 is from HL_48417.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_48417.5
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00               CAUUUG (   1) MLPS  -5.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_48417.5  8CRE C 1344 G 1349'

 scores better against   3 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.49, deficit  1.10, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.58, deficit  0.06, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.61, deficit  1.20, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GAUUAC (   1) MLPS  -7.02 deficit   1.08 prct   0.00 CutScore  88.60;  Ed  0, 0
ans =

    ' HL_48417.5  2C4Q G    8 C   13'

 scores better against   7 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.78, deficit  1.57, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.00, deficit  2.20, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -6.03, deficit  0.51, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.35, deficit  1.81, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.66, deficit  2.27, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GAUUAC (   1) MLPS  -7.02 deficit   1.08 prct   0.00 CutScore  88.60;  Ed  0, 0
ans =

    ' HL_48417.5  2IZN G    8 C   13'

 scores better against   7 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.78, deficit  1.57, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.00, deficit  2.20, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -6.03, deficit  0.51, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.35, deficit  1.81, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.66, deficit  2.27, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               CAUAGG (   1) MLPS  -7.17 deficit   1.23 prct   0.00 CutScore  87.00;  Ed  0, 0
ans =

    ' HL_48417.5  5E08 C    6 G   11'

 scores better against   4 groups: HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -6.09, deficit  0.57, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.69, deficit  2.49, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.70, deficit  2.16, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.95, deficit  0.85, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               GAUCAC (   1) MLPS  -7.36 deficit   1.43 prct   0.00 CutScore  84.98;  Ed  0, 0
ans =

    ' HL_48417.5  5MSF G    7 C   12'

 scores better against   5 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.90, deficit  1.10, prct   0.00; HL_47787.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -5.93, deficit  2.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -6.66, deficit  0.56, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.30, deficit  2.82, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.31, deficit  1.46, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               GAUCAC (   1) MLPS  -7.36 deficit   1.43 prct   0.00 CutScore  84.98;  Ed  0, 0
ans =

    ' HL_48417.5  1U1Y G    7 C   12'

 scores better against   5 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.90, deficit  1.10, prct   0.00; HL_47787.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -5.93, deficit  2.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -6.66, deficit  0.56, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.30, deficit  2.82, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.31, deficit  1.46, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CAUGUGG (   1) MLPS  -7.86 deficit   1.93 prct   0.00 CutScore  79.73;  Ed  0, 0
ans =

    ' HL_48417.5  6D12 C  328 G  334'

 scores better against   1 groups: HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.37, deficit  2.27, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CAUGUGG (   1) MLPS  -7.86 deficit   1.93 prct   0.00 CutScore  79.73;  Ed  0, 0
ans =

    ' HL_48417.5  6D12 C  309 G  315'

 scores better against   1 groups: HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.37, deficit  2.27, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              AAUUAUU (   1) MLPS  -7.90 deficit   1.97 prct   0.00 CutScore  79.29;  Ed  0, 0
ans =

    ' HL_48417.5  8UO6 A   77 U   83'

 scores better against   6 groups: HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 1, MLPS -6.23, deficit  1.80, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -7.12, deficit  1.60, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.42, deficit  2.08, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -7.57, deficit  0.01, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -7.72, deficit  3.07, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               CGCGUG (   1) MLPS  -7.93 deficit   2.00 prct   0.00 CutScore  78.97;  Ed  0, 0
ans =

    ' HL_48417.5  2Y9H C   11 G   16'

 scores better against   7 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.79, deficit  0.00, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  0, 0, MLPS -5.92, deficit  0.00, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -6.63, deficit  0.50, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.32, deficit  2.85, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -7.38, deficit  5.62, prct   0.00; 
Better:   8 Equal:   0 Score 0.00                CUGGG (   1) MLPS  -7.96 deficit   2.03 prct   0.00 CutScore  78.67;  Ed  0, 0
ans =

    ' HL_48417.5  6XH2 C   30 G   34'

 scores better against   8 groups: HL_60914.1,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -3.25, deficit  0.00, prct   0.00; HL_35941.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.88, deficit  1.10, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -4.92, deficit  0.60, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -5.41, deficit  1.74, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -6.23, deficit  0.76, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               CCUUGG (   1) MLPS  -7.97 deficit   2.04 prct   0.00 CutScore  78.54;  Ed  0, 0
ans =

    ' HL_48417.5  4LFB C 190B G 190G'

 scores better against   7 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.49, deficit  1.10, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  2, 0, MLPS -6.12, deficit  0.20, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.19, deficit  1.67, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -7.20, deficit  3.53, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.26, deficit  1.41, prct   0.00; 
Better:  13 Equal:   0 Score 0.00               CAACAG (   1) MLPS  -8.03 deficit   2.09 prct   0.00 CutScore  78.00;  Ed  0, 0
ans =

    ' HL_48417.5  7MSF C    5 G   10'

 scores better against  13 groups: HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  2, 1, MLPS -5.49, deficit  3.09, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.59, deficit -0.51, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -6.15, deficit  1.67, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.23, deficit  1.90, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -6.35, deficit  0.91, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CAUGUAG (   1) MLPS  -8.12 deficit   2.19 prct   0.00 CutScore  77.00;  Ed  0, 0
ans =

    ' HL_48417.5  5UD5 C   13 G   21'

 scores better against   3 groups: HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.54, deficit  2.48, prct   0.00; HL_47787.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.82, deficit  3.10, prct   0.00; HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -7.75, deficit  1.30, prct   0.00; 
Better:  10 Equal:   0 Score 0.00              CUUUUUG (   1) MLPS  -8.28 deficit   2.34 prct   0.00 CutScore  75.35;  Ed  0, 0
ans =

    ' HL_48417.5  6DTD C   16 G   22'

 scores better against  10 groups: HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 1, MLPS -5.14, deficit  0.70, prct   0.00; HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.72, deficit  1.33, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -6.11, deficit  0.64, prct   0.00; HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.46, deficit  1.36, prct   0.00; HL_28075.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -7.07, deficit -0.75, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              UAGUGUA (   1) MLPS  -8.52 deficit   2.59 prct   0.00 CutScore  72.75;  Ed  0, 0
ans =

    ' HL_48417.5  5AMQ U    3 A    9'

 scores better against   3 groups: HL_89893.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.92, deficit  2.28, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -7.63, deficit  0.07, prct   0.00; HL_28075.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -8.26, deficit  0.44, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              GAGUUAC (   1) MLPS  -8.69 deficit   2.76 prct   0.00 CutScore  70.96;  Ed  0, 0
ans =

    ' HL_48417.5  9BZC G   24 C   30'

 scores better against   2 groups: HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.07, deficit  1.02, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -8.66, deficit  3.14, prct   0.00; 
Better:  11 Equal:   0 Score 0.00               ACCUAU (   1) MLPS  -8.87 deficit   2.94 prct   0.00 CutScore  69.07;  Ed  0, 0
ans =

    ' HL_48417.5  3SKI A   67 U   72'

 scores better against  11 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -6.68, deficit  2.29, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.23, deficit  2.76, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.33, deficit  1.49, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.34, deficit  0.97, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  3, 2, MLPS -7.36, deficit  0.68, prct   0.00; 
Better:  11 Equal:   0 Score 0.00               ACCUAU (   1) MLPS  -8.87 deficit   2.94 prct   0.00 CutScore  69.07;  Ed  0, 0
ans =

    ' HL_48417.5  3SKL A   66 U   71'

 scores better against  11 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -6.68, deficit  2.29, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.23, deficit  2.76, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.33, deficit  1.49, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.34, deficit  0.97, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  3, 2, MLPS -7.36, deficit  0.68, prct   0.00; 
Better:   8 Equal:   0 Score 0.00              CGUAUUG (   1) MLPS  -9.01 deficit   3.08 prct   0.00 CutScore  67.62;  Ed  0, 0
ans =

    ' HL_48417.5  8P9A C  777 G  783'

 scores better against   8 groups: HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -7.11, deficit  1.59, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.30, deficit  0.51, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 2, MLPS -7.92, deficit  2.48, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.01, deficit  1.88, prct   0.00; HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  2, 2, MLPS -8.22, deficit  3.58, prct   0.00; 
Better:   7 Equal:   0 Score 0.00              CGAUUUG (   1) MLPS  -9.02 deficit   3.09 prct   0.00 CutScore  67.48;  Ed  0, 0
ans =

    ' HL_48417.5  7VTI C   15 G   21'

 scores better against   7 groups: HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -7.11, deficit  1.59, prct   0.00; HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.19, deficit  2.20, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -7.28, deficit  1.94, prct   0.00; HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.97, deficit  1.92, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  2, 2, MLPS -8.20, deficit  0.64, prct   0.00; 
Better:   9 Equal:   0 Score 0.00              UAAUUCA (   1) MLPS -10.58 deficit   4.65 prct   0.00 CutScore  51.07;  Ed  0, 0
ans =

    ' HL_48417.5  8P9A U  450 A  456'

 scores better against   9 groups: HL_38168.1,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -7.08, deficit  2.09, prct   0.00; HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.28, deficit  2.28, prct   0.00; HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.80, deficit  1.75, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.32, deficit  2.98, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -8.74, deficit  3.22, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              UUCGGGA (   1) MLPS -10.61 deficit   4.68 prct   0.00 CutScore  50.75;  Ed  0, 0
ans =

    ' HL_48417.5  1H4S U   32 A   38'

 scores better against   2 groups: HL_30680.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.81, deficit  2.34, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -8.97, deficit  3.30, prct   0.00; 
Better:   9 Equal:   0 Score 0.00              CGACACG (   1) MLPS -12.42 deficit   6.48 prct   0.00 CutScore  31.77;  Ed  0, 0
ans =

    ' HL_48417.5  8CRE C  448 G  454'

 scores better against   9 groups: HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.19, deficit  2.20, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 2, MLPS -7.27, deficit  1.60, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.45, deficit  2.32, prct   0.00; HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.70, deficit  4.79, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.95, deficit  2.85, prct   0.00; 
Better:   8 Equal:   0 Score 0.00           CAGUUGGUAG (   1) MLPS -13.61 deficit   7.68 prct   0.00 CutScore  19.19;  Ed  0, 0
ans =

    ' HL_48417.5  5E7K C   13 G   22'

 scores better against   8 groups: HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -7.70, deficit  0.35, prct   0.00; HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  0, 0, MLPS -7.77, deficit  0.25, prct   0.00; HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -7.79, deficit  1.10, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -7.86, deficit  0.73, prct   0.00; HL_04642.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -9.47, deficit  1.60, prct   0.00; 
Better:  12 Equal:   0 Score 0.00          CAGUUGGUUAG (   1) MLPS -14.39 deficit   8.45 prct   0.00 CutScore  11.01;  Ed  0, 0
ans =

    ' HL_48417.5  4V9K C   13 G   22'

 scores better against  12 groups: HL_04642.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -8.89, deficit  1.02, prct   0.00; HL_49941.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -9.68, deficit  1.61, prct   0.00; HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.94, deficit  3.22, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -10.65, deficit  3.31, prct   0.00; HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  1, 1, MLPS -10.76, deficit  3.24, prct   0.00; 
Group 120 is from HL_50006.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50006.2
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:  10 Equal:   0 Score 0.00               CUUCGG (   1) MLPS  -8.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50006.2  8CRE C  228 G  233'

 scores better against  10 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -1.94, deficit  0.00, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.48, deficit  0.00, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.49, deficit  0.82, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.92, deficit  2.12, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -6.12, deficit  0.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CCUUUCACG (   1) MLPS  -8.33 deficit   0.10 prct   0.00 CutScore  98.99;  Ed  0, 0
ans =

    ' HL_50006.2  5HR7 C   31 G   39'

 scores better against   1 groups: HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -7.75, deficit  2.15, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CCUUUCACG (   1) MLPS  -8.33 deficit   0.10 prct   0.00 CutScore  98.99;  Ed  0, 0
ans =

    ' HL_50006.2  5HR6 C   31 G   39'

 scores better against   1 groups: HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -7.75, deficit  2.15, prct   0.00; 
Better:  18 Equal:   0 Score 0.00               CGAAAG (   1) MLPS  -9.01 deficit   0.78 prct   0.00 CutScore  91.82;  Ed  0, 0
ans =

    ' HL_50006.2  7D81 C   26 G   31'

 scores better against  18 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -1.76, deficit  0.00, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -4.16, deficit -0.04, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.53, deficit  0.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.25, deficit -0.85, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 0, MLPS -5.49, deficit  2.31, prct   0.00; 
Better:   7 Equal:   0 Score 0.00             GAAGGAUC (   1) MLPS -12.95 deficit   4.72 prct   0.00 CutScore  50.30;  Ed  0, 0
ans =

    ' HL_50006.2  4KJI G    5 C   12'

 scores better against   7 groups: HL_22622.1,  6 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.08, deficit -0.39, prct   0.00; HL_47854.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.11, deficit  2.20, prct   0.00; HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -8.68, deficit  2.63, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  3, 3, MLPS -9.29, deficit  3.85, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -9.90, deficit  2.89, prct   0.00; 
Group 136 is from HL_56131.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_56131.2
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00              UACUAUA (   1) MLPS  -7.21 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_56131.2  4ILL U    8 A   14'

 scores better against   1 groups: HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  4, 2, MLPS -6.90, deficit  2.46, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              UACUAUA (   1) MLPS  -7.21 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_56131.2  4ILM U    8 A   14'

 scores better against   1 groups: HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  4, 2, MLPS -6.90, deficit  2.46, prct   0.00; 
Better:   8 Equal:   0 Score 0.00                 GGUC (   1) MLPS  -8.32 deficit   1.11 prct   0.00 CutScore  88.34;  Ed  0, 0
ans =

    ' HL_56131.2  2PJP G   22 C   25'

 scores better against   8 groups: HL_94980.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -4.09, deficit  1.17, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  2, 0, MLPS -4.19, deficit  0.00, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -4.23, deficit  0.22, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -5.51, deficit -0.34, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -6.20, deficit -0.47, prct   0.00; 
Better:   7 Equal:   0 Score 0.00                UUGCG (   1) MLPS  -9.27 deficit   2.06 prct   0.00 CutScore  78.33;  Ed  0, 0
ans =

    ' HL_56131.2  3WQY U 1633 G 1637'

 scores better against   7 groups: HL_60914.1,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -6.96, deficit  3.71, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  3, 2, MLPS -6.99, deficit  2.66, prct   0.00; HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.29, deficit  3.40, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -7.52, deficit  2.40, prct   0.00; HL_43517.1,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -8.41, deficit  3.76, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            CCUCCUAAG (   1) MLPS -10.04 deficit   2.83 prct   0.00 CutScore  70.22;  Ed  0, 0
ans =

    ' HL_56131.2  2ZUE C  931 G  939'

 scores better against   5 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 1, MLPS -6.06, deficit  1.32, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 2, MLPS -8.21, deficit  2.63, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.76, deficit  2.20, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  5, 3, MLPS -9.59, deficit  3.39, prct   0.00; HL_72628.1,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  3, 3, MLPS -9.96, deficit  4.34, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            GCUGCGAAC (   1) MLPS -10.44 deficit   3.23 prct   0.00 CutScore  65.96;  Ed  0, 0
ans =

    ' HL_56131.2  1F7U G  931 C  939'

 scores better against   5 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  0, 0, MLPS -6.43, deficit  1.68, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -7.72, deficit  2.14, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -7.80, deficit  2.21, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.84, deficit  2.27, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  5, 3, MLPS -9.58, deficit  3.38, prct   0.00; 
Group 138 is from HL_56676.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_56676.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00               CUUCGG (   1) MLPS  -4.48 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_56676.1  6DLR C   27 G   32'

 scores better against   1 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -1.94, deficit  0.00, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               UGUAAG (   1) MLPS  -5.21 deficit   0.74 prct   0.00 CutScore  92.24;  Ed  0, 0
ans =

    ' HL_56676.1  8HNT U  103 G  108'

 scores better against   2 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.00, deficit  1.99, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.16, deficit  3.40, prct   0.00; 
Group 141 is from HL_57875.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_57875.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00               GGUUUC (   1) MLPS  -5.52 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_57875.1  2A64 G   31 C   36'

 scores better against   1 groups: HL_27483.1,  4 NTs, cWW-F                                   , Ed  3, 2, MLPS -5.13, deficit  0.94, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CAUUAG (   1) MLPS  -6.09 deficit   0.57 prct   0.00 CutScore  94.03;  Ed  0, 0
ans =

    ' HL_57875.1  8CRE C  729 G  734'

 scores better against   1 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.73, deficit  1.53, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UGUAGG (   1) MLPS  -6.73 deficit   1.20 prct   0.00 CutScore  87.33;  Ed  0, 0
ans =

    ' HL_57875.1  3NDB U  162 G  167'

 scores better against   1 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -3.90, deficit  0.89, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              AAUUAUU (   1) MLPS  -7.12 deficit   1.60 prct   0.00 CutScore  83.18;  Ed  0, 0
ans =

    ' HL_57875.1  8UO6 A   77 U   83'

 scores better against   1 groups: HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 1, MLPS -6.23, deficit  1.80, prct   0.00; 
Better:   8 Equal:   0 Score 0.00              GUGAAGC (   1) MLPS  -9.69 deficit   4.16 prct   0.00 CutScore  56.18;  Ed  0, 0
ans =

    ' HL_57875.1  6N5P G   58 C   64'

 scores better against   8 groups: HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -6.74, deficit  1.61, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -7.18, deficit  1.71, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.26, deficit  1.82, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 3, MLPS -7.63, deficit -1.10, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 2, MLPS -8.50, deficit  2.83, prct   0.00; 
Group 158 is from HL_66103.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_66103.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00              CGCAUAG (   1) MLPS  -6.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_66103.1  3SIU C   40 G   46'

 scores better against   1 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  0, 0, MLPS -6.15, deficit  0.72, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CUUCGUG (   1) MLPS  -6.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_66103.1  6WBR C   56 G   62'

 scores better against   1 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  1, 1, MLPS -6.61, deficit  4.67, prct   0.00; 
Group 163 is from HL_67667.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_67667.2
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CUGUUCG (   1) MLPS  -4.39 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_67667.2  7PMQ C   30 G   36'

 matches the original group, cWW-F-F
Better:   0 Equal:   0 Score 1.00              CUGUUCG (   1) MLPS  -4.39 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_67667.2  7PMM C   21 G   27'

 matches the original group, cWW-F-F
Better:   0 Equal:   0 Score 1.00              CUGUUCG (   1) MLPS  -4.39 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_67667.2  3MOJ C 2551 G 2557'

 matches the original group, cWW-F-F
Group 191 is from HL_78677.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_78677.1
This group is considered to be structured ***************************
Number of NTs:  3  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                 UUCG (   1) MLPS  -3.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_78677.1  2CZJ U   26 G   29'

 matches the original group, cWW-F-F
Better:   0 Equal:   0 Score 1.00                GGUAC (   1) MLPS  -4.92 deficit   1.03 prct   0.00 CutScore  89.11;  Ed  0, 0
ans =

    ' HL_78677.1  8CRE G 2088 C 2092'

 matches the original group, cWW-F-F
Group 241 is from HL_94980.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_94980.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                 CUUG (   1) MLPS  -2.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_94980.1  8CRE C  274 G  277'

 matches the original group, cWW-F-F
Group 245 is from HL_97983.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_97983.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            AGGGAUUUU (   1) MLPS  -8.19 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_97983.1  3TRZ A    5 U   13'

 matches the original group, cWW-F-F
Group  15 is from HL_04783.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_04783.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   7 Equal:   0 Score 0.00               CGAAAG (   1) MLPS  -6.10 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04783.2  5J7L C 1806 G 1811'

 scores better against   7 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -1.76, deficit  0.00, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -4.16, deficit -0.04, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.53, deficit  0.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.25, deficit -0.85, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 0, MLPS -5.49, deficit  2.31, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -6.19 deficit   0.10 prct   0.00 CutScore  98.97;  Ed  0, 0
ans =

    ' HL_04783.2  3OXE G   49 C   54'

 scores better against   7 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.33, deficit  0.00, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.48, deficit -0.62, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.82, deficit  0.07, prct   0.00; 
Better:  10 Equal:   0 Score 0.00                CGUAG (   1) MLPS  -6.80 deficit   0.71 prct   0.00 CutScore  92.55;  Ed  0, 0
ans =

    ' HL_04783.2  4C9D C   21 G   25'

 scores better against  10 groups: HL_78677.1,  3 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -5.00, deficit  1.11, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.20, deficit  0.66, prct   0.00; HL_22135.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -5.49, deficit  2.28, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.74, deficit  2.56, prct   0.00; HL_13189.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -5.84, deficit -0.00, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               CUAGCG (   1) MLPS  -7.77 deficit   1.67 prct   0.00 CutScore  82.39;  Ed  0, 0
ans =

    ' HL_04783.2  8G9Z C  47C G  47H'

 scores better against   4 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.96, deficit  0.21, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -6.56, deficit  4.80, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 2, MLPS -6.85, deficit  1.41, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -7.42, deficit  2.29, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               UGUAAG (   1) MLPS  -8.24 deficit   2.14 prct   0.00 CutScore  77.46;  Ed  0, 0
ans =

    ' HL_04783.2  1OOA U   13 G   18'

 scores better against   8 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.00, deficit  1.99, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.16, deficit  3.40, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -5.21, deficit  0.74, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -6.97, deficit  0.87, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.24, deficit  1.71, prct   0.00; 
Better:  14 Equal:   0 Score 0.00              GGAACAC (   1) MLPS  -9.18 deficit   3.09 prct   0.00 CutScore  67.53;  Ed  0, 0
ans =

    ' HL_04783.2  3IGI G  135 C  141'

 scores better against  14 groups: HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.09, deficit  2.17, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -6.22, deficit  1.10, prct   0.00; HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  1, 1, MLPS -6.29, deficit  3.89, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -6.78, deficit  5.03, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -7.37, deficit  1.93, prct   0.00; 
Better:   8 Equal:   0 Score 0.00              CGCAACG (   1) MLPS  -9.78 deficit   3.69 prct   0.00 CutScore  61.21;  Ed  0, 0
ans =

    ' HL_04783.2  4V9F C  195 G  201'

 scores better against   8 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -7.98, deficit  6.22, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 2, MLPS -8.12, deficit  2.45, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -8.38, deficit  3.04, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.55, deficit  0.15, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.86, deficit  2.73, prct   0.00; 
Better:  13 Equal:   0 Score 0.00            AUUGAAAAU (   1) MLPS -11.57 deficit   5.47 prct   0.00 CutScore  42.39;  Ed  0, 0
ans =

    ' HL_04783.2  3FOZ A   31 U   39'

 scores better against  13 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  0, 0, MLPS -6.16, deficit  1.41, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -7.14, deficit  1.56, prct   0.00; HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  3, 1, MLPS -7.69, deficit  1.19, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.86, deficit  2.29, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  3, 1, MLPS -9.28, deficit  3.49, prct   0.00; 
Better:  10 Equal:   0 Score 0.00            AUUGCAAAU (   1) MLPS -12.53 deficit   6.43 prct   0.00 CutScore  32.33;  Ed  0, 0
ans =

    ' HL_04783.2  3EPH A   31 U   39'

 scores better against  10 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  2, 0, MLPS -6.59, deficit  0.10, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.63, deficit  1.05, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  0, 0, MLPS -7.12, deficit  2.37, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  2, 2, MLPS -9.82, deficit  4.65, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -9.96, deficit  3.39, prct   0.00; 
Group  21 is from HL_07886.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_07886.3
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              UGAAGGA (   1) MLPS  -5.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07886.3  8JY0 U   30 A   36'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00              UGAAGGA (   1) MLPS  -5.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07886.3  9DXL U   14 A   20'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGGAAAGG (   1) MLPS  -6.83 deficit   1.40 prct   0.00 CutScore  85.29;  Ed  0, 0
ans =

    ' HL_07886.3  8CRE C 3205 G 3212'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGGAAAGG (   1) MLPS  -6.83 deficit   1.40 prct   0.00 CutScore  85.29;  Ed  0, 0
ans =

    ' HL_07886.3  8P9A C 3240 G 3247'

 matches the original group, cWW-F-F-F
Better:   1 Equal:   0 Score 0.00             GAUAUGGC (   1) MLPS  -9.62 deficit   4.19 prct   0.00 CutScore  55.91;  Ed  0, 0
ans =

    ' HL_07886.3  2QUX G   10 C   17'

 scores better against   1 groups: HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -8.80, deficit  1.42, prct   0.00; 
Better:  26 Equal:   0 Score 0.00                AUUUU (   1) MLPS -10.37 deficit   4.93 prct   0.00 CutScore  48.07;  Ed  0, 0
ans =

    ' HL_07886.3  5B2P A   64 U   68'

 scores better against  26 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.38, deficit -0.92, prct   0.00; HL_32346.4,  3 NTs, cWW-F                                   , Ed  2, 0, MLPS -4.52, deficit  0.51, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.81, deficit -0.31, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  3, 1, MLPS -4.89, deficit  0.57, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  4, 2, MLPS -5.37, deficit  2.51, prct   0.00; 
Group  24 is from HL_08100.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_08100.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CCUUGUG (   1) MLPS  -5.10 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_08100.1  8P9A C 3193 G 3199'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00              CUUUAAG (   1) MLPS  -5.34 deficit   0.25 prct   0.00 CutScore  97.55;  Ed  0, 0
ans =

    ' HL_08100.1  5J7L C 2795 G 2801'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00              CCUCGCG (   1) MLPS  -5.94 deficit   0.85 prct   0.00 CutScore  91.60;  Ed  0, 0
ans =

    ' HL_08100.1  5J7L C 1727 G 1733'

 matches the original group, cWW-F-F-F
Better:   1 Equal:   0 Score 0.00              CUUUUGG (   1) MLPS  -6.46 deficit   1.36 prct   0.00 CutScore  86.47;  Ed  0, 0
ans =

    ' HL_08100.1  5WTI C   12 G   18'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -5.72, deficit  1.33, prct   0.00; 
Group  28 is from HL_09452.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_09452.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            UAGGGGCUA (   1) MLPS  -8.71 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_09452.1  2ZZN U   13 A   22'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00            UAGGGGCUA (   1) MLPS  -8.71 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_09452.1  5X6B U   13 A   21'

 matches the original group, cWW-F-F-F
Better:   3 Equal:   0 Score 0.00             GCUUAGGC (   1) MLPS  -9.84 deficit   1.12 prct   0.00 CutScore  90.32;  Ed  0, 0
ans =

    ' HL_09452.1  5J7L G  543 C  550'

 scores better against   3 groups: HL_50318.1,  6 NTs, cWW-cSH-F-F                             , Ed  5, 3, MLPS -7.61, deficit  1.59, prct   0.00; HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -9.15, deficit  1.77, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -9.32, deficit  2.84, prct   0.00; 
Group  67 is from HL_26631.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_26631.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CAGUG (   1) MLPS  -2.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_26631.1  3SNP C   14 G   18'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CAGUG (   1) MLPS  -2.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_26631.1  3SN2 C   14 G   18'

 matches the original group, cWW-F-F-F
Group  77 is from HL_29966.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_29966.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               AAAUUU (   1) MLPS  -4.41 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_29966.1  6IV9 A  -21 U  -16'

 matches the original group, cWW-F-F-F
Group 109 is from HL_43517.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_43517.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CUUCG (   1) MLPS  -4.65 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_43517.1  8XZL C   28 G   32'

 matches the original group, cWW-F-F-F
Better:   2 Equal:   0 Score 0.00              GUUUAUC (   1) MLPS  -6.04 deficit   1.39 prct   0.00 CutScore  85.41;  Ed  0, 0
ans =

    ' HL_43517.1  2OZB G   35 C   41'

 scores better against   2 groups: HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  0, 0, MLPS -4.44, deficit  0.00, prct   0.00; HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.54, deficit  0.45, prct   0.00; 
Group 118 is from HL_49922.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_49922.4
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               UAGUAA (   1) MLPS  -4.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49922.4  6QCW U    3 A    8'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               UAGUAA (   1) MLPS  -4.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49922.4  5FMZ U    3 A    8'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               UAGUAA (   1) MLPS  -4.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49922.4  7Z42 U    3 A    8'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               UAGUAA (   1) MLPS  -4.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49922.4  4WSB U    3 A    8'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               UAGUAA (   1) MLPS  -4.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49922.4  9F37 U    3 A    8'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               UAGUAA (   1) MLPS  -4.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49922.4  7Z4O U    3 A    8'

 matches the original group, cWW-F-F-F
Better:   6 Equal:   0 Score 0.00              CAAAAUG (   1) MLPS  -7.65 deficit   3.59 prct   0.00 CutScore  62.23;  Ed  0, 0
ans =

    ' HL_49922.4  7EL1 C   59 G   65'

 scores better against   6 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 1, MLPS -5.67, deficit  0.33, prct   0.00; HL_13529.1,  7 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -5.74, deficit -0.70, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 2, MLPS -7.05, deficit -0.51, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -7.06, deficit  0.92, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -7.13, deficit  0.12, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              CAAAAUG (   1) MLPS  -7.65 deficit   3.59 prct   0.00 CutScore  62.23;  Ed  0, 0
ans =

    ' HL_49922.4  7ENI C   59 G   65'

 scores better against   6 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 1, MLPS -5.67, deficit  0.33, prct   0.00; HL_13529.1,  7 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -5.74, deficit -0.70, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 2, MLPS -7.05, deficit -0.51, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -7.06, deficit  0.92, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -7.13, deficit  0.12, prct   0.00; 
Better:   7 Equal:   0 Score 0.00              CUUAUCG (   1) MLPS  -8.58 deficit   4.52 prct   0.00 CutScore  52.43;  Ed  0, 0
ans =

    ' HL_49922.4  4WF9 C 2236 G 2242'

 scores better against   7 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -6.34, deficit  1.95, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  3, 3, MLPS -7.25, deficit -0.98, prct   0.00; HL_38168.1,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -7.97, deficit  2.98, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -8.22, deficit  1.54, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.35, deficit -0.05, prct   0.00; 
Better:   7 Equal:   0 Score 0.00              GUAAUCC (   1) MLPS  -8.68 deficit   4.62 prct   0.00 CutScore  51.36;  Ed  0, 0
ans =

    ' HL_49922.4  5J7L G 2209 C 2215'

 scores better against   7 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.72, deficit  0.97, prct   0.00; HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.27, deficit  2.27, prct   0.00; HL_38168.1,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -7.58, deficit  2.59, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -7.66, deficit  2.22, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  4, 3, MLPS -8.16, deficit -0.08, prct   0.00; 
Group 123 is from HL_50537.6 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50537.6
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00            GCUGUUAAC (   1) MLPS  -8.08 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50537.6  3KFU G   31 C   39'

 scores better against   3 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -6.19, deficit  1.44, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -7.38, deficit  1.80, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -7.74, deficit  1.17, prct   0.00; 
Better:   3 Equal:   0 Score 0.00            ACUGUUAAU (   1) MLPS  -8.09 deficit   0.01 prct   0.00 CutScore  99.91;  Ed  0, 0
ans =

    ' HL_50537.6  4WJ4 A   31 U   39'

 scores better against   3 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -6.19, deficit  1.45, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -7.19, deficit  1.61, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -7.76, deficit  1.19, prct   0.00; 
Better:   2 Equal:   0 Score 0.00             CCAGUUAG (   1) MLPS  -9.92 deficit   1.84 prct   0.00 CutScore  83.68;  Ed  0, 0
ans =

    ' HL_50537.6  6MJ0 C   32 G   39'

 scores better against   2 groups: HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  0, 0, MLPS -6.70, deficit  0.00, prct   0.00; HL_02817.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.58, deficit  2.79, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CUUGUCGCG (   1) MLPS -10.41 deficit   2.33 prct   0.00 CutScore  79.33;  Ed  0, 0
ans =

    ' HL_50537.6  1IL2 C  931 G  939'

 scores better against   2 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -8.86, deficit  3.29, prct   0.00; HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  2, 2, MLPS -9.46, deficit  3.89, prct   0.00; 
Group 132 is from HL_53890.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_53890.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   6 Equal:   0 Score 0.00               AGAAUU (   1) MLPS  -6.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_53890.2  7A0S A  202 U  207'

 scores better against   6 groups: HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.07, deficit  1.89, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.39, deficit  1.06, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.71, deficit  3.95, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.87, deficit  1.67, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.06, deficit  0.31, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AAAAUU (   1) MLPS  -6.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_53890.2  4WF9 A  228 U  233'

 scores better against   2 groups: HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.51, deficit  1.10, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.86, deficit  0.26, prct   0.00; 
Better:   9 Equal:   0 Score 0.00               AGAAAU (   1) MLPS  -6.50 deficit   0.37 prct   0.00 CutScore  96.13;  Ed  0, 0
ans =

    ' HL_53890.2  9DFE A  225 U  230'

 scores better against   9 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.27, deficit  1.51, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -4.40, deficit  0.20, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.54, deficit  0.21, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.49, deficit -0.61, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.82, deficit  0.07, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               CGCAAG (   1) MLPS  -6.63 deficit   0.50 prct   0.00 CutScore  94.76;  Ed  0, 0
ans =

    ' HL_53890.2  2NUE C   21 G   26'

 scores better against   5 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.56, deficit  1.80, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.12, deficit  1.94, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.14, deficit  1.81, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -6.22, deficit  1.75, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               CAACAG (   1) MLPS  -7.15 deficit   1.02 prct   0.00 CutScore  89.28;  Ed  0, 0
ans =

    ' HL_53890.2  8CRE C   68 G   73'

 scores better against   8 groups: HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  2, 1, MLPS -5.49, deficit  3.09, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.59, deficit -0.51, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -6.15, deficit  1.67, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.23, deficit  1.90, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -6.35, deficit  0.91, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               CAACCG (   1) MLPS  -7.74 deficit   1.61 prct   0.00 CutScore  83.10;  Ed  0, 0
ans =

    ' HL_53890.2  8P9A C   69 G   74'

 scores better against   5 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  0, 0, MLPS -5.43, deficit  0.00, prct   0.00; HL_47787.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.69, deficit  1.96, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.93, deficit -0.17, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.71, deficit  2.29, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.91, deficit  2.44, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               CCUUUG (   1) MLPS  -8.12 deficit   1.99 prct   0.00 CutScore  79.06;  Ed  0, 0
ans =

    ' HL_53890.2  8P9A C  190 G  195'

 scores better against   8 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.39, deficit  0.00, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 1, MLPS -6.32, deficit  0.40, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -6.47, deficit  1.35, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.71, deficit  2.29, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -7.19, deficit  1.67, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CCACGUG (   1) MLPS  -8.31 deficit   2.18 prct   0.00 CutScore  77.06;  Ed  0, 0
ans =

    ' HL_53890.2  8S95 C   67 G   73'

 scores better against   3 groups: HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.81, deficit  0.21, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.89, deficit  1.10, prct   0.00; HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.14, deficit  3.04, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CACAUUG (   1) MLPS  -8.52 deficit   2.39 prct   0.00 CutScore  74.84;  Ed  0, 0
ans =

    ' HL_53890.2  8CRE C  108 G  114'

 scores better against   3 groups: HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 3, MLPS -7.56, deficit  0.00, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.89, deficit  1.10, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.92, deficit  1.99, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CACAUUG (   1) MLPS  -8.52 deficit   2.39 prct   0.00 CutScore  74.84;  Ed  0, 0
ans =

    ' HL_53890.2  8P9A C  108 G  114'

 scores better against   3 groups: HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 3, MLPS -7.56, deficit  0.00, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.89, deficit  1.10, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.92, deficit  1.99, prct   0.00; 
Better:  10 Equal:   0 Score 0.00               UGUAAG (   1) MLPS  -8.60 deficit   2.47 prct   0.00 CutScore  73.98;  Ed  0, 0
ans =

    ' HL_53890.2  4UYK U   98 G  103'

 scores better against  10 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.00, deficit  1.99, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.16, deficit  3.40, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -5.21, deficit  0.74, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -6.97, deficit  0.87, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.24, deficit  1.71, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              UGAAAAG (   1) MLPS  -8.61 deficit   2.48 prct   0.00 CutScore  73.92;  Ed  0, 0
ans =

    ' HL_53890.2  7A0S U  792 G  798'

 scores better against   4 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -6.44, deficit  1.10, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -6.77, deficit  1.10, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -8.32, deficit  2.23, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -8.35, deficit  2.75, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              CCAAGCG (   1) MLPS  -8.83 deficit   2.70 prct   0.00 CutScore  71.58;  Ed  0, 0
ans =

    ' HL_53890.2  6VMY C  287 G  293'

 scores better against   4 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.74, deficit  2.00, prct   0.00; HL_89893.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.14, deficit  3.50, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 2, MLPS -8.45, deficit  3.02, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.71, deficit  3.11, prct   0.00; 
Better:  15 Equal:   0 Score 0.00               CUUCGG (   1) MLPS  -9.59 deficit   3.46 prct   0.00 CutScore  63.59;  Ed  0, 0
ans =

    ' HL_53890.2  8P9A C  230 G  235'

 scores better against  15 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -1.94, deficit  0.00, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.48, deficit  0.00, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.49, deficit  0.82, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.92, deficit  2.12, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -6.12, deficit  0.20, prct   0.00; 
Better:  15 Equal:   0 Score 0.00               CUUCGG (   1) MLPS  -9.59 deficit   3.46 prct   0.00 CutScore  63.59;  Ed  0, 0
ans =

    ' HL_53890.2  1P6V C   26 G   31'

 scores better against  15 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -1.94, deficit  0.00, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.48, deficit  0.00, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.49, deficit  0.82, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.92, deficit  2.12, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -6.12, deficit  0.20, prct   0.00; 
Group 139 is from HL_57176.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_57176.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              GCUCGUC (   1) MLPS  -5.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_57176.2  4WF9 G 1361 C 1367'

 matches the original group, cWW-F-F-F
Better:   1 Equal:   0 Score 0.00              GGUCGUC (   1) MLPS  -5.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_57176.2  7A0S G 1337 C 1343'

 scores better against   1 groups: HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  4, 2, MLPS -5.20, deficit  1.85, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              GGUCGUC (   1) MLPS  -5.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_57176.2  9DFE G 1324 C 1330'

 scores better against   1 groups: HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  4, 2, MLPS -5.20, deficit  1.85, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              GCAAAUC (   1) MLPS  -5.84 deficit   0.24 prct   0.00 CutScore  97.51;  Ed  0, 0
ans =

    ' HL_57176.2  5J7L G 1492 C 1498'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00              GCAAAUC (   1) MLPS  -5.84 deficit   0.24 prct   0.00 CutScore  97.51;  Ed  0, 0
ans =

    ' HL_57176.2  9DFE G 1492 C 1498'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               GACGAC (   1) MLPS  -5.97 deficit   0.37 prct   0.00 CutScore  96.11;  Ed  0, 0
ans =

    ' HL_57176.2  5VJ9 G    6 C   11'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               GACGAC (   1) MLPS  -5.97 deficit   0.37 prct   0.00 CutScore  96.11;  Ed  0, 0
ans =

    ' HL_57176.2  5NDI G    8 C   13'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               GACGAC (   1) MLPS  -5.97 deficit   0.37 prct   0.00 CutScore  96.11;  Ed  0, 0
ans =

    ' HL_57176.2  5NDH G    6 C   11'

 matches the original group, cWW-F-F-F
Better:   3 Equal:   0 Score 0.00               CAAGAG (   1) MLPS  -6.20 deficit   0.60 prct   0.00 CutScore  93.64;  Ed  0, 0
ans =

    ' HL_57176.2  9DFE C 1631 G 1635'

 scores better against   3 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -4.78, deficit  0.58, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -6.01, deficit  0.26, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -6.10, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              AGCAGUU (   1) MLPS  -6.24 deficit   0.64 prct   0.00 CutScore  93.23;  Ed  0, 0
ans =

    ' HL_57176.2  8P9A A 1506 U 1512'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00              AGCAGUU (   1) MLPS  -6.24 deficit   0.64 prct   0.00 CutScore  93.23;  Ed  0, 0
ans =

    ' HL_57176.2  8CRE A 1502 U 1508'

 matches the original group, cWW-F-F-F
Better:   4 Equal:   0 Score 0.00              GUUAAUC (   1) MLPS  -7.10 deficit   1.50 prct   0.00 CutScore  84.19;  Ed  0, 0
ans =

    ' HL_57176.2  5J7L G 1324 C 1330'

 scores better against   4 groups: HL_77436.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -4.83, deficit -1.41, prct   0.00; HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  1, 1, MLPS -6.04, deficit  1.61, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -6.42, deficit  0.95, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.75, deficit -1.65, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              GCUGAUC (   1) MLPS  -7.61 deficit   2.01 prct   0.00 CutScore  78.81;  Ed  0, 0
ans =

    ' HL_57176.2  4V9F G 1430 C 1436'

 scores better against   1 groups: HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -6.64, deficit  1.05, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UCAAUG (   1) MLPS  -7.81 deficit   2.21 prct   0.00 CutScore  76.74;  Ed  0, 0
ans =

    ' HL_57176.2  7A0S U 1647 G 1652'

 scores better against   1 groups: HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -7.46, deficit  1.33, prct   0.00; 
Group 156 is from HL_65313.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_65313.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               CCUUUG (   1) MLPS  -4.39 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_65313.1  8CRE C  762 G  767'

 matches the original group, cWW-F-F-F
Group 194 is from HL_80362.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80362.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            CCUCACACG (   1) MLPS  -7.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80362.1  1GAX C  930 G  938'

 matches the original group, cWW-F-F-F
Group 197 is from HL_80709.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80709.3
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CGCAG (   1) MLPS  -3.18 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80709.3  4V9F C 1808 G 1812'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CGCAG (   1) MLPS  -3.18 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80709.3  9DFE C 1752 G 1756'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CGCAG (   1) MLPS  -3.18 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80709.3  7A0S C 1743 G 1747'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CGCAG (   1) MLPS  -3.18 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80709.3  4WF9 C 1779 G 1783'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CGAAG (   1) MLPS  -3.55 deficit   0.37 prct   0.00 CutScore  96.13;  Ed  0, 0
ans =

    ' HL_80709.3  5J7L C 1752 G 1756'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CGAAG (   1) MLPS  -3.55 deficit   0.37 prct   0.00 CutScore  96.13;  Ed  0, 0
ans =

    ' HL_80709.3  3IVK C   40 G   44'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00                CGAAG (   1) MLPS  -3.55 deficit   0.37 prct   0.00 CutScore  96.13;  Ed  0, 0
ans =

    ' HL_80709.3  3HHN C   40 G   44'

 matches the original group, cWW-F-F-F
Better:   5 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -5.85 deficit   2.67 prct   0.00 CutScore  71.89;  Ed  0, 0
ans =

    ' HL_80709.3  4ZNP G   26 C   31'

 scores better against   5 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.33, deficit  0.00, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.48, deficit -0.62, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.82, deficit  0.07, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               CUCUUG (   1) MLPS  -6.13 deficit   2.95 prct   0.00 CutScore  68.98;  Ed  0, 0
ans =

    ' HL_80709.3  5XH7 C  -11 G   -6'

 scores better against   2 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.36, deficit  0.05, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.08, deficit  3.62, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               CUCUUG (   1) MLPS  -6.13 deficit   2.95 prct   0.00 CutScore  68.98;  Ed  0, 0
ans =

    ' HL_80709.3  5KK5 C  -11 G   -6'

 scores better against   2 groups: HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.36, deficit  0.05, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.08, deficit  3.62, prct   0.00; 
Better:  12 Equal:   0 Score 0.00               CUGUUG (   1) MLPS  -7.59 deficit   4.41 prct   0.00 CutScore  53.55;  Ed  0, 0
ans =

    ' HL_80709.3  5MGA C  -11 G   -6'

 scores better against  12 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -5.16, deficit  0.28, prct   0.00; HL_86870.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -5.36, deficit  0.05, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.85, deficit  0.73, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 3, MLPS -5.87, deficit -0.05, prct   0.00; 
Group 204 is from HL_82710.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_82710.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -4.33 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_82710.2  5J7L G  123 C  128'

 scores better against   2 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -4.33 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_82710.2  7A0S G  121 C  126'

 scores better against   2 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GGGAAC (   1) MLPS  -4.84 deficit   0.51 prct   0.00 CutScore  94.62;  Ed  0, 0
ans =

    ' HL_82710.2  9DFE G  123 C  128'

 scores better against   1 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.77, deficit  0.97, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GAACUC (   1) MLPS  -6.87 deficit   2.54 prct   0.00 CutScore  73.24;  Ed  0, 0
ans =

    ' HL_82710.2  1U63 G   20 C   25'

 scores better against   2 groups: HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.60, deficit  1.18, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -5.68, deficit  3.22, prct   0.00; 
Group 216 is from HL_86870.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_86870.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00               GUGUUC (   1) MLPS  -5.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86870.2  8CRE G  759 C  764'

 scores better against   3 groups: HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.07, deficit  1.61, prct   0.00; HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.01, deficit  2.64, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -5.07, deficit  0.19, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GUCUUC (   1) MLPS  -5.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86870.2  8P9A G  763 C  768'

 scores better against   1 groups: HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.07, deficit  1.61, prct   0.00; 
Better:   8 Equal:   0 Score 0.00                CAAUG (   1) MLPS  -6.56 deficit   1.26 prct   0.00 CutScore  86.76;  Ed  0, 0
ans =

    ' HL_86870.2  9C75 C   20 G   24'

 scores better against   8 groups: HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -2.86, deficit  0.00, prct   0.00; HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.18, deficit  1.61, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  1, 0, MLPS -4.82, deficit  0.28, prct   0.00; HL_38168.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.99, deficit  0.00, prct   0.00; HL_48778.2,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -5.36, deficit  2.16, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             ACGCGUGU (   1) MLPS -11.32 deficit   6.01 prct   0.00 CutScore  36.68;  Ed  0, 0
ans =

    ' HL_86870.2  2Y9H A   10 U   17'

 scores better against   1 groups: HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -10.90, deficit  2.17, prct   0.00; 
Group 217 is from HL_86883.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_86883.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               GUAUUC (   1) MLPS  -2.46 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86883.1  8P9A G  124 C  129'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               GUAUUC (   1) MLPS  -2.46 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86883.1  8CRE G  124 C  129'

 matches the original group, cWW-F-F-F
Group 224 is from HL_89199.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_89199.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               CUGAUG (   1) MLPS  -2.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89199.2  2QUW C   32 G   37'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               CUGAUG (   1) MLPS  -2.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89199.2  2QUS C   32 G   37'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               CUGAUG (   1) MLPS  -2.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89199.2  5DH6 C   16 G   21'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               CUGAUG (   1) MLPS  -2.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89199.2  2OEU C   15 G   20'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00               CUGAUG (   1) MLPS  -2.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89199.2  8SYK C   22 G   27'

 matches the original group, cWW-F-F-F
Group 226 is from HL_89567.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_89567.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CGACACAG (   1) MLPS  -3.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89567.2  5J7L C 1612 G 1619'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGACACAG (   1) MLPS  -3.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89567.2  4WF9 C 1656 G 1663'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGACACAG (   1) MLPS  -3.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89567.2  7A0S C 1628 G 1635'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGACACAG (   1) MLPS  -3.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89567.2  9DFE C 1612 G 1619'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGACACAG (   1) MLPS  -3.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89567.2  4V9F C 1687 G 1694'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGCAGCAG (   1) MLPS  -5.61 deficit   1.69 prct   0.00 CutScore  86.52;  Ed  0, 0
ans =

    ' HL_89567.2  8P9A C 1844 G 1851'

 matches the original group, cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CGCAGCAG (   1) MLPS  -5.61 deficit   1.69 prct   0.00 CutScore  86.52;  Ed  0, 0
ans =

    ' HL_89567.2  8CRE C 1840 G 1847'

 matches the original group, cWW-F-F-F
Better:   2 Equal:   0 Score 0.00             AGGCAAUU (   1) MLPS  -8.99 deficit   5.07 prct   0.00 CutScore  59.61;  Ed  0, 0
ans =

    ' HL_89567.2  1S03 A   22 U   29'

 scores better against   2 groups: HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -5.35, deficit  0.00, prct   0.00; HL_10540.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.93, deficit  0.73, prct   0.00; 
Group   2 is from HL_00914.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_00914.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GGUCAAAC (   1) MLPS  -5.49 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_00914.1  8CRE G 2514 C 2521'

 matches the original group, cWW-F-F-F-F
Group   8 is from HL_02817.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_02817.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CCAAAUAG (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_02817.2  8SYK C   32 G   39'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CCAAAUAG (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_02817.2  2OEU C   25 G   32'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GAAUUAAC (   1) MLPS  -7.04 deficit   2.25 prct   0.00 CutScore  81.20;  Ed  0, 0
ans =

    ' HL_02817.2  5BTP G   28 C   35'

 matches the original group, cWW-F-F-F-F
Group  27 is from HL_09260.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_09260.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00          CAGCCUGGGAG (   1) MLPS -10.24 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_09260.2  5WT1 C   13 G   22'

 scores better against   3 groups: HL_93616.2,  8 NTs, cWW-cWS-F-F-F-F                         , Ed  1, 1, MLPS -5.09, deficit -0.79, prct   0.00; HL_80411.1,  9 NTs, cWW-F-cSH-F-F-F-F                       , Ed  2, 2, MLPS -9.62, deficit  1.35, prct   0.00; HL_49941.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -9.67, deficit  1.60, prct   0.00; 
Better:   0 Equal:   0 Score 1.00         UAGCCUGGUUAG (   1) MLPS -10.28 deficit   0.04 prct   0.00 CutScore  99.74;  Ed  0, 0
ans =

    ' HL_09260.2  7VNV U   13 G   22'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00         UAGCCAGGUCAG (   1) MLPS -11.78 deficit   1.54 prct   0.00 CutScore  90.75;  Ed  0, 0
ans =

    ' HL_09260.2  3AMU U   13 G   22'

 matches the original group, cWW-F-F-F-F
Group  36 is from HL_13529.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_13529.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              UUAACUG (   1) MLPS  -6.44 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_13529.1  5J7L U  641 G  647'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAAAAAAGC (   1) MLPS  -6.60 deficit   0.16 prct   0.00 CutScore  98.62;  Ed  0, 0
ans =

    ' HL_13529.1  5U3G G   68 C   76'

 matches the original group, cWW-F-F-F-F
Group  50 is from HL_20535.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_20535.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   6 Equal:   0 Score 0.00            GUUCGACUC (   1) MLPS -10.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20535.2  6GSK G   53 C   61'

 scores better against   6 groups: HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  0, 0, MLPS -4.00, deficit  1.64, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  2, 2, MLPS -8.07, deficit  4.98, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.90, deficit  1.90, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -9.15, deficit  3.72, prct   0.00; HL_38808.1,  4 NTs, cWW-cWW                                 , Ed  5, 3, MLPS -9.84, deficit  0.92, prct   0.00; 
Better:   9 Equal:   0 Score 0.00             GAUAAUAC (   1) MLPS -10.58 deficit   0.18 prct   0.00 CutScore  98.13;  Ed  0, 0
ans =

    ' HL_20535.2  5VOE G   15 C   22'

 scores better against   9 groups: HL_84299.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -6.09, deficit  0.80, prct   0.00; HL_02817.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.30, deficit  2.51, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  2, 1, MLPS -7.64, deficit  1.85, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.53, deficit  3.40, prct   0.00; HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 2, MLPS -9.27, deficit  3.70, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            UCCUUGUGG (   1) MLPS -11.15 deficit   0.74 prct   0.00 CutScore  92.17;  Ed  0, 0
ans =

    ' HL_20535.2  8P9A U  715 G  723'

 matches the original group, cWW-F-F-F-F
Group  64 is from HL_25061.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_25061.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            UGUGAGAGG (   1) MLPS  -8.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_25061.1  6MWN U  624 G  632'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CUGUUUUGACG (   1) MLPS -10.85 deficit   2.12 prct   0.00 CutScore  83.81;  Ed  0, 0
ans =

    ' HL_25061.1  8CRE C 1343 G 1353'

 matches the original group, cWW-F-F-F-F
Group  73 is from HL_28791.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_28791.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               CGCGUG (   1) MLPS  -3.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28791.1  2Y9H C   11 G   16'

 matches the original group, cWW-F-F-F-F
Group  78 is from HL_30068.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_30068.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             UAAGCAUA (   1) MLPS  -6.05 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_30068.2  8P9A U   38 A   45'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00             UAAGCAUA (   1) MLPS  -6.05 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_30068.2  8CRE U   37 A   44'

 matches the original group, cWW-F-F-F-F
Better:   1 Equal:   0 Score 0.00              UUGUUCA (   1) MLPS  -6.26 deficit   0.21 prct   0.00 CutScore  97.82;  Ed  0, 0
ans =

    ' HL_30068.2  8CRE U 2892 A 2898'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.56, deficit  0.17, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              UUGUUCA (   1) MLPS  -6.26 deficit   0.21 prct   0.00 CutScore  97.82;  Ed  0, 0
ans =

    ' HL_30068.2  8P9A U 2920 A 2926'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.56, deficit  0.17, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CUGUUCG (   1) MLPS  -6.26 deficit   0.21 prct   0.00 CutScore  97.77;  Ed  0, 0
ans =

    ' HL_30068.2  4WF9 C 2578 G 2584'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.39, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CUGUUCG (   1) MLPS  -6.26 deficit   0.21 prct   0.00 CutScore  97.77;  Ed  0, 0
ans =

    ' HL_30068.2  5J7L C 2551 G 2557'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.39, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CUGUUCG (   1) MLPS  -6.26 deficit   0.21 prct   0.00 CutScore  97.77;  Ed  0, 0
ans =

    ' HL_30068.2  9DFE C 2551 G 2557'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.39, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CUGUUCG (   1) MLPS  -6.26 deficit   0.21 prct   0.00 CutScore  97.77;  Ed  0, 0
ans =

    ' HL_30068.2  7A0S C 2530 G 2536'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.39, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GAAACAUC (   1) MLPS  -6.36 deficit   0.30 prct   0.00 CutScore  96.80;  Ed  0, 0
ans =

    ' HL_30068.2  4WF9 G  197 C  204'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.55, deficit  2.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GAAACAUC (   1) MLPS  -6.36 deficit   0.30 prct   0.00 CutScore  96.80;  Ed  0, 0
ans =

    ' HL_30068.2  5J7L G  194 C  201'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.55, deficit  2.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GAAACAUC (   1) MLPS  -6.36 deficit   0.30 prct   0.00 CutScore  96.80;  Ed  0, 0
ans =

    ' HL_30068.2  4V9F G  164 C  171'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.55, deficit  2.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GAAACAUC (   1) MLPS  -6.36 deficit   0.30 prct   0.00 CutScore  96.80;  Ed  0, 0
ans =

    ' HL_30068.2  7A0S G  171 C  178'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.55, deficit  2.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GAAACAUC (   1) MLPS  -6.36 deficit   0.30 prct   0.00 CutScore  96.80;  Ed  0, 0
ans =

    ' HL_30068.2  9DFE G  194 C  201'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.55, deficit  2.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              UUGUUCG (   1) MLPS  -7.57 deficit   1.52 prct   0.00 CutScore  84.00;  Ed  0, 0
ans =

    ' HL_30068.2  4V9F U 2586 G 2592'

 scores better against   1 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -6.58, deficit  2.19, prct   0.00; 
Better:  13 Equal:   0 Score 0.00              GGAAUAC (   1) MLPS  -8.95 deficit   2.90 prct   0.00 CutScore  69.45;  Ed  0, 0
ans =

    ' HL_30068.2  3DIL G  124 C  130'

 scores better against  13 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.51, deficit  0.76, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -6.62, deficit  4.86, prct   0.00; HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.27, deficit  2.27, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.32, deficit  2.20, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -7.37, deficit  1.93, prct   0.00; 
Group  96 is from HL_37824.7 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_37824.7
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5UZ6 C   15 G   20'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8HZE C   19 G   24'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8JOZ C  47B G  47G'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5TPY C   62 G   67'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8D28 C   13 G   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  1G1X C  590 G  649'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5D5L C    8 G   13'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8ITS C   31 G   36'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4JF2 C    8 G   13'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5VCI C   16 G   21'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6TFF C   27 G   32'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  1RLG C    9 G   14'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4PLX C   24 G   29'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9L6X C   16 G   21'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7D7W C   27 G   32'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  1HMH C  104 G  114'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  1KH6 C   28 G   33'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7OZQ C   14 G   19'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3MXH C   31 G   36'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6N2V C   56 G   61'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9DID C   61 G   66'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7WIE C   31 G   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C 1165 G 1171'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  2OIU C   10 G   15'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5Y7M C   24 G   29'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5B2P C   35 G   40'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4LCK C   71 G   76'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8HZL C   49 G   54'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8Z8U C   19 G   24'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4RUM C   51 G   56'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9DID C   61 G   66'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7K16 C   13 G   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8ITS C   15 G   20'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4FRG C   46 G   51'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6JQ5 C   45 G   50'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7UZ0 C   36 G   41'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9FN3 C   42 G   47'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6N2V C   76 G   81'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  1HMH C  104 G  114'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3NMU C   18 G   23'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4Y1M C   24 G   29'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3LQX C  153 G  158'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5M0I C   12 G   17'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C  804 G  809'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5TPY C   13 G   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4BW0 C    9 G   14'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3IWN C   21 G   26'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3NVI C    9 G   14'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6UFG C  105 G  110'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  2IL9 C 6119 G6119E'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3CUL C    7 G   12'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8SYK C   79 G   84'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9FN3 C   42 G   47'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3SUX C   65 G   70'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7ELQ C   22 G   27'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5M0I C   12 G   17'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4W90 C   82 G   87'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3D0U C  142 G  147'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6UFH C  145 G  150'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5M0J C   12 G   17'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7U4A C   62 G   67'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 2374 G 2379'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6M0X C   32 G   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 2411 G 2416'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6JQ5 C   45 G   50'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3P22 C   17 G   22'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8Z8U C   19 G   24'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  2OIU C   59 G   64'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C 2374 G 2379'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8VU0 C   33 G   38'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3E5C C   41 G   46'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5M0J C   12 G   17'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6CU1 C   42 G   47'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C 2401 G 2406'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C  640 G  645'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5U3G C   47 G   52'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C  674 G  679'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C  937 G  942'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6CB3 C   76 G   81'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE C  922 G  927'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6SVS C   26 G   31'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4PQV C   13 G   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6UFH C  106 G  111'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3NKB C   49 G   54'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7JNH C   43 G   48'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6MJ0 C   49 G   54'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9L6Y C   13 G   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  6UFG C  144 G  149'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4QLM C   54 G   59'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  3AGV C   11 G   16'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  4KQY C   60 G   65'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  1G1X C  590 G  649'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 1363 G 1368'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C 1363 G 1368'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAAG (   1) MLPS  -1.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37824.7  7U4A C   13 G   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  2R8S G  149 C  154'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  4AOB G   73 C   78'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6DVK G   45 C   50'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  3IGI G  274 C  279'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  1U6B G   23 C   28'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5FJC G   73 C   78'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  3RW6 G   27 C   32'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  3MOJ G 2529 C 2534'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6JOO G   32 C   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  9DXL G    7 C   12'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G  844 C  849'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5DCV G   26 C   31'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6UFH G   45 C   50'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5XTM G   24 C   29'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5XTM G   24 C   29'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F G  690 C  695'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  1L9A G  197 C  202'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5DDP G   11 C   16'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  3V7E G  105 C  110'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  3E5C G   18 C   23'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  7UQ6 G   41 C   46'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6N2V G   24 C   29'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L G  629 C  634'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6U8D G  180 C  219'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  1UN6 G   82 C   94'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE G  840 C  845'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  7ENI G   34 C   39'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L G  158 C  163'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  7MKY G   40 C   45'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE G  629 C  634'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5DDO G   11 C   16'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  1MFQ G  197 C  202'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6CB3 G   20 C   25'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S G 2353 C 2358'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6CB3 G   50 C   55'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F G 1628 C 1633'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  5DDO G   11 C   16'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6YMC G   11 C   16'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  7MRL G   34 C   39'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB G  158 C  163'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  6JDV G   48 C   53'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAAAC (   1) MLPS  -2.54 deficit   0.79 prct   0.00 CutScore  91.81;  Ed  0, 0
ans =

    ' HL_37824.7  1M5K G   74 C   79'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C 2658 G 2663'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 2658 G 2663'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE C 2997 G 3002'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 2695 G 2700'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C 2637 G 2642'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  3AM1 C   45 G   50'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C 3025 G 3030'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  4NLF C 2658 G 2663'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C 2685 G 2690'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE C 1488 G 1493'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  6DME C   25 G   30'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  4OQU C   76 G   81'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  3NPQ C   20 G   25'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C 1501 G 1506'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  4LVW C   58 G   63'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAGAG (   1) MLPS  -3.13 deficit   1.37 prct   0.00 CutScore  85.67;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 1326 G 1331'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  5FJC A   49 U   54'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  5VW1 A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  5B2T A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  7ZO1 A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A A 1084 U 1089'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  7QQP A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  1NBS A  204 U  209'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE A 1069 U 1074'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE A 2198 U 2203'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  7QR0 A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  4Y1M A   81 U   86'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  5FQ5 A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A A 2220 U 2225'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  7QQX A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGAAAU (   1) MLPS  -3.27 deficit   1.51 prct   0.00 CutScore  84.30;  Ed  0, 0
ans =

    ' HL_37824.7  7QR8 A   32 U   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A U  382 A  387'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  5X2G U   32 A   37'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  8X5V U   33 A   38'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  4ENC U   28 A   33'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE U  382 A  387'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  4Y1M U   55 A   60'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  7ZO1 U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  5B2T U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  7QQX U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  7QQP U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  5F9R U   90 A   95'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  8KAJ U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  6JDV U   86 A   91'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  7QR0 U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  5VW1 U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  5FQ5 U   72 A   77'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAA (   1) MLPS  -3.30 deficit   1.54 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' HL_37824.7  6LAX U   42 A   47'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  4K50 U  587 G  592'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  4K27 U   26 G   31'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  1KXK U   33 G   38'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  4PCJ U   16 G   21'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  5M0H U   21 G   26'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  6WPI U   25 G   30'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  5BTM U   26 G   31'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  8XPP U  588 G  593'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE U 2716 G 2721'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  6AZ4 U   20 G   25'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A U  707 G  712'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE U  705 G  710'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A U 2744 G 2749'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAAAG (   1) MLPS  -3.43 deficit   1.67 prct   0.00 CutScore  82.57;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB U 1012 G 1017'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  4R4V C  735 G  740'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 1806 G 1811'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  359D C  154 G  164'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C  599 G  604'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  4QK9 C   56 G   61'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C 1403 G 1408'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUAAG (   1) MLPS  -3.49 deficit   1.73 prct   0.00 CutScore  81.96;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C 1260 G 1265'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  1MZP C   25 G   30'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE C 1106 G 1111'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  379 G  384'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  186 G  191'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  7R97 C   11 G   16'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C  732 G  737'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C 1121 G 1126'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C  379 G  384'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C  897 G  902'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  897 G  902'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 1862 G 1867'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  3W3S C  47F G  47K'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C  146 G  151'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  2BTE C   46 G  47D'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCAAG (   1) MLPS  -3.56 deficit   1.80 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C 1868 G 1873'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAGAC (   1) MLPS  -3.92 deficit   2.16 prct   0.00 CutScore  77.49;  Ed  0, 0
ans =

    ' HL_37824.7  4OQU G   57 C   62'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAGAC (   1) MLPS  -3.92 deficit   2.16 prct   0.00 CutScore  77.49;  Ed  0, 0
ans =

    ' HL_37824.7  8OI5 G   88 C   93'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGAGAC (   1) MLPS  -3.92 deficit   2.16 prct   0.00 CutScore  77.49;  Ed  0, 0
ans =

    ' HL_37824.7  4OQU G   13 C   18'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGAAG (   1) MLPS  -4.19 deficit   2.44 prct   0.00 CutScore  74.62;  Ed  0, 0
ans =

    ' HL_37824.7  3NDB C  208 G  213'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGAAG (   1) MLPS  -4.19 deficit   2.44 prct   0.00 CutScore  74.62;  Ed  0, 0
ans =

    ' HL_37824.7  3KTW C  209 G  214'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGAAG (   1) MLPS  -4.19 deficit   2.44 prct   0.00 CutScore  74.62;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C  533 G  538'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGAAG (   1) MLPS  -4.19 deficit   2.44 prct   0.00 CutScore  74.62;  Ed  0, 0
ans =

    ' HL_37824.7  4C7O C   19 G   24'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGAAG (   1) MLPS  -4.19 deficit   2.44 prct   0.00 CutScore  74.62;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C 1515 G 1520'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGAAG (   1) MLPS  -4.19 deficit   2.44 prct   0.00 CutScore  74.62;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C 1235 G 1240'

 matches the original group, cWW-F-F-F-F
Better:   1 Equal:   0 Score 0.00               GGUAAC (   1) MLPS  -4.28 deficit   2.52 prct   0.00 CutScore  73.77;  Ed  0, 0
ans =

    ' HL_37824.7  1U9S G   99 C  104'

 scores better against   1 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -3.80, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GGUAAC (   1) MLPS  -4.28 deficit   2.52 prct   0.00 CutScore  73.77;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F G 2876 C 2881'

 scores better against   1 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -3.80, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GGUAAC (   1) MLPS  -4.28 deficit   2.52 prct   0.00 CutScore  73.77;  Ed  0, 0
ans =

    ' HL_37824.7  4WFL G   81 C   86'

 scores better against   1 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -3.80, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GGUAAC (   1) MLPS  -4.28 deficit   2.52 prct   0.00 CutScore  73.77;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G 1634 C 1639'

 scores better against   1 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -3.80, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               GGCAAC (   1) MLPS  -4.35 deficit   2.59 prct   0.00 CutScore  73.03;  Ed  0, 0
ans =

    ' HL_37824.7  1U9S G  204 C  209'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGCAAC (   1) MLPS  -4.35 deficit   2.59 prct   0.00 CutScore  73.03;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB G 1265 C 1270'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGCAAC (   1) MLPS  -4.35 deficit   2.59 prct   0.00 CutScore  73.03;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE G 1630 C 1635'

 matches the original group, cWW-F-F-F-F
Better:   1 Equal:   0 Score 0.00               UGAGAA (   1) MLPS  -4.67 deficit   2.91 prct   0.00 CutScore  69.63;  Ed  0, 0
ans =

    ' HL_37824.7  1Q96 U   13 A   18'

 scores better against   1 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.40, deficit  0.20, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               UGAGAG (   1) MLPS  -4.81 deficit   3.05 prct   0.00 CutScore  68.24;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L U  296 G  301'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAGAG (   1) MLPS  -4.81 deficit   3.05 prct   0.00 CutScore  68.24;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB U  296 G  301'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C  462 G  467'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  462 G  467'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C  508 G  513'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE C 2935 G 2940'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C 2594 G 2599'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C 2963 G 2968'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C  473 G  478'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 2629 G 2634'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C 2573 G 2578'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 2594 G 2599'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C 1076 G 1081'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUGAG (   1) MLPS  -4.86 deficit   3.10 prct   0.00 CutScore  67.64;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C 2621 G 2626'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAGG (   1) MLPS  -4.90 deficit   3.15 prct   0.00 CutScore  67.21;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  726 G  731'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAGG (   1) MLPS  -4.90 deficit   3.15 prct   0.00 CutScore  67.21;  Ed  0, 0
ans =

    ' HL_37824.7  1G1X C  726 G  731'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAGG (   1) MLPS  -4.90 deficit   3.15 prct   0.00 CutScore  67.21;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C  726 G  731'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGAAGG (   1) MLPS  -4.90 deficit   3.15 prct   0.00 CutScore  67.21;  Ed  0, 0
ans =

    ' HL_37824.7  1G1X C  726 G  731'

 matches the original group, cWW-F-F-F-F
Better:   1 Equal:   0 Score 0.00               CGCGAG (   1) MLPS  -4.94 deficit   3.18 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C   89 G   94'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGCGAG (   1) MLPS  -4.94 deficit   3.18 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 2856 G 2861'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGCGAG (   1) MLPS  -4.94 deficit   3.18 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C 1222 G 1227'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGCGAG (   1) MLPS  -4.94 deficit   3.18 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_37824.7  4YAZ C   25 G   30'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGCGAG (   1) MLPS  -4.94 deficit   3.18 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C  576 G  581'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGCGAG (   1) MLPS  -4.94 deficit   3.18 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C 1265 G 1270'

 scores better against   1 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGGAAC (   1) MLPS  -4.98 deficit   3.22 prct   0.00 CutScore  66.43;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L G 1515 C 1520'

 scores better against   2 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.77, deficit  0.97, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.84, deficit  0.51, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               UGUAAA (   1) MLPS  -5.03 deficit   3.27 prct   0.00 CutScore  65.92;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE U 1399 A 1404'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               AGCAAU (   1) MLPS  -5.07 deficit   3.31 prct   0.00 CutScore  65.51;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S A 2831 U 2836'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CUAACG (   1) MLPS  -5.19 deficit   3.43 prct   0.00 CutScore  64.28;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C  862 G  867'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CUAACG (   1) MLPS  -5.19 deficit   3.43 prct   0.00 CutScore  64.28;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  862 G  867'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGCAAG (   1) MLPS  -5.23 deficit   3.47 prct   0.00 CutScore  63.79;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S U 1856 G 1861'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGCAAG (   1) MLPS  -5.23 deficit   3.47 prct   0.00 CutScore  63.79;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE U 1864 G 1878'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CAAACG (   1) MLPS  -5.28 deficit   3.52 prct   0.00 CutScore  63.27;  Ed  0, 0
ans =

    ' HL_37824.7  1U6B C  153 G  158'

 matches the original group, cWW-F-F-F-F
Better:   3 Equal:   0 Score 0.00               CGACAG (   1) MLPS  -5.56 deficit   3.80 prct   0.00 CutScore  60.37;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 C 1400 G 1405'

 scores better against   3 groups: HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.05, deficit  0.57, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.38, deficit  1.05, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 2, MLPS -5.46, deficit  0.02, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               CGGGAG (   1) MLPS  -5.57 deficit   3.81 prct   0.00 CutScore  60.29;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 2248 G 2253'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGGAG (   1) MLPS  -5.57 deficit   3.81 prct   0.00 CutScore  60.29;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C  487 G  493'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGGGAG (   1) MLPS  -5.57 deficit   3.81 prct   0.00 CutScore  60.29;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C  498 G  503'

 matches the original group, cWW-F-F-F-F
Better:   2 Equal:   0 Score 0.00               GGUGAC (   1) MLPS  -5.65 deficit   3.89 prct   0.00 CutScore  59.45;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G   88 C   93'

 scores better against   2 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -4.90, deficit  1.10, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.16, deficit  0.96, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGUGAC (   1) MLPS  -5.65 deficit   3.89 prct   0.00 CutScore  59.45;  Ed  0, 0
ans =

    ' HL_37824.7  2NZ4 G  108 C  113'

 scores better against   2 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -4.90, deficit  1.10, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.16, deficit  0.96, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGUGAC (   1) MLPS  -5.65 deficit   3.89 prct   0.00 CutScore  59.45;  Ed  0, 0
ans =

    ' HL_37824.7  7KKV G  500 C  505'

 scores better against   2 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -4.90, deficit  1.10, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.16, deficit  0.96, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGUGAC (   1) MLPS  -5.65 deficit   3.89 prct   0.00 CutScore  59.45;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 G 2876 C 2881'

 scores better against   2 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -4.90, deficit  1.10, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.16, deficit  0.96, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               CCAAAG (   1) MLPS  -5.66 deficit   3.90 prct   0.00 CutScore  59.31;  Ed  0, 0
ans =

    ' HL_37824.7  3PDR C   68 G   73'

 matches the original group, cWW-F-F-F-F
Better:   2 Equal:   0 Score 0.00               GGCGAC (   1) MLPS  -5.72 deficit   3.96 prct   0.00 CutScore  58.70;  Ed  0, 0
ans =

    ' HL_37824.7  3IGI G   89 C   94'

 scores better against   2 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.97, deficit  1.17, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.67, deficit  1.20, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGCGAC (   1) MLPS  -5.72 deficit   3.96 prct   0.00 CutScore  58.70;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE G   86 C   91'

 scores better against   2 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.97, deficit  1.17, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.67, deficit  1.20, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GGCGAC (   1) MLPS  -5.72 deficit   3.96 prct   0.00 CutScore  58.70;  Ed  0, 0
ans =

    ' HL_37824.7  2Z75 G  113 C  118'

 scores better against   2 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.97, deficit  1.17, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.67, deficit  1.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CGAAAUG (   1) MLPS  -5.98 deficit   4.22 prct   0.00 CutScore  56.03;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A C 1023 G 1029'

 scores better against   1 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 0, MLPS -5.67, deficit  0.33, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CGAACAG (   1) MLPS  -6.00 deficit   4.24 prct   0.00 CutScore  55.81;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C  641 G  647'

 scores better against   1 groups: HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.78, deficit  1.86, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AGUGAU (   1) MLPS  -6.37 deficit   4.61 prct   0.00 CutScore  51.93;  Ed  0, 0
ans =

    ' HL_37824.7  5F9F A   10 U   15'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.09, deficit  2.29, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AGUGAU (   1) MLPS  -6.37 deficit   4.61 prct   0.00 CutScore  51.93;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A A  357 U  362'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.09, deficit  2.29, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AGUGAU (   1) MLPS  -6.37 deficit   4.61 prct   0.00 CutScore  51.93;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE A  357 U  362'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.09, deficit  2.29, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AGUGAU (   1) MLPS  -6.37 deficit   4.61 prct   0.00 CutScore  51.93;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE A 1281 U 1286'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.09, deficit  2.29, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AGUGAU (   1) MLPS  -6.37 deficit   4.61 prct   0.00 CutScore  51.93;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A A 1296 U 1301'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.09, deficit  2.29, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               UGUGAA (   1) MLPS  -6.40 deficit   4.64 prct   0.00 CutScore  51.59;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F U  468 A  473'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.07, deficit  2.28, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               UGUGAA (   1) MLPS  -6.40 deficit   4.64 prct   0.00 CutScore  51.59;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L U 1076 A 1081'

 scores better against   2 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -5.36, deficit  1.16, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.07, deficit  2.28, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               AGCGAU (   1) MLPS  -6.44 deficit   4.68 prct   0.00 CutScore  51.19;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L A 2856 U 2861'

 scores better against   2 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.99, deficit  1.19, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.87, deficit  1.40, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UGUGAG (   1) MLPS  -6.54 deficit   4.78 prct   0.00 CutScore  50.21;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L U 1222 G 1227'

 scores better against   1 groups: HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -6.31, deficit  1.84, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              GGAAUAC (   1) MLPS  -6.62 deficit   4.86 prct   0.00 CutScore  49.36;  Ed  0, 0
ans =

    ' HL_37824.7  3D0U G  121 C  127'

 scores better against   1 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.51, deficit  0.76, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               CGUAGG (   1) MLPS  -6.64 deficit   4.88 prct   0.00 CutScore  49.18;  Ed  0, 0
ans =

    ' HL_37824.7  2ZZM C   47 G  47E'

 scores better against   4 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -5.46, deficit  2.45, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -5.92, deficit  2.12, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.07, deficit  1.87, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -6.09, deficit  0.57, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               CGCAGG (   1) MLPS  -6.71 deficit   4.95 prct   0.00 CutScore  48.43;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C   88 G   93'

 scores better against   2 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.22, deficit  3.04, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              GGAAAUC (   1) MLPS  -6.76 deficit   5.00 prct   0.00 CutScore  47.84;  Ed  0, 0
ans =

    ' HL_37824.7  7KKV G  528 C  534'

 scores better against   2 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 0, MLPS -5.80, deficit  0.45, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.84, deficit  0.24, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               UUAACG (   1) MLPS  -6.86 deficit   5.10 prct   0.00 CutScore  46.85;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 U 1762 G 1767'

 matches the original group, cWW-F-F-F-F
Better:   1 Equal:   0 Score 0.00               CUCACG (   1) MLPS  -6.99 deficit   5.23 prct   0.00 CutScore  45.50;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C  252 G  257'

 scores better against   1 groups: HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -6.63, deficit  2.31, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              AGAAAGU (   1) MLPS  -7.17 deficit   5.41 prct   0.00 CutScore  43.56;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE A 2142 U 2148'

 scores better against   3 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -5.81, deficit  0.47, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.82, deficit  0.39, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  1, 0, MLPS -5.94, deficit  0.27, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              AGAAAGU (   1) MLPS  -7.17 deficit   5.41 prct   0.00 CutScore  43.56;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A A 2164 U 2170'

 scores better against   3 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -5.81, deficit  0.47, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.82, deficit  0.39, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  1, 0, MLPS -5.94, deficit  0.27, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               CGAACG (   1) MLPS  -7.27 deficit   5.51 prct   0.00 CutScore  42.53;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S C 1376 G 1381'

 scores better against   5 groups: HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.59, deficit -0.51, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.48, deficit  2.15, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.59, deficit  3.41, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -6.72, deficit  2.52, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -6.78, deficit  0.65, prct   0.00; 
Better:  12 Equal:   0 Score 0.00               AAAAAU (   1) MLPS  -7.30 deficit   5.55 prct   0.00 CutScore  42.19;  Ed  0, 0
ans =

    ' HL_37824.7  4AOB A   49 U   54'

 scores better against  12 groups: HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.02, deficit  0.82, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.39, deficit  1.06, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -5.49, deficit -0.61, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -5.96, deficit  1.90, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -6.05, deficit  1.52, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              UGAAUAG (   1) MLPS  -7.50 deficit   5.74 prct   0.00 CutScore  40.12;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 U  686 G  692'

 matches the original group, cWW-F-F-F-F
Better:   3 Equal:   0 Score 0.00              UGAACAA (   1) MLPS  -7.54 deficit   5.78 prct   0.00 CutScore  39.76;  Ed  0, 0
ans =

    ' HL_37824.7  6VMY U  223 A  229'

 scores better against   3 groups: HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.10, deficit  2.18, prct   0.00; HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -7.09, deficit  4.69, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -7.38, deficit  1.94, prct   0.00; 
Better:   6 Equal:   0 Score 0.00               UGCAUA (   1) MLPS  -7.55 deficit   5.79 prct   0.00 CutScore  39.67;  Ed  0, 0
ans =

    ' HL_37824.7  5VSU U   70 A   75'

 scores better against   6 groups: HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -4.69, deficit  1.51, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -4.97, deficit  1.18, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -5.92, deficit  2.12, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.68, deficit  0.55, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -7.01, deficit  2.68, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              CGUAUAG (   1) MLPS  -7.56 deficit   5.80 prct   0.00 CutScore  39.51;  Ed  0, 0
ans =

    ' HL_37824.7  2XLK C   10 G   16'

 scores better against   4 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -7.25, deficit  1.81, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.27, deficit  3.21, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.30, deficit  0.51, prct   0.00; HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  2, 2, MLPS -7.51, deficit  2.87, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              CGUAUAG (   1) MLPS  -7.56 deficit   5.80 prct   0.00 CutScore  39.51;  Ed  0, 0
ans =

    ' HL_37824.7  4AL5 C   10 G   16'

 scores better against   4 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -7.25, deficit  1.81, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.27, deficit  3.21, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.30, deficit  0.51, prct   0.00; HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  2, 2, MLPS -7.51, deficit  2.87, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              CGCAUAG (   1) MLPS  -7.63 deficit   5.87 prct   0.00 CutScore  38.77;  Ed  0, 0
ans =

    ' HL_37824.7  7WKP C   10 G   16'

 scores better against   2 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  0, 0, MLPS -6.15, deficit  0.72, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -6.79, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              UGAACAG (   1) MLPS  -7.67 deficit   5.91 prct   0.00 CutScore  38.38;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A U 1862 G 1868'

 matches the original group, cWW-F-F-F-F
Better:  15 Equal:   0 Score 0.00               CUGAAG (   1) MLPS  -7.68 deficit   5.92 prct   0.00 CutScore  38.25;  Ed  0, 0
ans =

    ' HL_37824.7  4QK9 C   14 G   19'

 scores better against  15 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  0, 0, MLPS -5.02, deficit  0.69, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -5.29, deficit  0.40, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -5.78, deficit  1.72, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -6.16, deficit  0.69, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              CGCACAG (   1) MLPS  -7.80 deficit   6.04 prct   0.00 CutScore  37.02;  Ed  0, 0
ans =

    ' HL_37824.7  5O6U C   32 G   38'

 scores better against   2 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -6.15, deficit  0.72, prct   0.00; HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.23, deficit  2.32, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              GGAGUAC (   1) MLPS  -7.99 deficit   6.23 prct   0.00 CutScore  35.04;  Ed  0, 0
ans =

    ' HL_37824.7  1XJR G   21 C   27'

 scores better against   4 groups: HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -6.17, deficit  1.17, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.51, deficit  0.76, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.98, deficit  2.92, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  2, 1, MLPS -7.97, deficit  0.41, prct   0.00; 
Better:   9 Equal:   0 Score 0.00               GGGAGC (   1) MLPS  -8.13 deficit   6.37 prct   0.00 CutScore  33.64;  Ed  0, 0
ans =

    ' HL_37824.7  1JID G  146 C  151'

 scores better against   9 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -6.26, deficit  3.24, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.62, deficit  2.42, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.66, deficit  0.56, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.79, deficit  2.46, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.91, deficit  1.48, prct   0.00; 
Better:   9 Equal:   0 Score 0.00               GGGAGC (   1) MLPS  -8.13 deficit   6.37 prct   0.00 CutScore  33.64;  Ed  0, 0
ans =

    ' HL_37824.7  1MFQ G  146 C  151'

 scores better against   9 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -6.26, deficit  3.24, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.62, deficit  2.42, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.66, deficit  0.56, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.79, deficit  2.46, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.91, deficit  1.48, prct   0.00; 
Better:   9 Equal:   0 Score 0.00               GGGAGC (   1) MLPS  -8.13 deficit   6.37 prct   0.00 CutScore  33.64;  Ed  0, 0
ans =

    ' HL_37824.7  1L9A G  146 C  151'

 scores better against   9 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 1, MLPS -6.26, deficit  3.24, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.62, deficit  2.42, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.66, deficit  0.56, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.79, deficit  2.46, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.91, deficit  1.48, prct   0.00; 
Better:   5 Equal:   0 Score 0.00              GGUAAGC (   1) MLPS  -8.18 deficit   6.42 prct   0.00 CutScore  33.04;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F G 1054 C 1060'

 scores better against   5 groups: HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -6.45, deficit  0.78, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -6.67, deficit  1.23, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.40, deficit  2.06, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -7.57, deficit  2.04, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 3, MLPS -7.71, deficit  0.15, prct   0.00; 
Better:   5 Equal:   0 Score 0.00              GGUAAGC (   1) MLPS  -8.18 deficit   6.42 prct   0.00 CutScore  33.04;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G 1126 C 1132'

 scores better against   5 groups: HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -6.45, deficit  0.78, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -6.67, deficit  1.23, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.40, deficit  2.06, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -7.57, deficit  2.04, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 3, MLPS -7.71, deficit  0.15, prct   0.00; 
Better:   5 Equal:   0 Score 0.00              GGUAAGC (   1) MLPS  -8.18 deficit   6.42 prct   0.00 CutScore  33.04;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE G 1122 C 1128'

 scores better against   5 groups: HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -6.45, deficit  0.78, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -6.67, deficit  1.23, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.40, deficit  2.06, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -7.57, deficit  2.04, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 3, MLPS -7.71, deficit  0.15, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               UUAGCG (   1) MLPS  -8.23 deficit   6.47 prct   0.00 CutScore  32.53;  Ed  0, 0
ans =

    ' HL_37824.7  3RG5 U  47C G  47H'

 scores better against   2 groups: HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  2, 2, MLPS -6.51, deficit  3.30, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.63, deficit  1.88, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              CGACGAG (   1) MLPS  -8.27 deficit   6.51 prct   0.00 CutScore  32.17;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C  458 G  474'

 scores better against   4 groups: HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  1, 1, MLPS -6.05, deficit  2.71, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -6.66, deficit  1.06, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  3, 3, MLPS -6.79, deficit  0.00, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.23, deficit  2.10, prct   0.00; 
Better:  17 Equal:   0 Score 0.00               GUGAAC (   1) MLPS  -8.47 deficit   6.71 prct   0.00 CutScore  30.06;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE G 1765 C 1770'

 scores better against  17 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.77, deficit  0.97, prct   0.00; HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.01, deficit  2.64, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 0, MLPS -5.14, deficit  0.81, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -5.20, deficit  0.31, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -5.89, deficit  1.83, prct   0.00; 
Better:  17 Equal:   0 Score 0.00               GUGAAC (   1) MLPS  -8.47 deficit   6.71 prct   0.00 CutScore  30.06;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G 1778 C 1783'

 scores better against  17 groups: HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.77, deficit  0.97, prct   0.00; HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.01, deficit  2.64, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 0, MLPS -5.14, deficit  0.81, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -5.20, deficit  0.31, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -5.89, deficit  1.83, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CGGAACG (   1) MLPS  -8.61 deficit   6.85 prct   0.00 CutScore  28.55;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F C 1793 G 1799'

 scores better against   3 groups: HL_89893.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.14, deficit  3.50, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -8.38, deficit  3.04, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.50, deficit  3.07, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               UUCAAG (   1) MLPS  -8.72 deficit   6.96 prct   0.00 CutScore  27.42;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F U  733 G  738'

 scores better against   5 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -5.85, deficit  2.83, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 1, MLPS -8.26, deficit  3.94, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.35, deficit  2.75, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.42, deficit  2.33, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -8.60, deficit  2.47, prct   0.00; 
Better:   9 Equal:   0 Score 0.00              UGAAGAA (   1) MLPS  -8.84 deficit   7.08 prct   0.00 CutScore  26.22;  Ed  0, 0
ans =

    ' HL_37824.7  5LM7 U   21 A   27'

 scores better against   9 groups: HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.56, deficit  0.97, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.43, deficit  0.64, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -7.54, deficit  1.79, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -7.83, deficit  2.40, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -8.04, deficit  0.48, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               UGGAGG (   1) MLPS  -9.01 deficit   7.25 prct   0.00 CutScore  24.40;  Ed  0, 0
ans =

    ' HL_37824.7  3KTW U  163 G  168'

 scores better against   5 groups: HL_55195.3,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -4.79, deficit  1.77, prct   0.00; HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  2, 2, MLPS -5.42, deficit  2.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -7.30, deficit  1.21, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -8.34, deficit  2.81, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.72, deficit  3.29, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              UGAUGAG (   1) MLPS  -9.15 deficit   7.39 prct   0.00 CutScore  22.96;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE U 1720 G 1742'

 matches the original group, cWW-F-F-F-F
Better:   6 Equal:   0 Score 0.00              UGCAUAA (   1) MLPS  -9.17 deficit   7.41 prct   0.00 CutScore  22.72;  Ed  0, 0
ans =

    ' HL_37824.7  6ASO U   70 A   76'

 scores better against   6 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 0, MLPS -6.28, deficit  0.84, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -6.92, deficit  0.13, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -8.05, deficit  2.30, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -8.55, deficit  0.99, prct   0.00; HL_86769.4,  7 NTs, cWW-cWW-cSH-F                           , Ed  4, 2, MLPS -8.89, deficit  0.87, prct   0.00; 
Better:  12 Equal:   0 Score 0.00              AGAGAAU (   1) MLPS  -9.67 deficit   7.91 prct   0.00 CutScore  17.56;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L A 1630 U 1636'

 scores better against  12 groups: HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.29, deficit  2.29, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -7.61, deficit  1.87, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 2, MLPS -7.98, deficit  0.42, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -8.54, deficit  2.45, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -8.63, deficit  3.03, prct   0.00; 
Better:   5 Equal:   0 Score 0.00              GUAACGC (   1) MLPS  -9.88 deficit   8.12 prct   0.00 CutScore  15.36;  Ed  0, 0
ans =

    ' HL_37824.7  1U9S G   84 C   90'

 scores better against   5 groups: HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -5.13, deficit  0.00, prct   0.00; HL_13529.1,  7 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.79, deficit  0.34, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 2, MLPS -8.41, deficit  2.74, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -8.53, deficit  3.09, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.06, deficit  0.33, prct   0.00; 
Better:   3 Equal:   0 Score 0.00               UGACGG (   1) MLPS -10.38 deficit   8.62 prct   0.00 CutScore  10.16;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L U 2356 G 2361'

 scores better against   3 groups: HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  2, 2, MLPS -5.42, deficit  2.20, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -6.97, deficit  2.50, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.30, deficit  1.21, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GAAGCU (   1) MLPS -10.42 deficit   8.66 prct   0.00 CutScore   9.73;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE G 1540 U 1545'

 scores better against   7 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -8.16, deficit  2.42, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -8.73, deficit  2.64, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -8.81, deficit  3.37, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -9.45, deficit  3.32, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -9.93, deficit  3.83, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               GAAGCU (   1) MLPS -10.42 deficit   8.66 prct   0.00 CutScore   9.73;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G 1544 U 1549'

 scores better against   7 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -8.16, deficit  2.42, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -8.73, deficit  2.64, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -8.81, deficit  3.37, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -9.45, deficit  3.32, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -9.93, deficit  3.83, prct   0.00; 
Better:   2 Equal:   0 Score 0.00             CGAUAACG (   1) MLPS -10.52 deficit   8.76 prct   0.00 CutScore   8.66;  Ed  0, 0
ans =

    ' HL_37824.7  9DFE C  955 G  962'

 scores better against   2 groups: HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -8.68, deficit  0.94, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -10.31, deficit  2.07, prct   0.00; 
Better:   4 Equal:   0 Score 0.00               UAAGGG (   1) MLPS -10.56 deficit   8.80 prct   0.00 CutScore   8.26;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE U  366 G  371'

 scores better against   4 groups: HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -7.82, deficit  1.72, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -8.05, deficit  3.84, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -9.15, deficit  3.71, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -9.69, deficit  4.09, prct   0.00; 
Better:   8 Equal:   0 Score 0.00              GCAACUC (   1) MLPS -10.64 deficit   8.88 prct   0.00 CutScore   7.47;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F G 1468 C 1474'

 scores better against   8 groups: HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.32, deficit  2.20, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.23, deficit  2.63, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.50, deficit  3.16, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -8.91, deficit  2.78, prct   0.00; HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  5, 3, MLPS -9.37, deficit  2.67, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              CGGCGAG (   1) MLPS -10.70 deficit   8.94 prct   0.00 CutScore   6.79;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  487 G  493'

 scores better against   4 groups: HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  0, 0, MLPS -3.35, deficit  0.00, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -8.38, deficit  2.01, prct   0.00; HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.85, deficit  3.50, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -9.11, deficit  4.63, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               UCACCG (   1) MLPS -11.11 deficit   9.35 prct   0.00 CutScore   2.57;  Ed  0, 0
ans =

    ' HL_37824.7  8DP3 U   62 G   67'

 scores better against   5 groups: HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 1, MLPS -7.70, deficit  2.27, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.74, deficit  2.64, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -9.06, deficit  2.96, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  3, 2, MLPS -9.17, deficit  2.49, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -9.38, deficit  3.24, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              UUAACAG (   1) MLPS -11.16 deficit   9.40 prct   0.00 CutScore   2.01;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE U 1858 G 1864'

 scores better against   6 groups: HL_13529.1,  7 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -7.54, deficit  1.10, prct   0.00; HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  3, 1, MLPS -9.22, deficit  6.82, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -9.29, deficit  4.17, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -10.33, deficit  4.23, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -10.35, deficit  4.22, prct   0.00; 
Better:  13 Equal:   0 Score 0.00               CAGCCG (   1) MLPS -11.52 deficit   9.76 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L C  522 G  527'

 scores better against  13 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  3, 2, MLPS -6.08, deficit  1.19, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -6.26, deficit  0.16, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -7.04, deficit  1.61, prct   0.00; HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  3, 2, MLPS -7.49, deficit  4.27, prct   0.00; HL_78347.4,  6 NTs, cWW-F-F-F-F                             , Ed  5, 3, MLPS -7.95, deficit -0.11, prct   0.00; 
Better:  13 Equal:   0 Score 0.00               CAGCCG (   1) MLPS -11.52 deficit   9.76 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  4LFB C  522 G  527'

 scores better against  13 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  3, 2, MLPS -6.08, deficit  1.19, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -6.26, deficit  0.16, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -7.04, deficit  1.61, prct   0.00; HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  3, 2, MLPS -7.49, deficit  4.27, prct   0.00; HL_78347.4,  6 NTs, cWW-F-F-F-F                             , Ed  5, 3, MLPS -7.95, deficit -0.11, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             UGAUAAGG (   1) MLPS -11.68 deficit   9.92 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  4WF9 U  999 G 1006'

 scores better against   1 groups: HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -10.26, deficit  2.87, prct   0.00; 
Better:   9 Equal:   0 Score 0.00              GUAAUUC (   1) MLPS -11.71 deficit   9.95 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  8CRE G  152 C  158'

 scores better against   9 groups: HL_69752.2,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -6.42, deficit  0.95, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 2, MLPS -7.75, deficit  2.08, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.23, deficit  5.77, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.50, deficit  3.16, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.62, deficit  1.61, prct   0.00; 
Better:   9 Equal:   0 Score 0.00              GUAAUUC (   1) MLPS -11.71 deficit   9.95 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  8P9A G  154 C  160'

 scores better against   9 groups: HL_69752.2,  3 NTs, cWW-F                                   , Ed  3, 1, MLPS -6.42, deficit  0.95, prct   0.00; HL_87954.2,  5 NTs, cWW-tSW-F                               , Ed  3, 2, MLPS -7.75, deficit  2.08, prct   0.00; HL_86883.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.23, deficit  5.77, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.50, deficit  3.16, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.62, deficit  1.61, prct   0.00; 
Better:  22 Equal:   0 Score 0.00               CUUCGG (   1) MLPS -13.05 deficit  11.29 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  3AM1 C   32 G   37'

 scores better against  22 groups: HL_34617.5,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -1.94, deficit  0.00, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -4.48, deficit  0.00, prct   0.00; HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -4.49, deficit  0.82, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.92, deficit  2.12, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -6.12, deficit  0.20, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              UCAGAAG (   1) MLPS -13.74 deficit  11.98 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  4V9F U  493 G  499'

 scores better against   6 groups: HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -7.74, deficit  1.29, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.60, deficit  3.00, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -10.32, deficit  1.93, prct   0.00; HL_10540.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -11.55, deficit  4.35, prct   0.00; HL_50537.6,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -12.04, deficit  3.96, prct   0.00; 
Better:   3 Equal:   0 Score 0.00             AGCUAACU (   1) MLPS -13.83 deficit  12.07 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  7A0S A  966 U  973'

 scores better against   3 groups: HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 3, MLPS -8.64, deficit  3.30, prct   0.00; HL_10540.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -10.40, deficit  3.19, prct   0.00; HL_04783.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -11.72, deficit  5.62, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             UGCUAACG (   1) MLPS -14.00 deficit  12.24 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_37824.7  5J7L U  955 G  962'

 matches the original group, cWW-F-F-F-F
Group 102 is from HL_39243.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_39243.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00              GAAAAUC (   1) MLPS  -7.01 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_39243.1  7A0S G 1508 C 1514'

 scores better against   3 groups: HL_13529.1,  7 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -5.66, deficit -0.78, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -5.80, deficit  0.45, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -6.22, deficit  1.10, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -8.90 deficit   1.90 prct   0.00 CutScore  80.03;  Ed  0, 0
ans =

    ' HL_39243.1  3BT7 G   53 C   61'

 scores better against   2 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  0, 0, MLPS -5.60, deficit  3.24, prct   0.00; 
Group 114 is from HL_47787.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_47787.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CAUGCCG (   1) MLPS  -3.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47787.2  5J7L C   38 G   44'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00              CAUGCCG (   1) MLPS  -3.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47787.2  1MJI C   38 G   44'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00              CAUGCCG (   1) MLPS  -3.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47787.2  4WF9 C   36 G   42'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00              CAUGCCG (   1) MLPS  -3.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47787.2  7A0S C   40 G   46'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUCCG (   1) MLPS  -4.38 deficit   0.65 prct   0.00 CutScore  93.42;  Ed  0, 0
ans =

    ' HL_47787.2  8P9A C   36 G   41'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00              CAUCCCG (   1) MLPS  -4.82 deficit   1.10 prct   0.00 CutScore  88.95;  Ed  0, 0
ans =

    ' HL_47787.2  4V9F C   37 G   43'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00              CAUUCCG (   1) MLPS  -4.82 deficit   1.10 prct   0.00 CutScore  88.95;  Ed  0, 0
ans =

    ' HL_47787.2  9DFE C   38 G   44'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGUUCG (   1) MLPS  -5.48 deficit   1.75 prct   0.00 CutScore  82.37;  Ed  0, 0
ans =

    ' HL_47787.2  8OI5 C   36 G   41'

 matches the original group, cWW-F-F-F-F
Better:  22 Equal:   0 Score 0.00               UGAAAA (   1) MLPS -10.46 deficit   6.73 prct   0.00 CutScore  32.30;  Ed  0, 0
ans =

    ' HL_47787.2  7A0S U  622 A  627'

 scores better against  22 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.30, deficit  1.54, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 0, MLPS -4.40, deficit  0.20, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.55, deficit  0.22, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.38, deficit -0.72, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.75, deficit  0.00, prct   0.00; 
Better:   5 Equal:   0 Score 0.00             CAUUUUGG (   1) MLPS -10.80 deficit   7.08 prct   0.00 CutScore  28.84;  Ed  0, 0
ans =

    ' HL_47787.2  6AAY C   37 G   44'

 scores better against   5 groups: HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  2, 2, MLPS -7.36, deficit  2.72, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -8.24, deficit  2.31, prct   0.00; HL_09452.1,  5 NTs, cWW-F-F-F                               , Ed  5, 3, MLPS -9.82, deficit  1.11, prct   0.00; HL_28075.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 1, MLPS -10.08, deficit  2.26, prct   0.00; HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -10.09, deficit  5.00, prct   0.00; 
Group 115 is from HL_47854.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_47854.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GAAAGACC (   1) MLPS  -4.91 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47854.1  4Z0C G    4 C   11'

 matches the original group, cWW-F-F-F-F
Group 129 is from HL_52953.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_52953.3
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -4.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_52953.3  4XWF G   24 C   29'

 scores better against   1 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -4.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_52953.3  8VVJ G   24 C   29'

 scores better against   1 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -4.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_52953.3  4KR9 G   19 C   24'

 scores better against   1 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGUGAG (   1) MLPS  -5.11 deficit   0.91 prct   0.00 CutScore  90.38;  Ed  0, 0
ans =

    ' HL_52953.3  2QUS C   42 G   47'

 scores better against   1 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.86, deficit  3.10, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CGUGAG (   1) MLPS  -5.11 deficit   0.91 prct   0.00 CutScore  90.38;  Ed  0, 0
ans =

    ' HL_52953.3  2QUW C   42 G   47'

 scores better against   1 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.86, deficit  3.10, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               CGAGUG (   1) MLPS  -5.63 deficit   1.42 prct   0.00 CutScore  85.01;  Ed  0, 0
ans =

    ' HL_52953.3  3ADD C  47D G  47I'

 scores better against   2 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.89, deficit  1.10, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.58, deficit  3.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CAAUGG (   1) MLPS  -5.73 deficit   1.53 prct   0.00 CutScore  83.87;  Ed  0, 0
ans =

    ' HL_52953.3  8UO6 C   49 G   54'

 scores better against   1 groups: HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.61, deficit  1.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CAAUGG (   1) MLPS  -5.73 deficit   1.53 prct   0.00 CutScore  83.87;  Ed  0, 0
ans =

    ' HL_52953.3  8UO6 C   49 G   54'

 scores better against   1 groups: HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.61, deficit  1.20, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               GAGUAC (   1) MLPS  -6.29 deficit   2.09 prct   0.00 CutScore  78.05;  Ed  0, 0
ans =

    ' HL_52953.3  6U8D G  161 C  166'

 scores better against   2 groups: HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -4.29, deficit  0.23, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  1, 1, MLPS -6.09, deficit  1.21, prct   0.00; 
Group 147 is from HL_59843.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_59843.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00               CGAGAG (   1) MLPS  -5.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_59843.1  1F1T C   14 G   19'

 scores better against   2 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.13, deficit  1.37, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.16, deficit -0.04, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              UCAAUGA (   1) MLPS  -6.72 deficit   0.98 prct   0.00 CutScore  89.73;  Ed  0, 0
ans =

    ' HL_59843.1  9C2K U   19 A   25'

 matches the original group, cWW-F-F-F-F
Group 157 is from HL_65794.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_65794.5
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               UGCCAA (   1) MLPS  -4.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_65794.5  5J7L U 2701 A 2706'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGCCAA (   1) MLPS  -4.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_65794.5  4WF9 U 2728 A 2733'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               CGCCCG (   1) MLPS  -5.38 deficit   0.90 prct   0.00 CutScore  90.51;  Ed  0, 0
ans =

    ' HL_65794.5  1U6B C   70 G   75'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UACCAA (   1) MLPS  -5.57 deficit   1.10 prct   0.00 CutScore  88.44;  Ed  0, 0
ans =

    ' HL_65794.5  7A0S U 2680 A 2685'

 matches the original group, cWW-F-F-F-F
Better:   5 Equal:   0 Score 0.00               CGAGAG (   1) MLPS  -6.15 deficit   1.67 prct   0.00 CutScore  82.39;  Ed  0, 0
ans =

    ' HL_65794.5  4V9F C 2737 G 2742'

 scores better against   5 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.13, deficit  1.37, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -4.16, deficit -0.04, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -5.75, deficit  0.00, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.10, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               UGAUCA (   1) MLPS  -6.18 deficit   1.71 prct   0.00 CutScore  82.02;  Ed  0, 0
ans =

    ' HL_65794.5  8CRE U 3040 A 3045'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               UGAUCA (   1) MLPS  -6.18 deficit   1.71 prct   0.00 CutScore  82.02;  Ed  0, 0
ans =

    ' HL_65794.5  8P9A U 3068 A 3073'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00              UUGCCAA (   1) MLPS  -6.26 deficit   1.78 prct   0.00 CutScore  81.22;  Ed  0, 0
ans =

    ' HL_65794.5  7YSE U   32 A   38'

 matches the original group, cWW-F-F-F-F
Better:   9 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -6.62 deficit   2.15 prct   0.00 CutScore  77.42;  Ed  0, 0
ans =

    ' HL_65794.5  6UFM G   50 C   55'

 scores better against   9 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.33, deficit  0.00, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.48, deficit -0.62, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.82, deficit  0.07, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              GCAAUAC (   1) MLPS  -8.40 deficit   3.93 prct   0.00 CutScore  58.64;  Ed  0, 0
ans =

    ' HL_65794.5  8KEB G   34 C   40'

 scores better against   6 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.76, deficit  1.01, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.32, deficit  2.20, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.43, deficit  3.37, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 1, MLPS -7.61, deficit  0.05, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  3, 2, MLPS -8.24, deficit  2.80, prct   0.00; 
Better:   3 Equal:   0 Score 0.00              CGCCGAG (   1) MLPS  -8.59 deficit   4.11 prct   0.00 CutScore  56.69;  Ed  0, 0
ans =

    ' HL_65794.5  4PQV C   28 G   34'

 scores better against   3 groups: HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  1, 1, MLPS -6.05, deficit  2.71, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -6.28, deficit -0.51, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.28, deficit  1.68, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              GUCCCGC (   1) MLPS  -9.07 deficit   4.59 prct   0.00 CutScore  51.66;  Ed  0, 0
ans =

    ' HL_65794.5  4GXY G   65 C   71'

 scores better against   2 groups: HL_30680.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -8.01, deficit  1.54, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 3, MLPS -9.06, deficit  0.33, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              GCACGGC (   1) MLPS  -9.32 deficit   4.84 prct   0.00 CutScore  49.01;  Ed  0, 0
ans =

    ' HL_65794.5  8K1E G   23 C   29'

 scores better against   4 groups: HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -8.34, deficit  3.25, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.48, deficit  2.88, prct   0.00; HL_30680.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.56, deficit  2.10, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -8.99, deficit  3.24, prct   0.00; 
Better:   8 Equal:   0 Score 0.00               UGGUUG (   1) MLPS  -9.63 deficit   5.16 prct   0.00 CutScore  45.72;  Ed  0, 0
ans =

    ' HL_65794.5  3R4F U   52 G   57'

 scores better against   8 groups: HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -7.83, deficit  2.30, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -7.84, deficit  1.93, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -8.32, deficit  3.43, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  3, 2, MLPS -8.48, deficit  3.36, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -9.07, deficit  5.90, prct   0.00; 
Group 172 is from HL_71391.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_71391.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               GUUCAC (   1) MLPS  -3.80 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_71391.1  3D2V G   17 C   22'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00               GGGAAC (   1) MLPS  -4.77 deficit   0.97 prct   0.00 CutScore  89.77;  Ed  0, 0
ans =

    ' HL_71391.1  9DFE G  139 C 142A'

 matches the original group, cWW-F-F-F-F
Group 190 is from HL_78347.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_78347.4
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   5 Equal:   0 Score 0.00               UGUUUG (   1) MLPS  -8.06 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_78347.4  8CRE U  188 G  193'

 scores better against   5 groups: HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 0, MLPS -6.22, deficit  0.69, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  3, 2, MLPS -7.28, deficit  3.09, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -7.59, deficit  3.20, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  3, 2, MLPS -7.75, deficit  2.63, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -8.05, deficit  2.13, prct   0.00; 
Better:  21 Equal:   0 Score 0.00               GGUCUC (   1) MLPS  -9.99 deficit   1.94 prct   0.00 CutScore  79.63;  Ed  0, 0
ans =

    ' HL_78347.4  3DIL G  149 C  154'

 scores better against  21 groups: HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -6.06, deficit  2.27, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  3, 2, MLPS -6.17, deficit  0.25, prct   0.00; HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -6.66, deficit  2.27, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  3, 2, MLPS -6.74, deficit  2.55, prct   0.00; HL_47787.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.76, deficit  3.03, prct   0.00; 
Better:   0 Equal:   0 Score 1.00          UAGAGGCCCAG (   1) MLPS -10.84 deficit   2.79 prct   0.00 CutScore  70.66;  Ed  0, 0
ans =

    ' HL_78347.4  5HR6 U   12 G   22'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00          UAGAGGCCCAG (   1) MLPS -10.84 deficit   2.79 prct   0.00 CutScore  70.66;  Ed  0, 0
ans =

    ' HL_78347.4  5HR7 U   13 G   22'

 matches the original group, cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00          UAGAGGCCCAG (   1) MLPS -10.84 deficit   2.79 prct   0.00 CutScore  70.66;  Ed  0, 0
ans =

    ' HL_78347.4  2DER U   13 G   22'

 matches the original group, cWW-F-F-F-F
Better:  10 Equal:   0 Score 0.00            CCUGAUAAG (   1) MLPS -11.57 deficit   3.51 prct   0.00 CutScore  63.03;  Ed  0, 0
ans =

    ' HL_78347.4  1QU2 C   31 G   39'

 scores better against  10 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 0, MLPS -4.92, deficit  0.17, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.57, deficit  0.00, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -8.13, deficit  2.56, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.22, deficit  3.62, prct   0.00; HL_77082.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -9.74, deficit  2.23, prct   0.00; 
Better:  10 Equal:   0 Score 0.00            CCUGAUAAG (   1) MLPS -11.57 deficit   3.51 prct   0.00 CutScore  63.03;  Ed  0, 0
ans =

    ' HL_78347.4  1FFY C   31 G   39'

 scores better against  10 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 0, MLPS -4.92, deficit  0.17, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.57, deficit  0.00, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -8.13, deficit  2.56, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.22, deficit  3.62, prct   0.00; HL_77082.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -9.74, deficit  2.23, prct   0.00; 
Better:   7 Equal:   0 Score 0.00           UAGCGGUUAG (   1) MLPS -13.30 deficit   5.24 prct   0.00 CutScore  44.80;  Ed  0, 0
ans =

    ' HL_78347.4  1N78 U  513 G  522'

 scores better against   7 groups: HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  2, 2, MLPS -10.58, deficit  3.06, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  3, 2, MLPS -10.85, deficit  3.72, prct   0.00; HL_04642.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 1, MLPS -10.95, deficit  3.08, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  2, 1, MLPS -11.81, deficit  4.46, prct   0.00; HL_49941.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -12.87, deficit  4.80, prct   0.00; 
Better:   3 Equal:   0 Score 0.00            CCUUCGUGG (   1) MLPS -14.95 deficit   6.89 prct   0.00 CutScore  27.43;  Ed  0, 0
ans =

    ' HL_78347.4  6WBR C   55 G   63'

 scores better against   3 groups: HL_09452.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -10.36, deficit  1.64, prct   0.00; HL_20535.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -11.05, deficit  0.65, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -12.33, deficit  3.60, prct   0.00; 
Group 228 is from HL_89893.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_89893.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CAGAGCG (   1) MLPS  -4.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89893.1  4RUM C   27 G   33'

 matches the original group, cWW-F-F-F-F
Group 238 is from HL_93535.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_93535.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   4 Equal:   0 Score 0.00               CGUAAG (   1) MLPS  -6.10 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93535.1  7A0S C  133 G  138'

 scores better against   4 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -3.49, deficit  1.73, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.11, deficit  0.91, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  1, 0, MLPS -5.54, deficit  1.07, prct   0.00; HL_71391.1,  5 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.81, deficit  2.01, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CAGCCG (   1) MLPS  -6.26 deficit   0.16 prct   0.00 CutScore  98.29;  Ed  0, 0
ans =

    ' HL_93535.1  8CRE C  567 G  572'

 scores better against   1 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  3, 2, MLPS -6.08, deficit  1.19, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               CAGCCG (   1) MLPS  -6.26 deficit   0.16 prct   0.00 CutScore  98.29;  Ed  0, 0
ans =

    ' HL_93535.1  8P9A C  569 G  574'

 scores better against   1 groups: HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  3, 2, MLPS -6.08, deficit  1.19, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              CGAACAG (   1) MLPS  -7.52 deficit   1.42 prct   0.00 CutScore  85.09;  Ed  0, 0
ans =

    ' HL_93535.1  7A0S C 1797 G 1803'

 scores better against   4 groups: HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.78, deficit  1.86, prct   0.00; HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -6.00, deficit  4.24, prct   0.00; HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  1, 1, MLPS -6.98, deficit  4.58, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  2, 2, MLPS -7.25, deficit  1.81, prct   0.00; 
Better:   2 Equal:   0 Score 0.00              UGAUAAA (   1) MLPS  -7.64 deficit   1.54 prct   0.00 CutScore  83.76;  Ed  0, 0
ans =

    ' HL_93535.1  5J7L U 1165 A 1171'

 scores better against   2 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -6.71, deficit  1.37, prct   0.00; HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -7.55, deficit  1.49, prct   0.00; 
Better:   0 Equal:   0 Score 1.00               UAAGGG (   1) MLPS  -7.82 deficit   1.72 prct   0.00 CutScore  81.94;  Ed  0, 0
ans =

    ' HL_93535.1  8P9A U  368 G  373'

 matches the original group, cWW-F-F-F-F
Group 244 is from HL_97917.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_97917.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           UUUUUUAAUG (   1) MLPS  -8.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_97917.2  8P9A U 1055 G 1064'

 matches the original group, cWW-F-F-F-F
Better:   4 Equal:   0 Score 0.00             CUUCAACG (   1) MLPS  -8.53 deficit   0.13 prct   0.00 CutScore  98.59;  Ed  0, 0
ans =

    ' HL_97917.2  3OIN C    4 G   11'

 scores better against   4 groups: HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  3, 2, MLPS -7.86, deficit  2.07, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 2, MLPS -8.32, deficit  1.74, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -8.33, deficit  1.32, prct   0.00; HL_50318.1,  6 NTs, cWW-cSH-F-F                             , Ed  3, 3, MLPS -8.36, deficit  2.34, prct   0.00; 
Better:   5 Equal:   0 Score 0.00              GGAGGAC (   1) MLPS  -9.58 deficit   1.18 prct   0.00 CutScore  87.53;  Ed  0, 0
ans =

    ' HL_97917.2  4PQV G   57 C   63'

 scores better against   5 groups: HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.27, deficit  2.27, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -7.61, deficit  1.86, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.75, deficit  2.15, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  3, 2, MLPS -7.97, deficit  0.41, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -8.51, deficit  2.15, prct   0.00; 
Group  12 is from HL_04641.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_04641.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CAAGACGACG (   1) MLPS  -6.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04641.1  7OS0 C   16 G   25'

 matches the original group, cWW-F-F-F-F-F
Group  13 is from HL_04642.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_04642.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00          CAGGCGGUUAG (   1) MLPS  -7.87 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04642.1  6UFM C   13 G   23'

 scores better against   1 groups: HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.72, deficit  0.00, prct   0.00; 
Better:   2 Equal:   0 Score 0.00          CAGGUGGUUAG (   1) MLPS  -8.38 deficit   0.51 prct   0.00 CutScore  97.15;  Ed  0, 0
ans =

    ' HL_04642.1  8VU0 C   13 G   23'

 scores better against   2 groups: HL_49941.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -8.07, deficit  0.00, prct   0.00; HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -8.33, deficit  1.61, prct   0.00; 
Better:   4 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.96 deficit   1.09 prct   0.00 CutScore  93.91;  Ed  0, 0
ans =

    ' HL_04642.1  7OSM C   13 G   22'

 scores better against   4 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.35, deficit  1.01, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -8.82, deficit  1.68, prct   0.00; HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  0, 0, MLPS -8.87, deficit  1.35, prct   0.00; 
Group  29 is from HL_10453.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_10453.3
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              GCUCAAC (   1) MLPS  -5.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_10453.3  5J7L G  617 C  623'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00              GCUCAAC (   1) MLPS  -5.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_10453.3  4LFB G  617 C  623'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUUUGACU (   1) MLPS  -7.40 deficit   1.80 prct   0.00 CutScore  83.69;  Ed  0, 0
ans =

    ' HL_10453.3  8H0S A   31 U   39'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUUUGACU (   1) MLPS  -7.40 deficit   1.80 prct   0.00 CutScore  83.69;  Ed  0, 0
ans =

    ' HL_10453.3  8H1B A   31 U   39'

 matches the original group, cWW-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00            GCUGCGAAC (   1) MLPS  -7.80 deficit   2.21 prct   0.00 CutScore  80.04;  Ed  0, 0
ans =

    ' HL_10453.3  6MPI G   31 C   39'

 scores better against   2 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  0, 0, MLPS -6.43, deficit  1.68, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -7.72, deficit  2.14, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            GCUGCGAAC (   1) MLPS  -7.80 deficit   2.21 prct   0.00 CutScore  80.04;  Ed  0, 0
ans =

    ' HL_10453.3  6MKN G   31 C   39'

 scores better against   2 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  0, 0, MLPS -6.43, deficit  1.68, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -7.72, deficit  2.14, prct   0.00; 
Better:   8 Equal:   0 Score 0.00             GCGAUCAC (   1) MLPS -10.82 deficit   5.22 prct   0.00 CutScore  52.77;  Ed  0, 0
ans =

    ' HL_10453.3  6UFH G   13 C   20'

 scores better against   8 groups: HL_77082.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -7.94, deficit  0.43, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  3, 3, MLPS -9.07, deficit  2.65, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -9.20, deficit  0.47, prct   0.00; HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  5, 3, MLPS -9.29, deficit  2.59, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -9.94, deficit  2.21, prct   0.00; 
Better:  10 Equal:   0 Score 0.00             GUUUAAUC (   1) MLPS -10.91 deficit   5.31 prct   0.00 CutScore  51.98;  Ed  0, 0
ans =

    ' HL_10453.3  3OXE G   17 C   24'

 scores better against  10 groups: HL_50318.1,  6 NTs, cWW-cSH-F-F                             , Ed  3, 1, MLPS -6.23, deficit  0.22, prct   0.00; HL_25967.2,  7 NTs, cWW-cWW-F-F-F                           , Ed  1, 1, MLPS -6.90, deficit  2.46, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -7.10, deficit  1.66, prct   0.00; HL_77436.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.15, deficit  0.91, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -7.24, deficit -1.15, prct   0.00; 
Better:   2 Equal:   0 Score 0.00             GCACCGUC (   1) MLPS -11.51 deficit   5.92 prct   0.00 CutScore  46.51;  Ed  0, 0
ans =

    ' HL_10453.3  2A43 G    6 C   13'

 scores better against   2 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  3, 3, MLPS -7.46, deficit  2.03, prct   0.00; HL_30680.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.92, deficit  2.45, prct   0.00; 
Group  31 is from HL_10540.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_10540.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CCGAAGG (   1) MLPS  -7.21 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_10540.1  5JEA C  -38 G  -32'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            UGGCUAAAA (   1) MLPS  -8.31 deficit   1.10 prct   0.00 CutScore  89.38;  Ed  0, 0
ans =

    ' HL_10540.1  5Y58 U  297 A  305'

 matches the original group, cWW-F-F-F-F-F
Group  41 is from HL_15574.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_15574.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00              GAAACAC (   1) MLPS  -5.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_15574.1  4R4V G  670 C  676'

 scores better against   1 groups: HL_22584.6,  5 NTs, cWW-tSW-F                               , Ed  0, 0, MLPS -2.40, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             GUAAAAGC (   1) MLPS  -5.82 deficit   0.69 prct   0.00 CutScore  92.79;  Ed  0, 0
ans =

    ' HL_15574.1  6VMY G  253 C  260'

 matches the original group, cWW-F-F-F-F-F
Group  59 is from HL_22622.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_22622.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00             CAUGGACG (   1) MLPS  -7.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22622.1  9DFE C 1451 G 1459'

 scores better against   1 groups: HL_47854.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -7.18, deficit  2.27, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            CGACGGUUG (   1) MLPS  -9.01 deficit   1.54 prct   0.00 CutScore  86.62;  Ed  0, 0
ans =

    ' HL_22622.1  5J7L C 1451 G 1459'

 matches the original group, cWW-F-F-F-F-F
Group  61 is from HL_23115.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_23115.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CAGGCGGUUAG (   1) MLPS  -6.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_23115.1  6UFG C   13 G   23'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGGCGGUUAG (   1) MLPS  -6.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_23115.1  6UFH C   13 G   23'

 matches the original group, cWW-F-F-F-F-F
Group  71 is from HL_28075.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_28075.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GAUUUUUC (   1) MLPS  -7.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28075.1  8CRE G 1562 C 1569'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CUUUUUAG (   1) MLPS  -8.03 deficit   0.20 prct   0.00 CutScore  97.93;  Ed  0, 0
ans =

    ' HL_28075.1  8CRE C 3160 G 3167'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AUGUCGUUU (   1) MLPS  -9.43 deficit   1.60 prct   0.00 CutScore  83.78;  Ed  0, 0
ans =

    ' HL_28075.1  6N5P A   14 U   22'

 matches the original group, cWW-F-F-F-F-F
Better:   6 Equal:   0 Score 0.00             CCGAAUAG (   1) MLPS  -9.79 deficit   1.97 prct   0.00 CutScore  80.11;  Ed  0, 0
ans =

    ' HL_28075.1  7A0S C  651 G  658'

 scores better against   6 groups: HL_02817.2,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -6.74, deficit  1.95, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 2, MLPS -6.90, deficit  0.32, prct   0.00; HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  3, 3, MLPS -8.11, deficit  1.41, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -9.34, deficit  0.61, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -9.53, deficit  1.79, prct   0.00; 
Group  75 is from HL_29762.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_29762.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          UUGAUAUGAUG (   1) MLPS  -9.04 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_29762.1  8P9A U 1347 G 1357'

 matches the original group, cWW-F-F-F-F-F
Group  79 is from HL_30680.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_30680.3
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              GACUGGC (   1) MLPS  -6.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_30680.3  5FJC G   23 C   29'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00              GACUGGC (   1) MLPS  -6.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_30680.3  4AOB G   23 C   29'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00              GACUGGC (   1) MLPS  -6.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_30680.3  4KQY G   23 C   29'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00              GACUGGC (   1) MLPS  -6.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_30680.3  3V7E G   23 C   29'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGACCACC (   1) MLPS  -7.34 deficit   0.88 prct   0.00 CutScore  90.77;  Ed  0, 0
ans =

    ' HL_30680.3  9DFE G  410 C  417'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGACCACC (   1) MLPS  -7.34 deficit   0.88 prct   0.00 CutScore  90.77;  Ed  0, 0
ans =

    ' HL_30680.3  7A0S G  423 C  430'

 matches the original group, cWW-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             GGACCAUC (   1) MLPS  -7.68 deficit   1.21 prct   0.00 CutScore  87.23;  Ed  0, 0
ans =

    ' HL_30680.3  4WF9 G  456 C  463'

 scores better against   1 groups: HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.63, deficit  2.28, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GGACCAUC (   1) MLPS  -7.68 deficit   1.21 prct   0.00 CutScore  87.23;  Ed  0, 0
ans =

    ' HL_30680.3  5J7L G  410 C  417'

 scores better against   1 groups: HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.63, deficit  2.28, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              GUCCCGC (   1) MLPS  -8.01 deficit   1.54 prct   0.00 CutScore  83.75;  Ed  0, 0
ans =

    ' HL_30680.3  6VMY G  268 C  274'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUGGCAGC (   1) MLPS  -9.06 deficit   2.59 prct   0.00 CutScore  72.76;  Ed  0, 0
ans =

    ' HL_30680.3  3HHN G   75 C   82'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUGGCAGC (   1) MLPS  -9.06 deficit   2.59 prct   0.00 CutScore  72.76;  Ed  0, 0
ans =

    ' HL_30680.3  3IVK G   75 C   82'

 matches the original group, cWW-F-F-F-F-F
Better:   9 Equal:   0 Score 0.00              GCUGGAC (   1) MLPS -10.04 deficit   3.57 prct   0.00 CutScore  62.40;  Ed  0, 0
ans =

    ' HL_30680.3  6MWN G  650 C  656'

 scores better against   9 groups: HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -7.24, deficit  2.15, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -7.91, deficit  2.31, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.05, deficit  2.46, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -8.12, deficit  0.56, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -8.21, deficit  1.73, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              UUUCCAG (   1) MLPS -11.91 deficit   5.44 prct   0.00 CutScore  42.76;  Ed  0, 0
ans =

    ' HL_30680.3  5U30 U   43 G   49'

 scores better against   6 groups: HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -7.91, deficit  1.47, prct   0.00; HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  1, 1, MLPS -9.16, deficit  5.81, prct   0.00; HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -10.03, deficit  3.24, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -10.12, deficit  1.73, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  3, 2, MLPS -10.15, deficit  3.47, prct   0.00; 
Better:  14 Equal:   0 Score 0.00            ACUCAAGAU (   1) MLPS -14.41 deficit   7.94 prct   0.00 CutScore  16.43;  Ed  0, 0
ans =

    ' HL_30680.3  1WZ2 A  934 U  942'

 scores better against  14 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -6.31, deficit  1.56, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  1, 1, MLPS -6.78, deficit  1.61, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -7.01, deficit  1.44, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  2, 2, MLPS -8.40, deficit  2.20, prct   0.00; HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  3, 3, MLPS -9.21, deficit  4.42, prct   0.00; 
Better:   3 Equal:   0 Score 0.00            GACGGACAC (   1) MLPS -14.84 deficit   8.37 prct   0.00 CutScore  11.88;  Ed  0, 0
ans =

    ' HL_30680.3  4OQU G   32 C   40'

 scores better against   3 groups: HL_50860.2,  9 NTs, cWW-F-cWH-F-F-F-F                       , Ed  2, 1, MLPS -6.74, deficit  2.11, prct   0.00; HL_97733.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  5, 3, MLPS -12.01, deficit  3.92, prct   0.00; HL_07951.3,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -12.15, deficit  2.41, prct   0.00; 
Group  81 is from HL_31585.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_31585.4
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GUUUCUAC (   1) MLPS  -6.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31585.4  4XNR G   46 C   53'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUUUCUAC (   1) MLPS  -6.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31585.4  1Y26 G   46 C   53'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUUUCUAC (   1) MLPS  -6.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31585.4  4FEN G   46 C   53'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUUUCUAC (   1) MLPS  -6.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31585.4  1Y27 G   46 C   53'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUUUCUAC (   1) MLPS  -6.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31585.4  3RKF G   46 C   53'

 matches the original group, cWW-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             GUUUCGAC (   1) MLPS  -7.08 deficit   0.64 prct   0.00 CutScore  93.31;  Ed  0, 0
ans =

    ' HL_31585.4  9IWF G   32 C   39'

 scores better against   1 groups: HL_26934.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -6.80, deficit  3.04, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              GUUUUAC (   1) MLPS  -7.95 deficit   1.50 prct   0.00 CutScore  84.22;  Ed  0, 0
ans =

    ' HL_31585.4  4LFB G   80 C   89'

 scores better against   6 groups: HL_67667.2,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -5.88, deficit  1.49, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -6.42, deficit  0.95, prct   0.00; HL_08100.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.66, deficit  1.56, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.11, deficit  0.63, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -7.57, deficit  2.04, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             AGCAGAAU (   1) MLPS  -8.13 deficit   1.68 prct   0.00 CutScore  82.29;  Ed  0, 0
ans =

    ' HL_31585.4  8CRE A 2869 U 2876'

 scores better against   1 groups: HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -7.77, deficit  3.86, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             AGCAGAAU (   1) MLPS  -8.13 deficit   1.68 prct   0.00 CutScore  82.29;  Ed  0, 0
ans =

    ' HL_31585.4  8P9A A 2897 U 2904'

 scores better against   1 groups: HL_89567.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -7.77, deficit  3.86, prct   0.00; 
Better:   2 Equal:   0 Score 0.00             GCUUCCAC (   1) MLPS  -8.24 deficit   1.79 prct   0.00 CutScore  81.11;  Ed  0, 0
ans =

    ' HL_31585.4  4LX6 G   46 C   53'

 scores better against   2 groups: HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.81, deficit  1.32, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -8.18, deficit -0.06, prct   0.00; 
Better:   2 Equal:   0 Score 0.00             GCUUCCAC (   1) MLPS  -8.24 deficit   1.79 prct   0.00 CutScore  81.11;  Ed  0, 0
ans =

    ' HL_31585.4  3LA5 G   46 C   53'

 scores better against   2 groups: HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.81, deficit  1.32, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -8.18, deficit -0.06, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             UGCAGAAG (   1) MLPS  -8.30 deficit   1.86 prct   0.00 CutScore  80.45;  Ed  0, 0
ans =

    ' HL_31585.4  4V9F U 2563 G 2570'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             UGAAGUAG (   1) MLPS  -8.65 deficit   2.21 prct   0.00 CutScore  76.75;  Ed  0, 0
ans =

    ' HL_31585.4  5J7L U 2528 G 2535'

 matches the original group, cWW-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             UGAAGAAG (   1) MLPS  -8.92 deficit   2.48 prct   0.00 CutScore  73.93;  Ed  0, 0
ans =

    ' HL_31585.4  9DFE U 2528 G 2535'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -7.87, deficit  5.14, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             UGAAGAAG (   1) MLPS  -8.92 deficit   2.48 prct   0.00 CutScore  73.93;  Ed  0, 0
ans =

    ' HL_31585.4  7A0S U 2507 G 2514'

 scores better against   1 groups: HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -7.87, deficit  5.14, prct   0.00; 
Better:   3 Equal:   0 Score 0.00             GGUUGGCC (   1) MLPS  -9.19 deficit   2.74 prct   0.00 CutScore  71.13;  Ed  0, 0
ans =

    ' HL_31585.4  6UFH G   70 C   77'

 scores better against   3 groups: HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -7.74, deficit  0.00, prct   0.00; HL_50318.1,  6 NTs, cWW-cSH-F-F                             , Ed  5, 3, MLPS -8.40, deficit  2.38, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 3, MLPS -8.77, deficit  0.38, prct   0.00; 
Better:  13 Equal:   0 Score 0.00             GCUAAAAC (   1) MLPS  -9.34 deficit   2.90 prct   0.00 CutScore  69.52;  Ed  0, 0
ans =

    ' HL_31585.4  6JXM G   41 C   48'

 scores better against  13 groups: HL_77082.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -5.97, deficit -1.54, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.34, deficit -0.23, prct   0.00; HL_00914.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.59, deficit  1.10, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  1, 1, MLPS -6.71, deficit  0.92, prct   0.00; HL_02817.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -7.30, deficit  2.51, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             UGUAGUCG (   1) MLPS  -9.35 deficit   2.91 prct   0.00 CutScore  69.41;  Ed  0, 0
ans =

    ' HL_31585.4  4WF9 U 2555 G 2562'

 matches the original group, cWW-F-F-F-F-F
Better:   7 Equal:   0 Score 0.00              CUGCGUG (   1) MLPS -11.54 deficit   5.09 prct   0.00 CutScore  46.40;  Ed  0, 0
ans =

    ' HL_31585.4  7TZS C   27 G   33'

 scores better against   7 groups: HL_66103.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -7.89, deficit  1.10, prct   0.00; HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  2, 2, MLPS -9.51, deficit  6.17, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -9.77, deficit  5.98, prct   0.00; HL_28075.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.86, deficit  2.04, prct   0.00; HL_81100.2,  2 NTs, cWW                                     , Ed  1, 1, MLPS -11.15, deficit  5.23, prct   0.00; 
Better:   4 Equal:   0 Score 0.00             UUCGGGGA (   1) MLPS -14.78 deficit   8.33 prct   0.00 CutScore  12.29;  Ed  0, 0
ans =

    ' HL_31585.4  5VPO U   32 A   39'

 scores better against   4 groups: HL_59330.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -8.00, deficit  3.57, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  5, 3, MLPS -9.81, deficit  3.60, prct   0.00; HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 2, MLPS -10.13, deficit  2.74, prct   0.00; HL_85367.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -10.84, deficit  6.10, prct   0.00; 
Group  86 is from HL_33983.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_33983.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00            CCUGAUAAG (   1) MLPS  -6.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33983.1  8WND C   31 G   39'

 scores better against   1 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 0, MLPS -4.92, deficit  0.17, prct   0.00; 
Group  88 is from HL_34964.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_34964.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GUUUUGUAAUC (   1) MLPS  -9.55 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34964.1  4YYE G   30 C   40'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AGAGGGGCUUU (   1) MLPS -10.99 deficit   1.43 prct   0.00 CutScore  91.00;  Ed  0, 0
ans =

    ' HL_34964.1  2DU3 A  912 U  922'

 matches the original group, cWW-F-F-F-F-F
Group 104 is from HL_41464.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_41464.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GUGUAAAAC (   1) MLPS  -8.03 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_41464.2  8P9A G  686 C  694'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGUAAAAC (   1) MLPS  -8.03 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_41464.2  8CRE G  684 C  692'

 matches the original group, cWW-F-F-F-F-F
Better:   3 Equal:   0 Score 0.00           GGUGAAUGAC (   1) MLPS -12.97 deficit   4.95 prct   0.00 CutScore  54.58;  Ed  0, 0
ans =

    ' HL_41464.2  6DB9 G   36 C   45'

 scores better against   3 groups: HL_36335.1,  9 NTs, cWW-F-F-cSS-cSS-F                       , Ed  5, 3, MLPS -10.78, deficit  2.87, prct   0.00; HL_53504.3, 10 NTs, cWW-tSH-F-F-F-F-F-F                     , Ed  3, 3, MLPS -11.39, deficit  2.04, prct   0.00; HL_55436.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  4, 4, MLPS -11.56, deficit  3.49, prct   0.00; 
Better:   3 Equal:   0 Score 0.00           CUGUUCGCAG (   1) MLPS -13.13 deficit   5.11 prct   0.00 CutScore  53.10;  Ed  0, 0
ans =

    ' HL_41464.2  3IGI C  305 G  314'

 scores better against   3 groups: HL_18978.1,  9 NTs, cWW-F-F-tHW-F-F-F                       , Ed  0, 0, MLPS -6.18, deficit  0.00, prct   0.00; HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 4, MLPS -11.09, deficit  4.39, prct   0.00; HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  3, 3, MLPS -11.43, deficit  5.86, prct   0.00; 
Group 119 is from HL_49941.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_49941.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CAGGUGGUUAG (   1) MLPS  -8.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49941.1  1FFY C   13 G   22'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGGUGGUUAG (   1) MLPS  -8.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_49941.1  1QU2 C   13 G   22'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCUGGUCAG (   1) MLPS  -9.54 deficit   1.47 prct   0.00 CutScore  91.90;  Ed  0, 0
ans =

    ' HL_49941.1  2CSX C   13 G   22'

 matches the original group, cWW-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00          CAGCCUGGUAG (   1) MLPS  -9.94 deficit   1.86 prct   0.00 CutScore  89.70;  Ed  0, 0
ans =

    ' HL_49941.1  6NWY C   13 G   22'

 scores better against   2 groups: HL_93616.2,  8 NTs, cWW-cWS-F-F-F-F                         , Ed  0, 0, MLPS -5.88, deficit  0.00, prct   0.00; HL_80411.1,  9 NTs, cWW-F-cSH-F-F-F-F                       , Ed  1, 1, MLPS -9.37, deficit  1.10, prct   0.00; 
Group 127 is from HL_51447.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_51447.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CGAGUCG (   1) MLPS  -5.00 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_51447.1  8KAJ C   86 G   92'

 matches the original group, cWW-F-F-F-F-F
Group 134 is from HL_55305.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_55305.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         UCUAUGAUACCA (   1) MLPS  -9.41 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_55305.1  3TS2 U    5 A   16'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         UCUAUGAUACCA (   1) MLPS  -9.41 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_55305.1  3TS2 U    5 A   16'

 matches the original group, cWW-F-F-F-F-F
Group 142 is from HL_58224.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_58224.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CAGUCGGUAG (   1) MLPS  -6.69 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_58224.1  5CCB C   13 G   22'

 matches the original group, cWW-F-F-F-F-F
Group 144 is from HL_59330.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_59330.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             UUCUGCGG (   1) MLPS  -4.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_59330.1  2W2H U   10 G   17'

 matches the original group, cWW-F-F-F-F-F
Group 146 is from HL_59735.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_59735.5
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              UGAAAUG (   1) MLPS  -5.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_59735.5  8CRE U 1019 G 1025'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00              CAAUAGG (   1) MLPS  -5.67 deficit   0.33 prct   0.00 CutScore  96.52;  Ed  0, 0
ans =

    ' HL_59735.5  4WSM C   49 G   55'

 matches the original group, cWW-F-F-F-F-F
Group 186 is from HL_77436.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_77436.5
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00             GUUAAGUC (   1) MLPS  -6.25 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_77436.5  4LFB G 1089 C 1096'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -5.86, deficit  0.43, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GUUAAGUC (   1) MLPS  -6.25 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_77436.5  5J7L G 1089 C 1096'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -5.86, deficit  0.43, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             CUUAAUUG (   1) MLPS  -6.52 deficit   0.27 prct   0.00 CutScore  97.20;  Ed  0, 0
ans =

    ' HL_77436.5  8CRE C 1294 G 1301'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CUUAAUUG (   1) MLPS  -6.52 deficit   0.27 prct   0.00 CutScore  97.20;  Ed  0, 0
ans =

    ' HL_77436.5  8P9A C 1309 G 1316'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CUUAAUUG (   1) MLPS  -6.52 deficit   0.27 prct   0.00 CutScore  97.20;  Ed  0, 0
ans =

    ' HL_77436.5  8CRE C 1072 G 1079'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CUUAAUUG (   1) MLPS  -6.52 deficit   0.27 prct   0.00 CutScore  97.20;  Ed  0, 0
ans =

    ' HL_77436.5  8P9A C 1076 G 1083'

 matches the original group, cWW-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00              CGUAAUG (   1) MLPS  -6.65 deficit   0.40 prct   0.00 CutScore  95.86;  Ed  0, 0
ans =

    ' HL_77436.5  4V9F C 1594 G 1600'

 scores better against   1 groups: HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.38, deficit  0.78, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             AUUGAGUU (   1) MLPS  -7.24 deficit   0.99 prct   0.00 CutScore  89.80;  Ed  0, 0
ans =

    ' HL_77436.5  3R4F A   24 U   31'

 matches the original group, cWW-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             GAUAAUGC (   1) MLPS  -8.15 deficit   1.90 prct   0.00 CutScore  80.43;  Ed  0, 0
ans =

    ' HL_77436.5  3K0J G   66 C   73'

 scores better against   1 groups: HL_84299.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -6.16, deficit  0.87, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GAUAAUGC (   1) MLPS  -8.15 deficit   1.90 prct   0.00 CutScore  80.43;  Ed  0, 0
ans =

    ' HL_77436.5  7TZS G   66 C   73'

 scores better against   1 groups: HL_84299.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -6.16, deficit  0.87, prct   0.00; 
Better:   4 Equal:   0 Score 0.00             GGUAAUGC (   1) MLPS  -8.44 deficit   2.19 prct   0.00 CutScore  77.41;  Ed  0, 0
ans =

    ' HL_77436.5  3D2V G   54 C   61'

 scores better against   4 groups: HL_84299.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -6.86, deficit  1.57, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  2, 1, MLPS -7.65, deficit  1.87, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.91, deficit  2.47, prct   0.00; HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -8.37, deficit  0.98, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             GAUGAUUC (   1) MLPS  -8.55 deficit   2.31 prct   0.00 CutScore  76.24;  Ed  0, 0
ans =

    ' HL_77436.5  8CRE G  241 C  248'

 matches the original group, cWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GAUGAUUC (   1) MLPS  -8.55 deficit   2.31 prct   0.00 CutScore  76.24;  Ed  0, 0
ans =

    ' HL_77436.5  8P9A G  243 C  250'

 matches the original group, cWW-F-F-F-F-F
Better:  10 Equal:   0 Score 0.00             GUUAAAAC (   1) MLPS  -8.59 deficit   2.34 prct   0.00 CutScore  75.88;  Ed  0, 0
ans =

    ' HL_77436.5  3IVK G   92 C   99'

 scores better against  10 groups: HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  0, 0, MLPS -6.40, deficit  0.61, prct   0.00; HL_00914.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.59, deficit  1.10, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.68, deficit  0.11, prct   0.00; HL_15574.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.43, deficit  2.30, prct   0.00; HL_41464.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -7.78, deficit -0.25, prct   0.00; 
Better:   6 Equal:   0 Score 0.00             CGUAAUAG (   1) MLPS  -8.81 deficit   2.57 prct   0.00 CutScore  73.58;  Ed  0, 0
ans =

    ' HL_77436.5  7A0S C 1103 G 1110'

 scores better against   6 groups: HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  0, 0, MLPS -6.93, deficit  1.14, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -7.83, deficit  0.10, prct   0.00; HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 2, MLPS -8.22, deficit  2.65, prct   0.00; HL_00914.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -8.24, deficit  2.76, prct   0.00; HL_02817.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.35, deficit  3.56, prct   0.00; 
Better:   3 Equal:   0 Score 0.00            GUUCAAGUC (   1) MLPS  -9.41 deficit   3.17 prct   0.00 CutScore  67.37;  Ed  0, 0
ans =

    ' HL_77436.5  5CCB G   53 C   61'

 scores better against   3 groups: HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  0, 0, MLPS -3.06, deficit  0.70, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  3, 3, MLPS -7.75, deficit  2.32, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -8.97, deficit  4.23, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            UUUUUGAUA (   1) MLPS -10.39 deficit   4.14 prct   0.00 CutScore  57.37;  Ed  0, 0
ans =

    ' HL_77436.5  4JYZ U  931 A  939'

 scores better against   2 groups: HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.76, deficit  4.16, prct   0.00; HL_25061.1,  5 NTs, cWW-F-F-F-F                             , Ed  4, 3, MLPS -9.93, deficit  1.20, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            AUUCUGAUU (   1) MLPS -11.20 deficit   4.96 prct   0.00 CutScore  48.95;  Ed  0, 0
ans =

    ' HL_77436.5  1QTQ A  931 U  939'

 scores better against   2 groups: HL_38808.1,  4 NTs, cWW-cWW                                 , Ed  2, 2, MLPS -9.99, deficit  1.07, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 3, MLPS -10.54, deficit  4.34, prct   0.00; 
Better:  14 Equal:   0 Score 0.00             CGUACAAG (   1) MLPS -11.23 deficit   4.98 prct   0.00 CutScore  48.68;  Ed  0, 0
ans =

    ' HL_77436.5  4V9F C 1916 G 1923'

 scores better against  14 groups: HL_00914.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -7.15, deficit  1.66, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -7.42, deficit  0.85, prct   0.00; HL_42998.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -7.53, deficit  4.80, prct   0.00; HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -7.60, deficit  1.16, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -8.34, deficit  0.61, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            CAGUAAAUG (   1) MLPS -12.63 deficit   6.39 prct   0.00 CutScore  34.24;  Ed  0, 0
ans =

    ' HL_77436.5  4WF9 C  654 G  662'

 scores better against   5 groups: HL_57863.1,  8 NTs, cWW-F-F-cWH-cWH-F                       , Ed  5, 3, MLPS -9.46, deficit  4.44, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -10.73, deficit  4.16, prct   0.00; HL_80922.2,  5 NTs, cWW-tSH-F                               , Ed  4, 2, MLPS -10.82, deficit  3.27, prct   0.00; HL_50860.2,  9 NTs, cWW-F-cWH-F-F-F-F                       , Ed  4, 3, MLPS -11.68, deficit  7.05, prct   0.00; HL_41464.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -12.27, deficit  4.24, prct   0.00; 
Better:   4 Equal:   0 Score 0.00           UUUGGGAAUG (   1) MLPS -13.43 deficit   7.19 prct   0.00 CutScore  26.00;  Ed  0, 0
ans =

    ' HL_77436.5  8P9A U  278 G  287'

 scores better against   4 groups: HL_29129.3,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  2, 1, MLPS -7.03, deficit  0.15, prct   0.00; HL_87463.1,  9 NTs, cWW-cWW-F-F-F-F-F                       , Ed  4, 2, MLPS -10.04, deficit  4.43, prct   0.00; HL_99867.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -12.04, deficit  3.45, prct   0.00; HL_55436.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -13.07, deficit  5.00, prct   0.00; 
Better:   4 Equal:   0 Score 0.00           UUUGGGAAUG (   1) MLPS -13.43 deficit   7.19 prct   0.00 CutScore  26.00;  Ed  0, 0
ans =

    ' HL_77436.5  8CRE U  278 G  287'

 scores better against   4 groups: HL_29129.3,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  2, 1, MLPS -7.03, deficit  0.15, prct   0.00; HL_87463.1,  9 NTs, cWW-cWW-F-F-F-F-F                       , Ed  4, 2, MLPS -10.04, deficit  4.43, prct   0.00; HL_99867.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -12.04, deficit  3.45, prct   0.00; HL_55436.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -13.07, deficit  5.00, prct   0.00; 
Better:  11 Equal:   0 Score 0.00            GCUUUGGAC (   1) MLPS -13.76 deficit   7.51 prct   0.00 CutScore  22.63;  Ed  0, 0
ans =

    ' HL_77436.5  2D6F G  931 C  939'

 scores better against  11 groups: HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 1, MLPS -7.38, deficit  1.18, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -9.10, deficit  3.51, prct   0.00; HL_50537.6,  5 NTs, cWW-F-F-F                               , Ed  3, 3, MLPS -9.36, deficit  1.27, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 2, MLPS -9.42, deficit  4.67, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -10.17, deficit  4.59, prct   0.00; 
Group 187 is from HL_77600.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_77600.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00            GAACCAUCC (   1) MLPS  -9.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_77600.2  7JRR G   12 C   20'

 scores better against   1 groups: HL_38808.1,  4 NTs, cWW-cWW                                 , Ed  6, 4, MLPS -9.71, deficit  0.79, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            UGUAAGUAA (   1) MLPS  -9.80 deficit   0.06 prct   0.00 CutScore  99.43;  Ed  0, 0
ans =

    ' HL_77600.2  4WF9 U   87 A   95'

 scores better against   2 groups: HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -6.21, deficit  0.64, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  2, 1, MLPS -9.03, deficit  3.24, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           GGUAAAUUCC (   1) MLPS -10.48 deficit   0.74 prct   0.00 CutScore  92.80;  Ed  0, 0
ans =

    ' HL_77600.2  8CRE G  303 C  312'

 scores better against   1 groups: HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -10.47, deficit  4.90, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           GGUAAAUUCC (   1) MLPS -10.48 deficit   0.74 prct   0.00 CutScore  92.80;  Ed  0, 0
ans =

    ' HL_77600.2  8P9A G  303 C  312'

 scores better against   1 groups: HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -10.47, deficit  4.90, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            GGAUGGUUC (   1) MLPS -11.28 deficit   1.54 prct   0.00 CutScore  84.97;  Ed  0, 0
ans =

    ' HL_77600.2  7JRR G   39 C   47'

 scores better against   2 groups: HL_22622.1,  6 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -9.13, deficit  1.66, prct   0.00; HL_08510.1,  8 NTs, cWW-F-F-cSH-F-F                         , Ed  5, 3, MLPS -10.84, deficit  5.51, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           GAUGAGGCCC (   1) MLPS -11.92 deficit   2.17 prct   0.00 CutScore  78.75;  Ed  0, 0
ans =

    ' HL_77600.2  4ENC G    5 C   14'

 scores better against   1 groups: HL_04641.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -11.12, deficit  4.67, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CGGUAGCGG (   1) MLPS -12.23 deficit   2.49 prct   0.00 CutScore  75.67;  Ed  0, 0
ans =

    ' HL_77600.2  9DFE C   87 G   95'

 scores better against   2 groups: HL_80241.1,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  5, 3, MLPS -9.68, deficit  2.84, prct   0.00; HL_35677.3,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  4, 4, MLPS -10.09, deficit  2.71, prct   0.00; 
Better:   0 Equal:   0 Score 1.00           UACUCCUUCG (   1) MLPS -12.55 deficit   2.80 prct   0.00 CutScore  72.59;  Ed  0, 0
ans =

    ' HL_77600.2  4QLM U   72 G   81'

 matches the original group, cWW-F-F-F-F-F
Better:   7 Equal:   0 Score 0.00            ACUGCAGAU (   1) MLPS -13.40 deficit   3.65 prct   0.00 CutScore  64.25;  Ed  0, 0
ans =

    ' HL_77600.2  5X6B A   30 U   38'

 scores better against   7 groups: HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  0, 0, MLPS -5.70, deficit  0.53, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.91, deficit  0.34, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -7.10, deficit  2.35, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 3, MLPS -9.50, deficit  3.30, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -9.96, deficit  3.39, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           UCAAGCCUAG (   1) MLPS -13.47 deficit   3.72 prct   0.00 CutScore  63.59;  Ed  0, 0
ans =

    ' HL_77600.2  7KGA U   22 G   31'

 scores better against   1 groups: HL_74292.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -12.60, deficit  5.53, prct   0.00; 
Group 212 is from HL_85993.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_85993.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             AGGCAAUU (   1) MLPS  -5.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85993.1  1S03 A   22 U   29'

 matches the original group, cWW-F-F-F-F-F
Group 219 is from HL_87553.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_87553.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GCGCCAGC (   1) MLPS  -8.73 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_87553.1  5H9F G   50 C   57'

 matches the original group, cWW-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00             CCCACCAG (   1) MLPS  -9.30 deficit   0.57 prct   0.00 CutScore  93.98;  Ed  0, 0
ans =

    ' HL_87553.1  9DFE C  884 G  892'

 scores better against   2 groups: HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -7.15, deficit  0.57, prct   0.00; HL_77082.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -8.86, deficit  1.35, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GCGAAAGAC (   1) MLPS  -9.31 deficit   0.59 prct   0.00 CutScore  93.81;  Ed  0, 0
ans =

    ' HL_87553.1  8P9A G  910 C  918'

 scores better against   1 groups: HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  4, 3, MLPS -7.23, deficit  2.44, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GCGAAAGAC (   1) MLPS  -9.31 deficit   0.59 prct   0.00 CutScore  93.81;  Ed  0, 0
ans =

    ' HL_87553.1  8CRE G  906 C  914'

 scores better against   1 groups: HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  4, 3, MLPS -7.23, deficit  2.44, prct   0.00; 
Better:   4 Equal:   0 Score 0.00              UCAUCGA (   1) MLPS  -9.99 deficit   1.26 prct   0.00 CutScore  86.75;  Ed  0, 0
ans =

    ' HL_87553.1  4WZD U   47 A   53'

 scores better against   4 groups: HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -7.03, deficit  0.54, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.32, deficit  2.98, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -8.92, deficit  3.17, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.96, deficit  4.36, prct   0.00; 
Better:   5 Equal:   0 Score 0.00             ACUUCGGU (   1) MLPS -10.27 deficit   1.55 prct   0.00 CutScore  83.72;  Ed  0, 0
ans =

    ' HL_87553.1  6CF2 A   13 U   20'

 scores better against   5 groups: HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  5, 3, MLPS -6.31, deficit  1.67, prct   0.00; HL_27483.1,  4 NTs, cWW-F                                   , Ed  3, 1, MLPS -8.18, deficit  3.99, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -8.24, deficit  1.76, prct   0.00; HL_09452.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -9.38, deficit  0.67, prct   0.00; HL_93324.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -10.12, deficit  2.73, prct   0.00; 
Better:  11 Equal:   0 Score 0.00            UCUCAUAAG (   1) MLPS -12.59 deficit   3.86 prct   0.00 CutScore  59.33;  Ed  0, 0
ans =

    ' HL_87553.1  2CSX U   31 G   39'

 scores better against  11 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 0, MLPS -7.14, deficit  2.39, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 1, MLPS -9.77, deficit  3.20, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -9.91, deficit  1.65, prct   0.00; HL_80599.2,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  4, 3, MLPS -10.81, deficit  5.51, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -10.92, deficit  5.34, prct   0.00; 
Group  11 is from HL_04259.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_04259.3
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CCUACAAG (   1) MLPS  -6.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04259.3  4WF9 C 2382 G 2389'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             UUGAAAAA (   1) MLPS  -6.73 deficit   0.16 prct   0.00 CutScore  98.36;  Ed  0, 0
ans =

    ' HL_04259.3  7QR8 U   71 A   78'

 scores better against   1 groups: HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  2, 1, MLPS -6.39, deficit  1.63, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             CCUGCAAG (   1) MLPS  -7.16 deficit   0.59 prct   0.00 CutScore  93.81;  Ed  0, 0
ans =

    ' HL_04259.3  9DFE C 2355 G 2362'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CUGACACG (   1) MLPS  -7.54 deficit   0.97 prct   0.00 CutScore  89.80;  Ed  0, 0
ans =

    ' HL_04259.3  7A0S C 2334 G 2341'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             UAGAAAUA (   1) MLPS  -8.34 deficit   1.76 prct   0.00 CutScore  81.42;  Ed  0, 0
ans =

    ' HL_04259.3  8KAL U   31 A   38'

 scores better against   1 groups: HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.63, deficit  2.28, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GGGGAACC (   1) MLPS  -8.41 deficit   1.84 prct   0.00 CutScore  80.65;  Ed  0, 0
ans =

    ' HL_04259.3  3R9X G 1514 C 1521'

 scores better against   1 groups: HL_85993.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.63, deficit  2.28, prct   0.00; 
Better:   6 Equal:   0 Score 0.00            GCUUCAAAC (   1) MLPS  -9.89 deficit   3.31 prct   0.00 CutScore  65.13;  Ed  0, 0
ans =

    ' HL_04259.3  3RG5 G   31 C   39'

 scores better against   6 groups: HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  2, 1, MLPS -5.95, deficit  1.16, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 0, MLPS -6.95, deficit  2.21, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -7.72, deficit  2.14, prct   0.00; HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.28, deficit  2.69, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  4, 2, MLPS -9.05, deficit  3.88, prct   0.00; 
Group  43 is from HL_16398.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_16398.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        GAAGAAUACGACC (   1) MLPS -12.15 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_16398.2  8SYK G   57 C   69'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        GAAGAAUACGACC (   1) MLPS -12.15 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_16398.2  3EGZ G   12 C   24'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00       GACCUAGAUCACCC (   1) MLPS -15.04 deficit   2.89 prct   0.00 CutScore  83.04;  Ed  0, 0
ans =

    ' HL_16398.2  1EC6 G    4 C   17'

 scores better against   1 groups: HL_78284.1, 10 NTs, cWW-F-F-F-F-F-F-F-F-F-F                 , Ed  0, 0, MLPS -13.58, deficit  2.84, prct   0.00; 
Group  49 is from HL_20167.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_20167.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GGUAAGUUC (   1) MLPS  -5.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20167.2  7A0S G 1932 C 1940'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGUAAGUUC (   1) MLPS  -5.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20167.2  9DFE G 1949 C 1957'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGUAAGUUC (   1) MLPS  -5.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20167.2  4WF9 G 1976 C 1984'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGUAAGUUC (   1) MLPS  -5.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20167.2  5J7L G 1949 C 1957'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            UCUAAUUAG (   1) MLPS  -8.47 deficit   2.90 prct   0.00 CutScore  78.38;  Ed  0, 0
ans =

    ' HL_20167.2  8CRE U 2270 G 2278'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            UCUAAUUAG (   1) MLPS  -8.47 deficit   2.90 prct   0.00 CutScore  78.38;  Ed  0, 0
ans =

    ' HL_20167.2  8P9A U 2292 G 2300'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CAUCAGUAG (   1) MLPS  -8.71 deficit   3.14 prct   0.00 CutScore  76.63;  Ed  0, 0
ans =

    ' HL_20167.2  4V9F C 1990 G 1998'

 matches the original group, cWW-F-F-F-F-F-F
Better:   3 Equal:   0 Score 0.00            GGUAAGAGC (   1) MLPS  -9.74 deficit   4.17 prct   0.00 CutScore  68.94;  Ed  0, 0
ans =

    ' HL_20167.2  1U9S G  181 C  189'

 scores better against   3 groups: HL_93383.1,  9 NTs, cWW-cSH-F-F-F-F-F-F                     , Ed  3, 3, MLPS -8.30, deficit  4.83, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  2, 2, MLPS -8.66, deficit  2.88, prct   0.00; HL_20743.5,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  3, 3, MLPS -9.42, deficit  4.05, prct   0.00; 
Better:   6 Equal:   0 Score 0.00            AUGAGAAUU (   1) MLPS -12.04 deficit   6.47 prct   0.00 CutScore  51.88;  Ed  0, 0
ans =

    ' HL_20167.2  4WF9 A 1673 U 1681'

 scores better against   6 groups: HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  3, 1, MLPS -7.45, deficit  2.69, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 0, MLPS -8.49, deficit  3.06, prct   0.00; HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  1, 0, MLPS -9.32, deficit  6.96, prct   0.00; HL_08510.1,  8 NTs, cWW-F-F-cSH-F-F                         , Ed  3, 3, MLPS -10.84, deficit  5.51, prct   0.00; HL_61996.2,  7 NTs, cWW-tWH-F-F-F                           , Ed  4, 2, MLPS -11.19, deficit  5.38, prct   0.00; 
Better:  14 Equal:   0 Score 0.00            GUUCGAAUC (   1) MLPS -12.98 deficit   7.41 prct   0.00 CutScore  44.84;  Ed  0, 0
ans =

    ' HL_20167.2  3CUL G   69 C   77'

 scores better against  14 groups: HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  0, 0, MLPS -2.36, deficit  0.00, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  2, 2, MLPS -8.07, deficit  4.98, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -8.56, deficit  3.13, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 2, MLPS -8.82, deficit  4.07, prct   0.00; HL_87463.1,  9 NTs, cWW-cWW-F-F-F-F-F                       , Ed  2, 2, MLPS -9.01, deficit  3.40, prct   0.00; 
Group  60 is from HL_23010.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_23010.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CAAGCGGUAAG (   1) MLPS  -7.81 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_23010.1  4V7M C   12 G   22'

 matches the original group, cWW-F-F-F-F-F-F
Group  68 is from HL_26934.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_26934.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GUGUCUAC (   1) MLPS  -3.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_26934.1  3IVN G   37 C   44'

 matches the original group, cWW-F-F-F-F-F-F
Group  97 is from HL_38046.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_38046.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            AAAAUCACU (   1) MLPS  -6.50 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38046.1  7A0S A 2188 U 2196'

 matches the original group, cWW-F-F-F-F-F-F
Group 108 is from HL_42998.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_42998.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GGAACAAC (   1) MLPS  -2.73 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_42998.2  9DFE G  978 C  985'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGAACAAC (   1) MLPS  -2.73 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_42998.2  4V9F G 1076 C 1083'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GAAACAAC (   1) MLPS  -2.98 deficit   0.25 prct   0.00 CutScore  97.98;  Ed  0, 0
ans =

    ' HL_42998.2  5J7L G  978 C  985'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GAAACAAC (   1) MLPS  -2.98 deficit   0.25 prct   0.00 CutScore  97.98;  Ed  0, 0
ans =

    ' HL_42998.2  7A0S G  989 C  996'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGAUGAAC (   1) MLPS  -4.42 deficit   1.68 prct   0.00 CutScore  86.49;  Ed  0, 0
ans =

    ' HL_42998.2  8CRE G 1144 C 1151'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGAUGAAC (   1) MLPS  -4.42 deficit   1.68 prct   0.00 CutScore  86.49;  Ed  0, 0
ans =

    ' HL_42998.2  8P9A G 1148 C 1155'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GAAACAGC (   1) MLPS  -4.45 deficit   1.72 prct   0.00 CutScore  86.21;  Ed  0, 0
ans =

    ' HL_42998.2  4WF9 G 1022 C 1029'

 matches the original group, cWW-F-F-F-F-F-F
Group 113 is from HL_47732.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_47732.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         CAAAAUAACAAG (   1) MLPS  -6.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47732.1  4Z7K C   17 G   28'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAAAAUAACAAG (   1) MLPS  -6.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_47732.1  4Z7L C   17 G   28'

 matches the original group, cWW-F-F-F-F-F-F
Group 176 is from HL_73255.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_73255.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CAGCACUUUG (   1) MLPS  -7.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73255.1  5AOX C   32 G   41'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           CAGCUACUCG (   1) MLPS -10.01 deficit   2.27 prct   0.00 CutScore  85.12;  Ed  0, 0
ans =

    ' HL_73255.1  1E8O C  131 G  140'

 matches the original group, cWW-F-F-F-F-F-F
Group 185 is from HL_77082.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_77082.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00             CCGAAAAG (   1) MLPS  -7.51 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_77082.1  9DE7 C   29 G   36'

 scores better against   2 groups: HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.34, deficit -0.23, prct   0.00; HL_02817.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.25, deficit  2.46, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             GCCAUCAC (   1) MLPS  -7.94 deficit   0.43 prct   0.00 CutScore  96.10;  Ed  0, 0
ans =

    ' HL_77082.1  6UFM G   13 C   20'

 matches the original group, cWW-F-F-F-F-F-F
Better:   3 Equal:   0 Score 0.00            ACUCUAAAU (   1) MLPS  -8.06 deficit   0.55 prct   0.00 CutScore  95.07;  Ed  0, 0
ans =

    ' HL_77082.1  5UD5 A   31 U   39'

 scores better against   3 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -5.58, deficit  0.00, prct   0.00; HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  1, 1, MLPS -5.82, deficit  1.03, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -6.43, deficit  1.68, prct   0.00; 
Better:   6 Equal:   0 Score 0.00            UCUGUAAAA (   1) MLPS  -8.70 deficit   1.19 prct   0.00 CutScore  89.32;  Ed  0, 0
ans =

    ' HL_77082.1  1H3E U   31 A   39'

 scores better against   6 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -5.19, deficit -0.39, prct   0.00; HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  1, 0, MLPS -5.67, deficit  0.88, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 0, MLPS -6.80, deficit  2.05, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  4, 2, MLPS -7.74, deficit  2.57, prct   0.00; HL_50537.6,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -8.15, deficit  0.06, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            ACUCAUACU (   1) MLPS  -9.98 deficit   2.47 prct   0.00 CutScore  77.79;  Ed  0, 0
ans =

    ' HL_77082.1  4V9F A 1274 U 1282'

 scores better against   5 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -7.54, deficit  2.79, prct   0.00; HL_80362.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -8.26, deficit  1.19, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.86, deficit  2.29, prct   0.00; HL_72628.1,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  5, 3, MLPS -8.91, deficit  3.29, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -9.92, deficit  4.34, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUAUCUUU (   1) MLPS -10.45 deficit   2.94 prct   0.00 CutScore  73.57;  Ed  0, 0
ans =

    ' HL_77082.1  8P9A G 1680 U 1688'

 scores better against   1 groups: HL_08510.1,  8 NTs, cWW-F-F-cSH-F-F                         , Ed  4, 3, MLPS -10.20, deficit  4.86, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUAUCUUU (   1) MLPS -10.45 deficit   2.94 prct   0.00 CutScore  73.57;  Ed  0, 0
ans =

    ' HL_77082.1  8CRE G 1676 U 1684'

 scores better against   1 groups: HL_08510.1,  8 NTs, cWW-F-F-cSH-F-F                         , Ed  4, 3, MLPS -10.20, deficit  4.86, prct   0.00; 
Better:   9 Equal:   0 Score 0.00             GUUUCGAC (   1) MLPS -11.94 deficit   4.43 prct   0.00 CutScore  60.18;  Ed  0, 0
ans =

    ' HL_77082.1  7PMQ G    8 C   15'

 scores better against   9 groups: HL_26934.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -6.80, deficit  3.04, prct   0.00; HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -7.08, deficit  0.64, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -8.32, deficit  1.83, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  2, 2, MLPS -8.41, deficit  1.98, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -8.58, deficit  0.85, prct   0.00; 
Group 188 is from HL_78197.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_78197.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GGUUGGCC (   1) MLPS  -7.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_78197.1  6UFG G   69 C   76'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGUGAGCC (   1) MLPS  -7.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_78197.1  6UFM G   80 C   87'

 matches the original group, cWW-F-F-F-F-F-F
Better:   4 Equal:   0 Score 0.00             GCGAUCAC (   1) MLPS  -9.94 deficit   2.21 prct   0.00 CutScore  78.71;  Ed  0, 0
ans =

    ' HL_78197.1  6UFG G   13 C   20'

 scores better against   4 groups: HL_77082.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -7.94, deficit  0.43, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  3, 3, MLPS -9.07, deficit  2.65, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -9.20, deficit  0.47, prct   0.00; HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  5, 3, MLPS -9.29, deficit  2.59, prct   0.00; 
Better:   2 Equal:   0 Score 0.00             UUAUCUUA (   1) MLPS -10.56 deficit   2.82 prct   0.00 CutScore  72.73;  Ed  0, 0
ans =

    ' HL_78197.1  9BZC U   54 A   61'

 scores better against   2 groups: HL_26934.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -7.99, deficit  4.23, prct   0.00; HL_28075.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -9.77, deficit  1.95, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           CGUUGAAAAG (   1) MLPS -11.18 deficit   3.44 prct   0.00 CutScore  66.77;  Ed  0, 0
ans =

    ' HL_78197.1  5ZQ8 C  744 G  753'

 scores better against   2 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  0, 0, MLPS -6.10, deficit  0.38, prct   0.00; HL_75293.5, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  2, 2, MLPS -9.70, deficit  1.39, prct   0.00; 
Group 205 is from HL_83632.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_83632.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            ACUGUAGAU (   1) MLPS  -5.58 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_83632.1  1J1U A  532 U  540'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUCUAAAU (   1) MLPS  -5.58 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_83632.1  2ZNI A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            ACUGAAAAU (   1) MLPS  -5.84 deficit   0.26 prct   0.00 CutScore  98.18;  Ed  0, 0
ans =

    ' HL_83632.1  2IY5 A   31 U   39'

 scores better against   1 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  0, 0, MLPS -4.81, deficit  0.06, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            ACUCCAGAU (   1) MLPS  -6.50 deficit   0.92 prct   0.00 CutScore  93.51;  Ed  0, 0
ans =

    ' HL_83632.1  2AKE A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CCUGUCACG (   1) MLPS  -6.98 deficit   1.40 prct   0.00 CutScore  90.17;  Ed  0, 0
ans =

    ' HL_83632.1  6UGG C   31 G   39'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            CUUGCCAAG (   1) MLPS  -7.31 deficit   1.74 prct   0.00 CutScore  87.81;  Ed  0, 0
ans =

    ' HL_83632.1  4LCK C   30 G   38'

 scores better against   1 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  1, 1, MLPS -6.66, deficit  0.16, prct   0.00; 
Group 207 is from HL_84299.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_84299.4
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GAUAAAAGC (   1) MLPS  -5.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_84299.4  5T83 G   77 C   85'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAUAAAAGC (   1) MLPS  -5.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_84299.4  7MLW G  112 C  120'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAUAGUGGC (   1) MLPS  -5.31 deficit   0.02 prct   0.00 CutScore  99.88;  Ed  0, 0
ans =

    ' HL_84299.4  8P9A G  330 C  338'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAUAGUGGC (   1) MLPS  -5.31 deficit   0.02 prct   0.00 CutScore  99.88;  Ed  0, 0
ans =

    ' HL_84299.4  8CRE G  328 C  336'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAUAGAAGC (   1) MLPS  -5.49 deficit   0.20 prct   0.00 CutScore  98.57;  Ed  0, 0
ans =

    ' HL_84299.4  6DLR G   82 C   90'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGUAAUGGC (   1) MLPS  -5.81 deficit   0.52 prct   0.00 CutScore  96.32;  Ed  0, 0
ans =

    ' HL_84299.4  4LFB G  259 C  267'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGUAACGGC (   1) MLPS  -6.39 deficit   1.10 prct   0.00 CutScore  92.13;  Ed  0, 0
ans =

    ' HL_84299.4  5J7L G  259 C  267'

 matches the original group, cWW-F-F-F-F-F-F
Better:   4 Equal:   0 Score 0.00            GGUAAGUUC (   1) MLPS  -9.91 deficit   4.62 prct   0.00 CutScore  67.06;  Ed  0, 0
ans =

    ' HL_84299.4  2BH2 G 1949 C 1957'

 scores better against   4 groups: HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -5.57, deficit  0.00, prct   0.00; HL_97983.1,  4 NTs, cWW-F-F                                 , Ed  5, 3, MLPS -9.12, deficit  0.93, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  3, 2, MLPS -9.36, deficit  3.58, prct   0.00; HL_77436.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.85, deficit  3.61, prct   0.00; 
Better:   7 Equal:   0 Score 0.00            GUUGACUAC (   1) MLPS -12.91 deficit   7.62 prct   0.00 CutScore  45.63;  Ed  0, 0
ans =

    ' HL_84299.4  4R4V G  689 C  697'

 scores better against   7 groups: HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  3, 3, MLPS -8.65, deficit  2.23, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 2, MLPS -9.88, deficit  5.13, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -9.94, deficit  3.37, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -10.12, deficit  4.54, prct   0.00; HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  5, 3, MLPS -10.40, deficit  3.90, prct   0.00; 
Group 209 is from HL_85367.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_85367.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  4WF9 C 2275 G 2283'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  5J7L C 2248 G 2256'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  8P9A C 2616 G 2624'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  7A0S C 2227 G 2235'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  8CRE C 2588 G 2596'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  9DFE C 2248 G 2256'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUGGGGCGG (   1) MLPS  -4.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85367.2  4V9F C 2281 G 2289'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             UUAGGUAG (   1) MLPS  -8.41 deficit   3.66 prct   0.00 CutScore  74.29;  Ed  0, 0
ans =

    ' HL_85367.2  4V84 U 6185 G 6192'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             UUAAGUGG (   1) MLPS  -9.25 deficit   4.51 prct   0.00 CutScore  68.34;  Ed  0, 0
ans =

    ' HL_85367.2  4V83 U 6161 G 6168'

 scores better against   1 groups: HL_59330.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 3, MLPS -9.03, deficit  4.60, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            UGUUCAAAG (   1) MLPS -12.92 deficit   8.18 prct   0.00 CutScore  42.61;  Ed  0, 0
ans =

    ' HL_85367.2  8CRE U  749 G  757'

 scores better against   5 groups: HL_32735.2,  9 NTs, cWW-tSH-F-F-F-F-F                       , Ed  2, 1, MLPS -9.20, deficit  5.56, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  5, 3, MLPS -10.20, deficit  1.94, prct   0.00; HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  3, 2, MLPS -11.49, deficit  5.00, prct   0.00; HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  3, 2, MLPS -11.57, deficit  6.78, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -12.63, deficit  6.05, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            UGUUCAAAG (   1) MLPS -12.92 deficit   8.18 prct   0.00 CutScore  42.61;  Ed  0, 0
ans =

    ' HL_85367.2  8P9A U  764 G  772'

 scores better against   5 groups: HL_32735.2,  9 NTs, cWW-tSH-F-F-F-F-F                       , Ed  2, 1, MLPS -9.20, deficit  5.56, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  5, 3, MLPS -10.20, deficit  1.94, prct   0.00; HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  3, 2, MLPS -11.49, deficit  5.00, prct   0.00; HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  3, 2, MLPS -11.57, deficit  6.78, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -12.63, deficit  6.05, prct   0.00; 
Group 234 is from HL_93135.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_93135.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CUAUGGCUAUG (   1) MLPS  -8.53 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93135.1  7A0S C 1466 G 1476'

 matches the original group, cWW-F-F-F-F-F-F
Group 235 is from HL_93324.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_93324.4
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CGCAAGGG (   1) MLPS  -7.39 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93324.4  9DFE C 2324 G 2331'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             UGCAAUGG (   1) MLPS  -8.33 deficit   0.95 prct   0.00 CutScore  90.03;  Ed  0, 0
ans =

    ' HL_93324.4  5J7L U 2324 G 2331'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CGCAAAGG (   1) MLPS  -8.39 deficit   1.00 prct   0.00 CutScore  89.49;  Ed  0, 0
ans =

    ' HL_93324.4  7A0S C 2303 G 2310'

 matches the original group, cWW-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00             CAAAAGGG (   1) MLPS  -8.39 deficit   1.01 prct   0.00 CutScore  89.41;  Ed  0, 0
ans =

    ' HL_93324.4  8CRE C 2665 G 2672'

 scores better against   1 groups: HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.26, deficit  1.82, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             CAAAAGGG (   1) MLPS  -8.39 deficit   1.01 prct   0.00 CutScore  89.41;  Ed  0, 0
ans =

    ' HL_93324.4  8P9A C 2693 G 2700'

 scores better against   1 groups: HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.26, deficit  1.82, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             UGCAAGAG (   1) MLPS  -8.52 deficit   1.13 prct   0.00 CutScore  88.09;  Ed  0, 0
ans =

    ' HL_93324.4  4V9F U 2358 G 2365'

 matches the original group, cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUUAGGGC (   1) MLPS  -8.64 deficit   1.25 prct   0.00 CutScore  86.86;  Ed  0, 0
ans =

    ' HL_93324.4  5K7D G    5 C   12'

 matches the original group, cWW-F-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00             UGUAAAGG (   1) MLPS  -9.21 deficit   1.83 prct   0.00 CutScore  80.77;  Ed  0, 0
ans =

    ' HL_93324.4  4WF9 U 2351 G 2358'

 scores better against   2 groups: HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  3, 2, MLPS -8.93, deficit  3.14, prct   0.00; HL_07886.3,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -9.20, deficit  3.77, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GACCCCGC (   1) MLPS  -9.71 deficit   2.32 prct   0.00 CutScore  75.55;  Ed  0, 0
ans =

    ' HL_93324.4  3SKI G   53 C   60'

 scores better against   1 groups: HL_30680.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.67, deficit  3.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             GACCCCGC (   1) MLPS  -9.71 deficit   2.32 prct   0.00 CutScore  75.55;  Ed  0, 0
ans =

    ' HL_93324.4  3SKL G   52 C   59'

 scores better against   1 groups: HL_30680.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.67, deficit  3.20, prct   0.00; 
Better:   0 Equal:   0 Score 1.00             GUUCGGGC (   1) MLPS  -9.74 deficit   2.35 prct   0.00 CutScore  75.29;  Ed  0, 0
ans =

    ' HL_93324.4  6R47 G    6 C   13'

 matches the original group, cWW-F-F-F-F-F-F
Better:   8 Equal:   0 Score 0.00             GUUUGAGC (   1) MLPS -10.53 deficit   3.14 prct   0.00 CutScore  66.89;  Ed  0, 0
ans =

    ' HL_93324.4  6UFJ G    5 C   12'

 scores better against   8 groups: HL_50318.1,  6 NTs, cWW-cSH-F-F                             , Ed  5, 3, MLPS -8.43, deficit  2.42, prct   0.00; HL_97917.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 3, MLPS -8.85, deficit  0.45, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -9.02, deficit  2.54, prct   0.00; HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.11, deficit  2.67, prct   0.00; HL_77436.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -9.91, deficit  3.66, prct   0.00; 
Better:   1 Equal:   0 Score 0.00             UUACUUGA (   1) MLPS -10.66 deficit   3.27 prct   0.00 CutScore  65.61;  Ed  0, 0
ans =

    ' HL_93324.4  4FRN U   44 A   51'

 scores better against   1 groups: HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  5, 3, MLPS -9.29, deficit  2.59, prct   0.00; 
Better:   6 Equal:   0 Score 0.00            GUUCAUCAC (   1) MLPS -11.03 deficit   3.65 prct   0.00 CutScore  61.62;  Ed  0, 0
ans =

    ' HL_93324.4  2NZ4 G   71 C   79'

 scores better against   6 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  5, 3, MLPS -9.02, deficit  2.53, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 2, MLPS -9.54, deficit  4.80, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -9.94, deficit  3.37, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  3, 3, MLPS -10.20, deficit  3.77, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -10.37, deficit  2.12, prct   0.00; 
Better:   7 Equal:   0 Score 0.00             CCUGGGAG (   1) MLPS -11.21 deficit   3.83 prct   0.00 CutScore  59.72;  Ed  0, 0
ans =

    ' HL_93324.4  2JLT C    5 G   12'

 scores better against   7 groups: HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  3, 3, MLPS -9.15, deficit  2.44, prct   0.00; HL_37344.1,  6 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -9.30, deficit  2.81, prct   0.00; HL_09452.1,  5 NTs, cWW-F-F-F                               , Ed  5, 3, MLPS -9.38, deficit  0.66, prct   0.00; HL_81538.2,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  4, 2, MLPS -9.83, deficit  4.04, prct   0.00; HL_56131.2,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -10.30, deficit  3.09, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            CGGAAUUUG (   1) MLPS -12.01 deficit   4.62 prct   0.00 CutScore  51.37;  Ed  0, 0
ans =

    ' HL_93324.4  8P9A C 2776 G 2784'

 scores better against   5 groups: HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -9.00, deficit  3.42, prct   0.00; HL_97983.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -9.13, deficit  0.94, prct   0.00; HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  4, 2, MLPS -9.29, deficit  4.53, prct   0.00; HL_77600.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 3, MLPS -10.80, deficit  1.05, prct   0.00; HL_73255.1,  6 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -11.36, deficit  3.62, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            CGGAAUUUG (   1) MLPS -12.01 deficit   4.62 prct   0.00 CutScore  51.37;  Ed  0, 0
ans =

    ' HL_93324.4  8CRE C 2748 G 2756'

 scores better against   5 groups: HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -9.00, deficit  3.42, prct   0.00; HL_97983.1,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -9.13, deficit  0.94, prct   0.00; HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  4, 2, MLPS -9.29, deficit  4.53, prct   0.00; HL_77600.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 3, MLPS -10.80, deficit  1.05, prct   0.00; HL_73255.1,  6 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -11.36, deficit  3.62, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GGCAUCGAC (   1) MLPS -12.18 deficit   4.79 prct   0.00 CutScore  49.54;  Ed  0, 0
ans =

    ' HL_93324.4  4V9F G  416 C  424'

 scores better against   1 groups: HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  5, 3, MLPS -12.15, deficit  6.58, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CGCACGGAG (   1) MLPS -12.38 deficit   4.99 prct   0.00 CutScore  47.49;  Ed  0, 0
ans =

    ' HL_93324.4  4V9F C   83 G   91'

 scores better against   1 groups: HL_32735.2,  9 NTs, cWW-tSH-F-F-F-F-F                       , Ed  4, 2, MLPS -11.57, deficit  7.94, prct   0.00; 
Better:   4 Equal:   0 Score 0.00            GCUUGAUGC (   1) MLPS -12.52 deficit   5.13 prct   0.00 CutScore  46.01;  Ed  0, 0
ans =

    ' HL_93324.4  4V9F G 2442 C 2450'

 scores better against   4 groups: HL_20535.2,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -10.40, deficit -0.00, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  3, 3, MLPS -10.42, deficit  7.32, prct   0.00; HL_93383.1,  9 NTs, cWW-cSH-F-F-F-F-F-F                     , Ed  3, 3, MLPS -10.81, deficit  7.34, prct   0.00; HL_09452.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -10.82, deficit  2.10, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            UUCCUCCCG (   1) MLPS -13.45 deficit   6.06 prct   0.00 CutScore  36.20;  Ed  0, 0
ans =

    ' HL_93324.4  3D0U U   90 G   98'

 scores better against   2 groups: HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  2, 1, MLPS -10.88, deficit  5.31, prct   0.00; HL_35677.3,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 3, MLPS -12.92, deficit  5.54, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            UUCCUCCCG (   1) MLPS -13.45 deficit   6.06 prct   0.00 CutScore  36.20;  Ed  0, 0
ans =

    ' HL_93324.4  3DIL U   93 G  101'

 scores better against   2 groups: HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  2, 1, MLPS -10.88, deficit  5.31, prct   0.00; HL_35677.3,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 3, MLPS -12.92, deficit  5.54, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            UACCUUCUG (   1) MLPS -13.96 deficit   6.57 prct   0.00 CutScore  30.83;  Ed  0, 0
ans =

    ' HL_93324.4  6N5P U   76 G   84'

 scores better against   2 groups: HL_35677.3,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  4, 3, MLPS -12.55, deficit  5.17, prct   0.00; HL_73255.1,  6 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 3, MLPS -12.82, deficit  5.08, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           UGCAUAACAA (   1) MLPS -14.70 deficit   7.31 prct   0.00 CutScore  23.08;  Ed  0, 0
ans =

    ' HL_93324.4  3IGI U  178 A  187'

 scores better against   2 groups: HL_85434.1, 10 NTs, cWW-cWW-F-F-F-F-F-F                     , Ed  5, 3, MLPS -11.17, deficit  5.59, prct   0.00; HL_18423.1,  7 NTs, cWW-tSH-tHS-F                           , Ed  5, 4, MLPS -13.17, deficit  3.87, prct   0.00; 
Group  17 is from HL_06059.6 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_06059.6
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GCUGAUAAC (   1) MLPS  -4.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_06059.6  6UFG G   32 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUGAUAAC (   1) MLPS  -4.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_06059.6  6UFM G   32 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUGAUAAC (   1) MLPS  -4.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_06059.6  6UFH G   32 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUGAAAAU (   1) MLPS  -4.81 deficit   0.06 prct   0.00 CutScore  99.54;  Ed  0, 0
ans =

    ' HL_06059.6  3TUP A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUGAAAAU (   1) MLPS  -4.81 deficit   0.06 prct   0.00 CutScore  99.54;  Ed  0, 0
ans =

    ' HL_06059.6  3WFS A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  6CFJ G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  9DFC G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  4TUE G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  5E81 G   32 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  4V9Q G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  4V50 G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAUAAC (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.66;  Ed  0, 0
ans =

    ' HL_06059.6  4WT8 G   32 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUCAUAAU (   1) MLPS  -4.93 deficit   0.18 prct   0.00 CutScore  98.64;  Ed  0, 0
ans =

    ' HL_06059.6  4V9K A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CCUGAAAAG (   1) MLPS  -4.98 deficit   0.23 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_06059.6  7K98 C   32 G   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CCUGGAAAG (   1) MLPS  -6.16 deficit   1.41 prct   0.00 CutScore  89.43;  Ed  0, 0
ans =

    ' HL_06059.6  1N33 C   31 G   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AUUGAAAAU (   1) MLPS  -6.16 deficit   1.41 prct   0.00 CutScore  89.42;  Ed  0, 0
ans =

    ' HL_06059.6  6CAQ A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AUUGAAAAU (   1) MLPS  -6.16 deficit   1.41 prct   0.00 CutScore  89.42;  Ed  0, 0
ans =

    ' HL_06059.6  4YCO A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AUUGAAAAU (   1) MLPS  -6.16 deficit   1.41 prct   0.00 CutScore  89.42;  Ed  0, 0
ans =

    ' HL_06059.6  4B3M A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AUUGAAAAU (   1) MLPS  -6.16 deficit   1.41 prct   0.00 CutScore  89.42;  Ed  0, 0
ans =

    ' HL_06059.6  4V90 A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00            ACUGUAAAU (   1) MLPS  -6.25 deficit   1.50 prct   0.00 CutScore  88.70;  Ed  0, 0
ans =

    ' HL_06059.6  4WZD A   32 U   40'

 scores better against   2 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -4.99, deficit -0.59, prct   0.00; HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  0, 0, MLPS -5.45, deficit  0.65, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            GCUGCGAAC (   1) MLPS  -6.43 deficit   1.68 prct   0.00 CutScore  87.34;  Ed  0, 0
ans =

    ' HL_06059.6  6GSL G   32 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUGCGAAC (   1) MLPS  -6.43 deficit   1.68 prct   0.00 CutScore  87.34;  Ed  0, 0
ans =

    ' HL_06059.6  1XNQ G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CCUUACAAG (   1) MLPS  -6.62 deficit   1.87 prct   0.00 CutScore  85.96;  Ed  0, 0
ans =

    ' HL_06059.6  5IBB C   31 G   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CCUUACAAG (   1) MLPS  -6.62 deficit   1.87 prct   0.00 CutScore  85.96;  Ed  0, 0
ans =

    ' HL_06059.6  7VNV C   31 G   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            UCUCGAAAA (   1) MLPS  -6.71 deficit   1.96 prct   0.00 CutScore  85.24;  Ed  0, 0
ans =

    ' HL_06059.6  4V9I U   31 A   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            ACUUCAAAU (   1) MLPS  -6.96 deficit   2.21 prct   0.00 CutScore  83.41;  Ed  0, 0
ans =

    ' HL_06059.6  3W3S A   31 U   39'

 scores better against   1 groups: HL_73266.9,  9 NTs, cWW-F-F-cSW-cSH-F                       , Ed  2, 1, MLPS -5.95, deficit  1.16, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CCUCUCAAG (   1) MLPS  -7.05 deficit   2.31 prct   0.00 CutScore  82.68;  Ed  0, 0
ans =

    ' HL_06059.6  1N78 C  531 G  539'

 scores better against   1 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.27, deficit  0.69, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            AUUGCAAAU (   1) MLPS  -7.12 deficit   2.37 prct   0.00 CutScore  82.19;  Ed  0, 0
ans =

    ' HL_06059.6  9MTS A   31 U   39'

 scores better against   2 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  2, 0, MLPS -6.59, deficit  0.10, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.63, deficit  1.05, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            AUUGCAAAU (   1) MLPS  -7.12 deficit   2.37 prct   0.00 CutScore  82.19;  Ed  0, 0
ans =

    ' HL_06059.6  1U0B A   31 U   39'

 scores better against   2 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  2, 0, MLPS -6.59, deficit  0.10, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.63, deficit  1.05, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            AUUGCAAAU (   1) MLPS  -7.12 deficit   2.37 prct   0.00 CutScore  82.19;  Ed  0, 0
ans =

    ' HL_06059.6  1B23 A   31 U   39'

 scores better against   2 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  2, 0, MLPS -6.59, deficit  0.10, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 1, MLPS -6.63, deficit  1.05, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            ACUCCAGAU (   1) MLPS  -7.28 deficit   2.53 prct   0.00 CutScore  81.01;  Ed  0, 0
ans =

    ' HL_06059.6  2AZX A  531 U  539'

 scores better against   1 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -6.50, deficit  0.92, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            UUUCACAAA (   1) MLPS  -7.34 deficit   2.59 prct   0.00 CutScore  80.55;  Ed  0, 0
ans =

    ' HL_06059.6  5T83 U   56 A   64'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUUUUAAU (   1) MLPS  -7.38 deficit   2.63 prct   0.00 CutScore  80.25;  Ed  0, 0
ans =

    ' HL_06059.6  5E81 A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUUUUAAU (   1) MLPS  -7.38 deficit   2.63 prct   0.00 CutScore  80.25;  Ed  0, 0
ans =

    ' HL_06059.6  1FIR A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUUUUAAU (   1) MLPS  -7.38 deficit   2.63 prct   0.00 CutScore  80.25;  Ed  0, 0
ans =

    ' HL_06059.6  5E7K A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUUUUAAU (   1) MLPS  -7.38 deficit   2.63 prct   0.00 CutScore  80.25;  Ed  0, 0
ans =

    ' HL_06059.6  5E81 A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUUGGUAAG (   1) MLPS  -7.44 deficit   2.70 prct   0.00 CutScore  79.75;  Ed  0, 0
ans =

    ' HL_06059.6  6GSK C   31 G   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AUUGAAGAU (   1) MLPS  -7.48 deficit   2.73 prct   0.00 CutScore  79.47;  Ed  0, 0
ans =

    ' HL_06059.6  7OSM A   31 U   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00            CUUGCCAAG (   1) MLPS  -7.74 deficit   3.00 prct   0.00 CutScore  77.50;  Ed  0, 0
ans =

    ' HL_06059.6  4MGN C   30 G   38'

 scores better against   2 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  1, 1, MLPS -6.66, deficit  0.16, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -7.31, deficit  1.74, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CUUCCCAAG (   1) MLPS  -7.92 deficit   3.17 prct   0.00 CutScore  76.16;  Ed  0, 0
ans =

    ' HL_06059.6  7U2I C   31 G   39'

 scores better against   2 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  2, 2, MLPS -7.76, deficit  1.26, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -7.90, deficit  2.32, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            GUUCACGUC (   1) MLPS  -9.43 deficit   4.68 prct   0.00 CutScore  64.87;  Ed  0, 0
ans =

    ' HL_06059.6  7QR3 G   19 C   27'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCACGUC (   1) MLPS  -9.43 deficit   4.68 prct   0.00 CutScore  64.87;  Ed  0, 0
ans =

    ' HL_06059.6  7QR4 G   19 C   27'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            GUUCGGGAC (   1) MLPS  -9.49 deficit   4.75 prct   0.00 CutScore  64.35;  Ed  0, 0
ans =

    ' HL_06059.6  6NSH G   31 C   39'

 scores better against   1 groups: HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -9.21, deficit  0.95, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGGGAC (   1) MLPS  -9.49 deficit   4.75 prct   0.00 CutScore  64.35;  Ed  0, 0
ans =

    ' HL_06059.6  4LNT G   31 C   39'

 scores better against   1 groups: HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -9.21, deficit  0.95, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGGGAC (   1) MLPS  -9.49 deficit   4.75 prct   0.00 CutScore  64.35;  Ed  0, 0
ans =

    ' HL_06059.6  6NTA G   31 C   39'

 scores better against   1 groups: HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -9.21, deficit  0.95, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGGGAC (   1) MLPS  -9.49 deficit   4.75 prct   0.00 CutScore  64.35;  Ed  0, 0
ans =

    ' HL_06059.6  6NWY G   31 C   39'

 scores better against   1 groups: HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -9.21, deficit  0.95, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            CUUGAGGUG (   1) MLPS  -9.63 deficit   4.89 prct   0.00 CutScore  63.31;  Ed  0, 0
ans =

    ' HL_06059.6  4WSM C   32 G   40'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CUUGAGGUG (   1) MLPS  -9.63 deficit   4.89 prct   0.00 CutScore  63.31;  Ed  0, 0
ans =

    ' HL_06059.6  1N32 C   31 G   39'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CGUCGUCGG (   1) MLPS -12.71 deficit   7.96 prct   0.00 CutScore  40.19;  Ed  0, 0
ans =

    ' HL_06059.6  4R4V C  626 G  634'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   3 Equal:   0 Score 0.00            CUCGACACG (   1) MLPS -13.07 deficit   8.32 prct   0.00 CutScore  37.50;  Ed  0, 0
ans =

    ' HL_06059.6  4P5J C   25 G   33'

 scores better against   3 groups: HL_80362.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.68, deficit  1.61, prct   0.00; HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  3, 3, MLPS -9.78, deficit  4.21, prct   0.00; HL_04259.3,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -11.63, deficit  5.06, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           UCAAGCCUAG (   1) MLPS -20.09 deficit  15.34 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_06059.6  7KGA U   22 G   31'

 scores better against   2 groups: HL_74292.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -12.60, deficit  5.53, prct   0.00; HL_77600.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -13.47, deficit  3.72, prct   0.00; 
Group  18 is from HL_06226.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_06226.4
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         CCUGAGAAACGG (   1) MLPS  -8.08 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_06226.4  8P9A C  393 G  404'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CCUGAGAAACGG (   1) MLPS  -8.08 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_06226.4  8CRE C  391 G  402'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAUCAGAAUGC (   1) MLPS  -9.38 deficit   1.30 prct   0.00 CutScore  93.42;  Ed  0, 0
ans =

    ' HL_06226.4  5J7L G 1356 C 1366'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         GAUCAGCCAUGC (   1) MLPS -11.57 deficit   3.49 prct   0.00 CutScore  82.36;  Ed  0, 0
ans =

    ' HL_06226.4  4LFB G 1356 C 1366'

 matches the original group, cWW-F-F-F-F-F-F-F
Group  90 is from HL_35677.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_35677.3
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           UGAUUUGCUA (   1) MLPS  -7.38 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_35677.3  2XDB U    4 A   13'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           UGAUUUGCUA (   1) MLPS  -7.38 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_35677.3  7D8O U    4 A   13'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           UGAUUUGCUA (   1) MLPS  -7.38 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_35677.3  2XD0 U    4 A   13'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00           CGGCUUCCUG (   1) MLPS -10.01 deficit   2.64 prct   0.00 CutScore  82.87;  Ed  0, 0
ans =

    ' HL_35677.3  6YML C   15 G   24'

 scores better against   1 groups: HL_93438.2, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  2, 1, MLPS -9.68, deficit  2.39, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CGGCUUCCUG (   1) MLPS -10.01 deficit   2.64 prct   0.00 CutScore  82.87;  Ed  0, 0
ans =

    ' HL_35677.3  6YL5 C   15 G   24'

 scores better against   1 groups: HL_93438.2, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  2, 1, MLPS -9.68, deficit  2.39, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           UGCUAAUCUG (   1) MLPS -11.65 deficit   4.27 prct   0.00 CutScore  72.27;  Ed  0, 0
ans =

    ' HL_35677.3  5J7L U   59 G   68'

 scores better against   2 groups: HL_93438.2, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  2, 2, MLPS -10.24, deficit  2.95, prct   0.00; HL_18423.1,  7 NTs, cWW-tSH-tHS-F                           , Ed  4, 4, MLPS -11.48, deficit  2.18, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CUUCCUGCG (   1) MLPS -12.70 deficit   5.32 prct   0.00 CutScore  65.45;  Ed  0, 0
ans =

    ' HL_35677.3  2Z75 C   78 G   86'

 scores better against   2 groups: HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  3, 2, MLPS -10.87, deficit  2.62, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  5, 3, MLPS -12.12, deficit  9.03, prct   0.00; 
Group 124 is from HL_50779.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50779.4
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GACUCAACAC (   1) MLPS  -5.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50779.4  8CRE G 1173 C 1182'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GACUCAACAC (   1) MLPS  -5.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50779.4  8P9A G 1188 C 1197'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GAAGCAACGC (   1) MLPS  -5.58 deficit   0.51 prct   0.00 CutScore  97.10;  Ed  0, 0
ans =

    ' HL_50779.4  4LFB G  963 C  972'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GAUGCAACGC (   1) MLPS  -5.58 deficit   0.51 prct   0.00 CutScore  97.10;  Ed  0, 0
ans =

    ' HL_50779.4  5J7L G  963 C  972'

 matches the original group, cWW-F-F-F-F-F-F-F
Group 161 is from HL_67079.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_67079.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         AUUGUAAUUAUU (   1) MLPS -10.61 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_67079.1  8P9A A 1550 U 1561'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         AUUGUAAUUGUU (   1) MLPS -10.61 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_67079.1  8CRE A 1537 U 1548'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GGUUCGAAUCC (   1) MLPS -11.55 deficit   0.94 prct   0.00 CutScore  94.12;  Ed  0, 0
ans =

    ' HL_67079.1  4V7M G   51 C   61'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00          CAACUCUACCG (   1) MLPS -13.81 deficit   3.19 prct   0.00 CutScore  79.97;  Ed  0, 0
ans =

    ' HL_67079.1  4V9I C   52 G   62'

 scores better against   1 groups: HL_94376.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  5, 4, MLPS -9.95, deficit  2.18, prct   0.00; 
Group 165 is from HL_68572.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_68572.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       CGGAGCGGCUGAAG (   1) MLPS -14.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_68572.1  4V9I C   11 G   24'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00       UCAGUCUGGCAGAG (   1) MLPS -14.36 deficit   0.23 prct   0.00 CutScore  98.64;  Ed  0, 0
ans =

    ' HL_68572.1  7KJT U   11 G   24'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00       CUCAGCAGGUAGAG (   1) MLPS -14.41 deficit   0.28 prct   0.00 CutScore  98.34;  Ed  0, 0
ans =

    ' HL_68572.1  4GCW C   11 G   24'

 matches the original group, cWW-F-F-F-F-F-F-F
Group 193 is from HL_80241.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80241.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            UGGUUUCCA (   1) MLPS  -6.85 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80241.1  8V1I U   22 A   30'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            UGAUAUGAA (   1) MLPS  -6.85 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80241.1  5J7L U   87 A   95'

 matches the original group, cWW-F-F-F-F-F-F-F
Group 196 is from HL_80599.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80599.2
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            UUCAGUGUG (   1) MLPS  -5.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80599.2  8P9A U 2724 G 2732'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            UUCAGUGUG (   1) MLPS  -5.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80599.2  8CRE U 2696 G 2704'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00            CCUUACGAG (   1) MLPS  -9.25 deficit   3.95 prct   0.00 CutScore  77.90;  Ed  0, 0
ans =

    ' HL_80599.2  1J2B C  932 G  940'

 scores better against   2 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -7.94, deficit  3.19, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  3, 1, MLPS -8.04, deficit  1.61, prct   0.00; 
Group 230 is from HL_91503.7 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_91503.7
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GUUCGUGGAGC (   1) MLPS  -6.99 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_91503.7  9DFE G  382 C  392'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GUUCGUGAAAC (   1) MLPS  -6.99 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_91503.7  7A0S G  395 C  405'

 matches the original group, cWW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          ACACGUGGUAU (   1) MLPS  -8.07 deficit   1.08 prct   0.00 CutScore  94.01;  Ed  0, 0
ans =

    ' HL_91503.7  5J7L A  382 U  392'

 matches the original group, cWW-F-F-F-F-F-F-F
Group  48 is from HL_19210.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_19210.3
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CUUAGAAGCAG (   1) MLPS  -4.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_19210.3  1MMS C 1064 G 1074'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CUUAGAAGCAG (   1) MLPS  -4.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_19210.3  5D8H C 1174 G 1184'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CUUAGAAGCAG (   1) MLPS  -4.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_19210.3  6PRV C 1064 G 1074'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CUUAGAAGCAG (   1) MLPS  -4.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_19210.3  5J7L C 1064 G 1074'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAUGGAAGUCG (   1) MLPS  -6.82 deficit   2.01 prct   0.00 CutScore  88.91;  Ed  0, 0
ans =

    ' HL_19210.3  8CRE C 1235 G 1245'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAUGGAAGUCG (   1) MLPS  -6.82 deficit   2.01 prct   0.00 CutScore  88.91;  Ed  0, 0
ans =

    ' HL_19210.3  8P9A C 1239 G 1249'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00           GUUCGAUUCC (   1) MLPS  -9.68 deficit   4.86 prct   0.00 CutScore  73.12;  Ed  0, 0
ans =

    ' HL_19210.3  7OSM G   53 C   62'

 scores better against   2 groups: HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  1, 1, MLPS -6.84, deficit  4.48, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  1, 1, MLPS -9.30, deficit  6.21, prct   0.00; 
Group  53 is from HL_20781.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_20781.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CAAAAAUGAAG (   1) MLPS  -7.87 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20781.1  5XWP C    9 G   19'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group  76 is from HL_29958.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_29958.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        AGGUGGGGUUUAU (   1) MLPS  -9.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_29958.1  2NZ4 A   31 U   43'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group  85 is from HL_33074.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_33074.4
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  4C4W C   11 G   22'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  8JY0 C   13 G   24'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  2NZ4 C  17A G  17L'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  5FJ4 C   11 G   22'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  1M5K C   35 G   46'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  5DDP C   34 G   45'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  7DLZ C   18 G   29'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  7QR4 C   43 G   54'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  8GXB C   23 G   34'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  4PKD C   64 G   75'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  1U6B C 1002 G 1013'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  8GXB C   23 G   34'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  3CUL C   29 G   40'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  3HHN C 1004 G 1015'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  7QR3 C   43 G   54'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  7D7V C   27 G   38'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  5DDO C   34 G   45'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  3MXH C   65 G   75'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  5DDO C   34 G   45'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACUCCG (   1) MLPS  -1.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_33074.4  6LAX C   15 G   26'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACCUCG (   1) MLPS  -6.09 deficit   4.21 prct   0.00 CutScore  78.96;  Ed  0, 0
ans =

    ' HL_33074.4  6F4H C    6 G   17'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAUUGCACCUCG (   1) MLPS  -6.09 deficit   4.21 prct   0.00 CutScore  78.96;  Ed  0, 0
ans =

    ' HL_33074.4  6F4H C    6 G   17'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 105 is from HL_41543.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_41543.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GUUUGCGGGAC (   1) MLPS  -8.87 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_41543.1  5X2G G   54 C   64'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         GUGCAGCCCGUC (   1) MLPS  -9.02 deficit   0.14 prct   0.00 CutScore  99.21;  Ed  0, 0
ans =

    ' HL_41543.1  7MKY G    9 C   20'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 135 is from HL_55436.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_55436.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           UCUGCGAGGA (   1) MLPS  -8.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_55436.1  6VMY U  333 A  342'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           ACGGGGAGUU (   1) MLPS  -8.16 deficit   0.08 prct   0.00 CutScore  99.49;  Ed  0, 0
ans =

    ' HL_55436.1  3SUX A   38 U   47'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GGUCCCAGAC (   1) MLPS  -8.86 deficit   0.78 prct   0.00 CutScore  95.25;  Ed  0, 0
ans =

    ' HL_55436.1  2JLT G    5 C   14'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00           UCAGAGGACA (   1) MLPS -10.93 deficit   2.85 prct   0.00 CutScore  82.70;  Ed  0, 0
ans =

    ' HL_55436.1  1F27 U    7 A   16'

 scores better against   1 groups: HL_04641.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -8.73, deficit  2.28, prct   0.00; 
Group 154 is from HL_64292.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_64292.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     GGGCCCAUUCGGGUCU (   1) MLPS -15.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_64292.1  8P9A G  486 U  501'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00    CGGAUCAGUCACCCAAG (   1) MLPS -18.62 deficit   2.75 prct   0.00 CutScore  83.04;  Ed  0, 0
ans =

    ' HL_64292.1  2ANN C    5 G   21'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 162 is from HL_67407.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_67407.5
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CGACCGCCUGG (   1) MLPS  -7.12 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_67407.5  4ZNP C   58 G   68'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CGACCGUCUGG (   1) MLPS  -7.74 deficit   0.62 prct   0.00 CutScore  96.84;  Ed  0, 0
ans =

    ' HL_67407.5  9BZC C   77 G   87'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CGACCGUCUGG (   1) MLPS  -7.74 deficit   0.62 prct   0.00 CutScore  96.84;  Ed  0, 0
ans =

    ' HL_67407.5  5BTP C   62 G   72'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CGCCCGCCUGG (   1) MLPS  -8.22 deficit   1.10 prct   0.00 CutScore  94.39;  Ed  0, 0
ans =

    ' HL_67407.5  4XWF C   50 G   60'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CGCCCGCCUGG (   1) MLPS  -8.22 deficit   1.10 prct   0.00 CutScore  94.39;  Ed  0, 0
ans =

    ' HL_67407.5  8VVJ C   50 G   60'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAAGCUCGCAC (   1) MLPS  -8.69 deficit   1.57 prct   0.00 CutScore  91.95;  Ed  0, 0
ans =

    ' HL_67407.5  7JRT G   35 C   45'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAAGCUCGCAC (   1) MLPS  -8.69 deficit   1.57 prct   0.00 CutScore  91.95;  Ed  0, 0
ans =

    ' HL_67407.5  7JRT G   35 C   45'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00          GAAGCCUCCAC (   1) MLPS  -9.21 deficit   2.09 prct   0.00 CutScore  89.34;  Ed  0, 0
ans =

    ' HL_67407.5  7JRT G  102 C  112'

 scores better against   1 groups: HL_50418.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  0, 0, MLPS -8.94, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00          GAAGCAGGCAC (   1) MLPS -10.67 deficit   3.55 prct   0.00 CutScore  81.85;  Ed  0, 0
ans =

    ' HL_67407.5  7JRS G   63 C   73'

 scores better against   1 groups: HL_50418.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  0, 0, MLPS -8.94, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00          GAGGUGCACAC (   1) MLPS -12.04 deficit   4.92 prct   0.00 CutScore  74.85;  Ed  0, 0
ans =

    ' HL_67407.5  4PJO G   17 C   27'

 scores better against   1 groups: HL_94376.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  1, 1, MLPS -9.38, deficit  1.61, prct   0.00; 
Group 164 is from HL_68257.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_68257.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          UGAAUCCAUAG (   1) MLPS  -9.00 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_68257.1  5J7L U  158 G  168'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00       AAACGCUUGCGUUU (   1) MLPS -13.42 deficit   4.41 prct   0.00 CutScore  75.63;  Ed  0, 0
ans =

    ' HL_68257.1  7A0S A  253 U  266'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 167 is from HL_69139.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_69139.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           UCUUUUAUUG (   1) MLPS -10.01 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_69139.1  8CRE U 1040 G 1049'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        AGCACGUGAAAUU (   1) MLPS -13.02 deficit   3.01 prct   0.00 CutScore  80.14;  Ed  0, 0
ans =

    ' HL_69139.1  4WF9 A  427 U  439'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 180 is from HL_74292.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_74292.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GCAAGGAGAC (   1) MLPS  -7.08 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74292.1  4FRN G   90 C   99'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 182 is from HL_75293.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_75293.5
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00           AGGUGAAAUU (   1) MLPS  -8.31 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_75293.5  8CRE A  885 U  894'

 scores better against   1 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 2, MLPS -8.27, deficit  2.56, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           AGGUGAAAUU (   1) MLPS  -8.31 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_75293.5  8P9A A  900 U  909'

 scores better against   1 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 2, MLPS -8.27, deficit  2.56, prct   0.00; 
Better:   0 Equal:   0 Score 1.00          GAUUAGAUACC (   1) MLPS  -8.55 deficit   0.24 prct   0.00 CutScore  98.41;  Ed  0, 0
ans =

    ' HL_75293.5  5J7L G  786 C  796'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAUUAGAUACC (   1) MLPS  -8.55 deficit   0.24 prct   0.00 CutScore  98.41;  Ed  0, 0
ans =

    ' HL_75293.5  4LFB G  786 C  796'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00           CGGUGAAAUG (   1) MLPS  -8.60 deficit   0.29 prct   0.00 CutScore  98.06;  Ed  0, 0
ans =

    ' HL_75293.5  5J7L C  689 G  698'

 scores better against   1 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  2, 2, MLPS -8.22, deficit  2.50, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CGGUGAAAUG (   1) MLPS  -8.60 deficit   0.29 prct   0.00 CutScore  98.06;  Ed  0, 0
ans =

    ' HL_75293.5  4LFB C  689 G  698'

 scores better against   1 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  2, 2, MLPS -8.22, deficit  2.50, prct   0.00; 
Better:   0 Equal:   0 Score 1.00           GCGUAAUAGC (   1) MLPS  -9.88 deficit   1.57 prct   0.00 CutScore  89.51;  Ed  0, 0
ans =

    ' HL_75293.5  5J7L G 1091 C 1100'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAUCAGAUACC (   1) MLPS  -9.91 deficit   1.60 prct   0.00 CutScore  89.32;  Ed  0, 0
ans =

    ' HL_75293.5  8P9A G  997 C 1007'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAUCAGAUACC (   1) MLPS  -9.91 deficit   1.60 prct   0.00 CutScore  89.32;  Ed  0, 0
ans =

    ' HL_75293.5  8CRE G  982 C  992'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00           CCUUGGUAAG (   1) MLPS -11.29 deficit   2.98 prct   0.00 CutScore  80.11;  Ed  0, 0
ans =

    ' HL_75293.5  4TUE C   31 G   40'

 scores better against   2 groups: HL_99867.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -10.73, deficit  2.15, prct   0.00; HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 3, MLPS -10.92, deficit  5.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CCCAAUAGGG (   1) MLPS -14.74 deficit   6.42 prct   0.00 CutScore  57.06;  Ed  0, 0
ans =

    ' HL_75293.5  4WSM C   47 G   56'

 scores better against   1 groups: HL_97733.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  4, 4, MLPS -11.70, deficit  3.61, prct   0.00; 
Group 237 is from HL_93438.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_93438.2
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           UGGCUACCUG (   1) MLPS  -7.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93438.2  9DFE U   59 G   68'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           UGCCAAGCUG (   1) MLPS  -7.75 deficit   0.47 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_93438.2  4V9F U   55 G   64'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           CAGCGAAAUG (   1) MLPS  -8.29 deficit   1.01 prct   0.00 CutScore  93.94;  Ed  0, 0
ans =

    ' HL_93438.2  8CRE C   47 G   56'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           CAGCGAAAUG (   1) MLPS  -8.29 deficit   1.01 prct   0.00 CutScore  93.94;  Ed  0, 0
ans =

    ' HL_93438.2  8P9A C   47 G   56'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00           CGAUUACCUG (   1) MLPS  -8.99 deficit   1.70 prct   0.00 CutScore  89.79;  Ed  0, 0
ans =

    ' HL_93438.2  7A0S C   58 G   67'

 scores better against   1 groups: HL_35677.3,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 2, MLPS -7.91, deficit  0.54, prct   0.00; 
Better:   0 Equal:   0 Score 1.00           UUACUAACGA (   1) MLPS  -9.82 deficit   2.53 prct   0.00 CutScore  84.75;  Ed  0, 0
ans =

    ' HL_93438.2  4WF9 U   59 A   68'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group 253 is from HL_99867.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_99867.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GUUCGGGGAC (   1) MLPS  -8.59 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_99867.1  4L47 G   31 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GCUGGCGGUC (   1) MLPS  -9.10 deficit   0.51 prct   0.00 CutScore  96.40;  Ed  0, 0
ans =

    ' HL_99867.1  6XKO G   63 C   72'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GAUGCUUGUC (   1) MLPS  -9.43 deficit   0.85 prct   0.00 CutScore  94.03;  Ed  0, 0
ans =

    ' HL_99867.1  3PDR G  127 C  136'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           AUUAGGUAGU (   1) MLPS  -9.58 deficit   1.00 prct   0.00 CutScore  92.98;  Ed  0, 0
ans =

    ' HL_99867.1  3B31 A 6184 U 6193'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GAAGUGCAAC (   1) MLPS -10.53 deficit   1.95 prct   0.00 CutScore  86.29;  Ed  0, 0
ans =

    ' HL_99867.1  387D G    4 C   13'

 matches the original group, cWW-F-F-F-F-F-F-F-F
Group  40 is from HL_15118.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_15118.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00         CAUUGCACUCCG (   1) MLPS  -8.56 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_15118.1  3IWN C   57 G   68'

 scores better against   2 groups: HL_33074.4, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  0, 0, MLPS -1.88, deficit  0.00, prct   0.00; HL_31581.6, 11 NTs, cWW-cHS-F-F-F-cWW-F-F-F                 , Ed  0, 0, MLPS -7.15, deficit  0.00, prct   0.00; 
Group  93 is from HL_36684.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_36684.4
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GCUUGAGAACC (   1) MLPS  -7.81 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_36684.4  7K16 G   27 C   37'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAUUGUGAUUC (   1) MLPS  -8.40 deficit   0.59 prct   0.00 CutScore  96.57;  Ed  0, 0
ans =

    ' HL_36684.4  4V7M G   29 C   39'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CCUUGGUAAGG (   1) MLPS  -8.74 deficit   0.92 prct   0.00 CutScore  94.62;  Ed  0, 0
ans =

    ' HL_36684.4  6GSK C   30 G   40'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CCUUGAGGUGG (   1) MLPS  -9.83 deficit   2.02 prct   0.00 CutScore  88.20;  Ed  0, 0
ans =

    ' HL_36684.4  4WSM C   31 G   41'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GACUUUUAAUC (   1) MLPS -10.49 deficit   2.68 prct   0.00 CutScore  84.37;  Ed  0, 0
ans =

    ' HL_36684.4  5IB8 G   30 C   40'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GGCUACGAACC (   1) MLPS -10.55 deficit   2.73 prct   0.00 CutScore  84.03;  Ed  0, 0
ans =

    ' HL_36684.4  6GSL G   31 C   41'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GGUUCGGCGUC (   1) MLPS -11.31 deficit   3.50 prct   0.00 CutScore  79.57;  Ed  0, 0
ans =

    ' HL_36684.4  4UYK G   21 C   31'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Group 122 is from HL_50418.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50418.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GAAGCAGGCAC (   1) MLPS  -8.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50418.1  7JRS G   63 C   73'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAAGCCUCCAC (   1) MLPS  -8.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50418.1  7JRT G  102 C  112'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CUGGAGAUACG (   1) MLPS -11.55 deficit   2.61 prct   0.00 CutScore  83.77;  Ed  0, 0
ans =

    ' HL_50418.1  7A0S C   85 G   95'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Group 169 is from HL_70658.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_70658.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        AAUGGGAUGUCGU (   1) MLPS -10.78 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_70658.1  4LVW A   33 U   45'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        AGUAACUAUGACU (   1) MLPS -11.68 deficit   0.90 prct   0.00 CutScore  95.28;  Ed  0, 0
ans =

    ' HL_70658.1  8P9A A 2252 U 2264'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Group 170 is from HL_70751.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_70751.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CAAUAUCGAAG (   1) MLPS  -6.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_70751.1  5WTK C    7 G   17'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Group 201 is from HL_81312.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_81312.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         CAAUUUAUACAG (   1) MLPS  -6.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81312.1  8P9A C   70 G   81'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAAUUUAUACAG (   1) MLPS  -6.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81312.1  8CRE C   70 G   81'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Group 240 is from HL_94376.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_94376.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GAAGUGCACAC (   1) MLPS  -7.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_94376.1  1ZCI G    7 C   17'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GAAGUGCACAC (   1) MLPS  -7.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_94376.1  1ZCI G    7 C   17'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         UAGUCUCUUUCG (   1) MLPS -12.94 deficit   5.17 prct   0.00 CutScore  71.53;  Ed  0, 0
ans =

    ' HL_94376.1  4QK9 U   72 G   83'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F
Group 189 is from HL_78284.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_78284.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         UUCAGAGAUGAG (   1) MLPS -10.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_78284.1  5J7L U 1009 G 1020'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00       GACCUAGAUCACCC (   1) MLPS -13.58 deficit   2.84 prct   0.00 CutScore  84.07;  Ed  0, 0
ans =

    ' HL_78284.1  1EC6 G    4 C   17'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F
Group 153 is from HL_63355.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_63355.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       GCUUAGAAGCAGCC (   1) MLPS  -7.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_63355.1  7A0S G 1074 C 1087'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F
Group 211 is from HL_85461.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_85461.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GGUAGCCAUUUAUGGCGAAC (   1) MLPS -14.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85461.1  8CRE G  701 C  720'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
Group 225 is from HL_89346.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_89346.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  CUUCCCGAAUUGUGGAUAG (   1) MLPS -17.83 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89346.1  6ZDU C 1268 G 1286'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00 AGAAGGGGGCAACUCCAUCU (   1) MLPS -20.66 deficit   2.83 prct   0.00 CutScore  88.69;  Ed  0, 0
ans =

    ' HL_89346.1  8P9A A 1691 U 1710'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Group 250 is from HL_99324.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_99324.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00    CAACUUAGGAUUUUAGG (   1) MLPS -12.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_99324.1  6XKO C    4 G   20'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00    UAUUUUGUUGGUUUCUA (   1) MLPS -13.94 deficit   1.08 prct   0.00 CutScore  95.69;  Ed  0, 0
ans =

    ' HL_99324.1  8CRE U  813 A  829'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Group 178 is from HL_73916.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_73916.1
This group is considered to be structured ***************************
Number of NTs: 37  Signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 AUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUUCCGAGU (   1) MLPS -26.32 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73916.1  4WT8 A    7 U   46'

 matches the original group, cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Group 231 is from HL_91641.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_91641.1
This group is considered to be structured ***************************
Number of NTs: 16  Signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00    AGUCGCGUGAUAAAUGU (   1) MLPS -12.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_91641.1  2QWY A   24 U   40'

 matches the original group, cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F
Group 111 is from HL_45785.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_45785.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-F-F-F-cSH-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GUUCCCUCACC (   1) MLPS  -6.52 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_45785.1  8FZA G    5 C   15'

 matches the original group, cWW-F-F-F-F-cSH-F-F
Better:   0 Equal:   0 Score 1.00          GUUCCCUCACC (   1) MLPS  -6.52 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_45785.1  8FZA G    5 C   15'

 matches the original group, cWW-F-F-F-F-cSH-F-F
Group 229 is from HL_90620.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_90620.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-F-F-F-cSW-cSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          AACCGUAAAAU (   1) MLPS  -7.05 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_90620.1  6P2H A   59 U   69'

 matches the original group, cWW-F-F-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00          AACCGUAAAAU (   1) MLPS  -7.05 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_90620.1  3IVN A   49 U   59'

 matches the original group, cWW-F-F-F-F-cSW-cSH-F
Group 208 is from HL_84847.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_84847.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       GUUCGCAACCAUCC (   1) MLPS  -8.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_84847.1  7REX G    5 C   18'

 matches the original group, cWW-F-F-F-F-tWW-F-F-F-F-F-F
Group 192 is from HL_80008.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80008.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-cSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            CUUGCAAAG (   1) MLPS  -6.50 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80008.1  2R8S C  166 G  174'

 matches the original group, cWW-F-F-F-cSH-F
Group 242 is from HL_97733.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_97733.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-F-cSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CCCGGUCAGG (   1) MLPS  -8.09 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_97733.1  5NWQ C   20 G   29'

 matches the original group, cWW-F-F-F-cSH-F
Group 251 is from HL_99748.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_99748.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-F-F-cSH
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CCAGUUAG (   1) MLPS  -6.70 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_99748.1  4P5J C    7 G   14'

 matches the original group, cWW-F-F-cSH
Group  25 is from HL_08510.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_08510.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-cSH-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            AUGUGCUUU (   1) MLPS  -5.33 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_08510.1  2QUS A   18 U   26'

 matches the original group, cWW-F-F-cSH-F-F
Better:   0 Equal:   0 Score 1.00            AUGUGCUUU (   1) MLPS  -5.33 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_08510.1  2QUW A   18 U   26'

 matches the original group, cWW-F-F-cSH-F-F
Group  92 is from HL_36335.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_36335.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-cSS-cSS-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CAAGAAAGAG (   1) MLPS  -7.91 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_36335.1  5W1H C  -19 G  -10'

 matches the original group, cWW-F-F-cSS-cSS-F
Better:   0 Equal:   0 Score 1.00           CAAGAAAGAG (   1) MLPS  -7.91 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_36335.1  5WLH C  -19 G  -10'

 matches the original group, cWW-F-F-cSS-cSS-F
Group 181 is from HL_74379.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_74379.3
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-cSS-cSS-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         GCAAGGUUAACC (   1) MLPS  -9.44 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74379.3  8JY0 G   42 C   53'

 matches the original group, cWW-F-F-cSS-cSS-F-F-F
Better:   0 Equal:   0 Score 1.00         GCAAGGUUAACC (   1) MLPS  -9.44 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74379.3  9DXL G   26 C   37'

 matches the original group, cWW-F-F-cSS-cSS-F-F-F
Group 177 is from HL_73266.9 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_73266.9
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-cSW-cSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GCCUUAAAC (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73266.9  5SWD G   59 C   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            GCCUUAAAC (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73266.9  3LA5 G   59 C   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            GCCUUAAAC (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73266.9  4LX6 G   59 C   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            GCCUUAAAC (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73266.9  4XNR G   59 C   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            GCCUUAAAC (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73266.9  1Y26 G   59 C   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            GCCUUAAAC (   1) MLPS  -4.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73266.9  7KVT G   55 C   63'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            ACCGUAAAU (   1) MLPS  -5.05 deficit   0.26 prct   0.00 CutScore  98.21;  Ed  0, 0
ans =

    ' HL_73266.9  4FEN A   59 U   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            ACCGUAAAU (   1) MLPS  -5.05 deficit   0.26 prct   0.00 CutScore  98.21;  Ed  0, 0
ans =

    ' HL_73266.9  1Y27 A   59 U   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            ACCGUAAAU (   1) MLPS  -5.05 deficit   0.26 prct   0.00 CutScore  98.21;  Ed  0, 0
ans =

    ' HL_73266.9  5KPY A   59 U   67'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            UCUUUAAAA (   1) MLPS  -5.42 deficit   0.62 prct   0.00 CutScore  95.71;  Ed  0, 0
ans =

    ' HL_73266.9  6MJ0 U   12 A   20'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            ACCACAAAU (   1) MLPS  -5.43 deficit   0.64 prct   0.00 CutScore  95.62;  Ed  0, 0
ans =

    ' HL_73266.9  8KEB A   47 U   55'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   0 Equal:   0 Score 1.00            ACCCUAAAU (   1) MLPS  -5.43 deficit   0.64 prct   0.00 CutScore  95.60;  Ed  0, 0
ans =

    ' HL_73266.9  9IWF A   46 U   54'

 matches the original group, cWW-F-F-cSW-cSH-F
Better:   1 Equal:   0 Score 0.00            ACUGUAAAU (   1) MLPS  -5.45 deficit   0.65 prct   0.00 CutScore  95.50;  Ed  0, 0
ans =

    ' HL_73266.9  3RKF A   59 U   67'

 scores better against   1 groups: HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -4.99, deficit -0.59, prct   0.00; 
Group 140 is from HL_57863.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_57863.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-F-F-cWH-cWH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GAGGAGGUC (   1) MLPS  -5.02 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_57863.1  5BJO G   20 C   28'

 matches the original group, cWW-F-F-cWH-cWH-F
Better:   0 Equal:   0 Score 1.00           GAAGGAGGUC (   1) MLPS  -5.71 deficit   0.69 prct   0.00 CutScore  96.05;  Ed  0, 0
ans =

    ' HL_57863.1  5BJO G    9 C   18'

 matches the original group, cWW-F-F-cWH-cWH-F
Group  47 is from HL_18978.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_18978.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-F-tHW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CUGUUCGCAG (   1) MLPS  -6.18 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_18978.1  9FN3 C   18 G   27'

 matches the original group, cWW-F-F-tHW-F-F-F
Group 101 is from HL_38901.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_38901.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-cSH
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               GUGGUC (   1) MLPS  -4.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38901.2  3ADD G   15 C  20A'

 matches the original group, cWW-F-cSH
Better:   0 Equal:   0 Score 1.00               GUGGUC (   1) MLPS  -4.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38901.2  3RG5 G   15 C  20A'

 matches the original group, cWW-F-cSH
Better:   1 Equal:   0 Score 0.00               CUGGUG (   1) MLPS  -4.97 deficit   0.09 prct   0.00 CutScore  99.06;  Ed  0, 0
ans =

    ' HL_38901.2  3W3S C   15 G  20A'

 scores better against   1 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UUGGUA (   1) MLPS  -5.04 deficit   0.15 prct   0.00 CutScore  98.41;  Ed  0, 0
ans =

    ' HL_38901.2  3AM1 U   18 A   23'

 scores better against   1 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.02, deficit  2.65, prct   0.00; 
Better:   7 Equal:   0 Score 0.00                GAGUC (   1) MLPS  -6.65 deficit   1.76 prct   0.00 CutScore  81.44;  Ed  0, 0
ans =

    ' HL_38901.2  5F9R G  105 C  109'

 scores better against   7 groups: HL_26631.1,  5 NTs, cWW-F-F-F                               , Ed  2, 0, MLPS -2.68, deficit  0.12, prct   0.00; HL_76094.1,  5 NTs, cWW-cWS-F-F                             , Ed  3, 1, MLPS -4.26, deficit  1.40, prct   0.00; HL_38168.1,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -5.62, deficit  0.63, prct   0.00; HL_75660.5,  3 NTs, cWW-F                                   , Ed  0, 0, MLPS -5.72, deficit  1.19, prct   0.00; HL_60914.1,  3 NTs, cWW-F                                   , Ed  4, 2, MLPS -6.03, deficit  2.78, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               CAUUUG (   1) MLPS  -6.85 deficit   1.97 prct   0.00 CutScore  79.30;  Ed  0, 0
ans =

    ' HL_38901.2  8P9A C 1359 G 1364'

 scores better against   7 groups: HL_65313.1,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -5.49, deficit  1.10, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  1, 1, MLPS -5.58, deficit  0.06, prct   0.00; HL_29966.1,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -5.61, deficit  1.20, prct   0.00; HL_48417.5,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -5.94, deficit  0.00, prct   0.00; HL_56334.1,  3 NTs, cWW-F                                   , Ed  1, 1, MLPS -6.47, deficit  1.35, prct   0.00; 
Better:  16 Equal:   0 Score 0.00               GGAAAC (   1) MLPS  -7.40 deficit   2.51 prct   0.00 CutScore  73.57;  Ed  0, 0
ans =

    ' HL_38901.2  4KR9 G   19 C   24'

 scores better against  16 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -2.54, deficit  0.79, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.20, deficit  0.00, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  0, 0, MLPS -4.33, deficit  0.00, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.48, deficit -0.62, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -5.82, deficit  0.07, prct   0.00; 
Group  55 is from HL_21372.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_21372.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-F-cSH-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00            AUUCGUAAU (   1) MLPS  -8.25 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_21372.1  1QF6 A   31 U   39'

 scores better against   1 groups: HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 1, MLPS -7.45, deficit  2.70, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            UUUCGUGUG (   1) MLPS  -8.92 deficit   0.66 prct   0.00 CutScore  94.52;  Ed  0, 0
ans =

    ' HL_21372.1  1KOG U   82 G   90'

 scores better against   1 groups: HL_80599.2,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  2, 2, MLPS -7.42, deficit  2.12, prct   0.00; 
Group 195 is from HL_80411.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80411.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-cSH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00          CAGCCCGGUAG (   1) MLPS  -8.27 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80411.1  1H4S C   13 G   22'

 scores better against   1 groups: HL_93616.2,  8 NTs, cWW-cWS-F-F-F-F                         , Ed  0, 0, MLPS -7.35, deficit  1.47, prct   0.00; 
Group  65 is from HL_25847.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_25847.2
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-F-cSH-tHW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GUAACUAUAAC (   1) MLPS  -4.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_25847.2  9DFE G 1910 C 1920'

 matches the original group, cWW-F-cSH-tHW-F-F-F
Better:   0 Equal:   0 Score 1.00          GUAACUAUAAC (   1) MLPS  -4.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_25847.2  5J7L G 1910 C 1920'

 matches the original group, cWW-F-cSH-tHW-F-F-F
Better:   0 Equal:   0 Score 1.00          GUAACUAUGAC (   1) MLPS  -4.83 deficit   0.49 prct   0.00 CutScore  97.55;  Ed  0, 0
ans =

    ' HL_25847.2  8CRE G 2231 C 2241'

 matches the original group, cWW-F-cSH-tHW-F-F-F
Group   1 is from HL_00317.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_00317.1
This group is considered to be structured ***************************
Number of NTs: 19  Signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UGGCCUUUCUUAAAAAAAAA (   1) MLPS -15.16 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_00317.1  6SVS U   50 A   69'

 matches the original group, cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Group 145 is from HL_59564.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_59564.1
This group is considered to be structured ***************************
Number of NTs: 20  Signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00 UGGCCUUUCUUAAAAAAAAA (   1) MLPS -15.54 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_59564.1  4PLX U   47 A   66'

 scores better against   1 groups: HL_00317.1, 19 NTs, cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F   , Ed  0, 0, MLPS -15.16, deficit  0.00, prct   0.00; 
Group 126 is from HL_50860.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50860.2
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-F-cWH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GACGGAAAU (   1) MLPS  -4.63 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50860.2  9DFE G 2304 U 2312'

 matches the original group, cWW-F-cWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AACAGAAAU (   1) MLPS  -4.90 deficit   0.27 prct   0.00 CutScore  98.35;  Ed  0, 0
ans =

    ' HL_50860.2  8CRE A 2645 U 2653'

 matches the original group, cWW-F-cWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AACAGAAAU (   1) MLPS  -4.90 deficit   0.27 prct   0.00 CutScore  98.35;  Ed  0, 0
ans =

    ' HL_50860.2  8P9A A 2673 U 2681'

 matches the original group, cWW-F-cWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUCGGACAU (   1) MLPS  -6.32 deficit   1.69 prct   0.00 CutScore  89.50;  Ed  0, 0
ans =

    ' HL_50860.2  5J7L G 2304 U 2312'

 matches the original group, cWW-F-cWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUGGAAAU (   1) MLPS  -6.52 deficit   1.89 prct   0.00 CutScore  88.25;  Ed  0, 0
ans =

    ' HL_50860.2  7A0S G 2283 U 2291'

 matches the original group, cWW-F-cWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GACAGAGAC (   1) MLPS  -6.74 deficit   2.11 prct   0.00 CutScore  86.85;  Ed  0, 0
ans =

    ' HL_50860.2  4V9F G 2338 C 2346'

 matches the original group, cWW-F-cWH-F-F-F-F
Group  30 is from HL_10456.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_10456.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   CAUCAGGGGAGGAAUCGG (   1) MLPS  -7.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_10456.1  3D0U C   35 G   52'

 matches the original group, cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00   CAUCAGGGGAGGAAUCGG (   1) MLPS  -7.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_10456.1  3DIL C   38 G   55'

 matches the original group, cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
Group 214 is from HL_86109.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_86109.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-F-tWH-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        GGGCGGUGGGAGC (   1) MLPS  -6.73 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86109.1  4MGN G   51 C   63'

 matches the original group, cWW-F-tWH-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        GGGCGGUGGGAGC (   1) MLPS  -6.73 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86109.1  4JRC G   51 C   63'

 matches the original group, cWW-F-tWH-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        GGAUAGUGAAAGC (   1) MLPS  -9.43 deficit   2.70 prct   0.00 CutScore  86.49;  Ed  0, 0
ans =

    ' HL_86109.1  4LCK G   52 C   64'

 matches the original group, cWW-F-tWH-F-F-F-F-F-F-F
Group 175 is from HL_73247.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_73247.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      CAUCCGAGUUGCAAG (   1) MLPS  -8.54 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73247.1  6D3P C   13 G   27'

 matches the original group, cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00    CAUACACGAGUUGCAAG (   1) MLPS  -8.57 deficit   0.04 prct   0.00 CutScore  99.84;  Ed  0, 0
ans =

    ' HL_73247.1  7JJU C   14 G   30'

 matches the original group, cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00    CAUACACGAGUUGCAAG (   1) MLPS  -8.57 deficit   0.04 prct   0.00 CutScore  99.84;  Ed  0, 0
ans =

    ' HL_73247.1  7JJU C   14 G   30'

 matches the original group, cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
Group  80 is from HL_31581.6 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_31581.6
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-cHS-F-F-F-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00         CAUUGCACUCCG (   1) MLPS  -7.15 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31581.6  4PR6 C  147 G  158'

 scores better against   1 groups: HL_33074.4, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  0, 0, MLPS -1.88, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00         CAUUGCACUCCG (   1) MLPS  -7.15 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_31581.6  4PRF C  147 G  158'

 scores better against   1 groups: HL_33074.4, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  0, 0, MLPS -1.88, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00        UAUUGCAGUACCG (   1) MLPS  -9.25 deficit   2.10 prct   0.00 CutScore  89.50;  Ed  0, 0
ans =

    ' HL_31581.6  6F4G U    8 G   20'

 matches the original group, cWW-cHS-F-F-F-cWW-F-F-F
Group 121 is from HL_50318.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50318.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-cSH-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CGUUAAUG (   1) MLPS  -6.02 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50318.1  4WF9 C  587 G  594'

 matches the original group, cWW-cSH-F-F
Group 236 is from HL_93383.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_93383.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-cSH-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GCCCUAAGC (   1) MLPS  -3.48 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93383.1  5K7D G   33 C   41'

 matches the original group, cWW-cSH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCUCAAAGC (   1) MLPS  -3.48 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93383.1  6UFJ G   33 C   41'

 matches the original group, cWW-cSH-F-F-F-F-F-F
Group 243 is from HL_97756.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_97756.2
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      ACCCCAUGCCGAACU (   1) MLPS  -4.78 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_97756.2  5NS3 A   34 U   48'

 matches the original group, cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00      ACCCCAUGCCGAACU (   1) MLPS  -4.78 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_97756.2  5J7L A   34 U   48'

 matches the original group, cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00      ACCCCAUGCCGAACU (   1) MLPS  -4.78 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_97756.2  1MJI A   34 U   48'

 matches the original group, cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00      UUCCCAUGCCGAACA (   1) MLPS  -5.12 deficit   0.34 prct   0.00 CutScore  98.65;  Ed  0, 0
ans =

    ' HL_97756.2  4WF9 U   32 A   46'

 matches the original group, cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00      UUCCCAUUCCGAACA (   1) MLPS  -6.21 deficit   1.44 prct   0.00 CutScore  94.26;  Ed  0, 0
ans =

    ' HL_97756.2  9DFE U   34 A   48'

 matches the original group, cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00      UACCCAUCCCGAACA (   1) MLPS  -6.73 deficit   1.95 prct   0.00 CutScore  92.22;  Ed  0, 0
ans =

    ' HL_97756.2  4V9F U   33 A   47'

 matches the original group, cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Group  26 is from HL_08602.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_08602.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-cSS-F-cSS-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        CAAUCCGCUCUAG (   1) MLPS  -9.33 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_08602.1  4WFL C   42 G   54'

 matches the original group, cWW-cSS-F-cSS-F-F-F-F-F
Group 155 is from HL_64690.6 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_64690.6
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cSW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GAAGACGAC (   1) MLPS  -6.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_64690.6  5J7L G 2819 C 2827'

 matches the original group, cWW-cSW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUAUACGAC (   1) MLPS  -7.01 deficit   0.59 prct   0.00 CutScore  95.42;  Ed  0, 0
ans =

    ' HL_64690.6  8P9A G 3303 C 3311'

 matches the original group, cWW-cSW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAAGACCAC (   1) MLPS  -7.21 deficit   0.79 prct   0.00 CutScore  93.85;  Ed  0, 0
ans =

    ' HL_64690.6  7A0S G 2794 C 2802'

 matches the original group, cWW-cSW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GAAGACCAC (   1) MLPS  -7.21 deficit   0.79 prct   0.00 CutScore  93.85;  Ed  0, 0
ans =

    ' HL_64690.6  9DFE G 2819 C 2827'

 matches the original group, cWW-cSW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GCAUACGAC (   1) MLPS  -7.52 deficit   1.10 prct   0.00 CutScore  91.43;  Ed  0, 0
ans =

    ' HL_64690.6  8CRE G 3268 C 3276'

 matches the original group, cWW-cSW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AAAGAUGAU (   1) MLPS  -7.61 deficit   1.18 prct   0.00 CutScore  90.76;  Ed  0, 0
ans =

    ' HL_64690.6  4WF9 A 2839 U 2847'

 matches the original group, cWW-cSW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUACAAGAC (   1) MLPS  -9.58 deficit   3.15 prct   0.00 CutScore  75.41;  Ed  0, 0
ans =

    ' HL_64690.6  4V9F G 2836 C 2844'

 matches the original group, cWW-cSW-F-F-F-F
Better:   8 Equal:   0 Score 0.00            CCUUUCACG (   1) MLPS -13.17 deficit   6.75 prct   0.00 CutScore  47.37;  Ed  0, 0
ans =

    ' HL_64690.6  2DER C   31 G   39'

 scores better against   8 groups: HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -7.75, deficit  2.15, prct   0.00; HL_50006.2,  4 NTs, cWW-F-F                                 , Ed  0, 0, MLPS -8.33, deficit  0.10, prct   0.00; HL_80362.1,  5 NTs, cWW-F-F-F                               , Ed  2, 2, MLPS -8.68, deficit  1.61, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -9.17, deficit  3.60, prct   0.00; HL_50537.6,  5 NTs, cWW-F-F-F                               , Ed  3, 3, MLPS -9.31, deficit  1.22, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CCCUUUUGG (   1) MLPS -13.45 deficit   7.03 prct   0.00 CutScore  45.19;  Ed  0, 0
ans =

    ' HL_64690.6  8CRE C  487 G  495'

 scores better against   1 groups: HL_20535.2,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -12.15, deficit  1.75, prct   0.00; 
Group 149 is from HL_60293.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_60293.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UGUGGAAGGAGUGGCUGGGUUG (   1) MLPS  -8.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_60293.1  5DEA U    8 G   29'

 matches the original group, cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
Better:   0 Equal:   0 Score 1.00 UGUGGAAGGAGUGGCUGGGUUG (   1) MLPS  -8.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_60293.1  5DE8 U    8 G   29'

 matches the original group, cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
Group  89 is from HL_35354.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_35354.1
This group is considered to be structured ***************************
Number of NTs: 21  Signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 AGGAAGGAUUGGUAUGUGGUAUAU (   1) MLPS -10.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_35354.1  6E8S A    8 U   31'

 matches the original group, cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH
Group  44 is from HL_16991.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_16991.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWH-cWH-F-cWH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         UGUGGAGGAGUA (   1) MLPS  -6.48 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_16991.1  8EYU U   26 A   37'

 matches the original group, cWW-cWH-cWH-F-cWH-F
Group 125 is from HL_50851.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_50851.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-cWH-cWH-cWH-cWH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         GAGGCGGUUGGU (   1) MLPS  -4.55 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_50851.1  8UTG G    8 U   19'

 matches the original group, cWW-cWH-cWH-cWH-cWH-F
Group 112 is from HL_46501.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_46501.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-cWS
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CUUAG (   1) MLPS  -4.32 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_46501.1  4M4O C   32 G   36'

 matches the original group, cWW-cWS
Better:   1 Equal:   0 Score 0.00               CUGAAG (   1) MLPS  -5.02 deficit   0.69 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_46501.1  3DD2 C   11 G   16'

 scores better against   1 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; 
Group  54 is from HL_20811.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_20811.4
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-cWS-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00            CAGUGGUAG (   1) MLPS  -7.52 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20811.4  6JXM C   13 G   21'

 scores better against   2 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -7.13, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -7.34, deficit  0.00, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CAGUGGUAG (   1) MLPS  -7.52 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20811.4  7UQ6 C   13 G   21'

 scores better against   2 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -7.13, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -7.34, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUUGGGAG (   1) MLPS  -7.66 deficit   0.14 prct   0.00 CutScore  98.69;  Ed  0, 0
ans =

    ' HL_20811.4  5AXM C   13 G   22'

 scores better against   1 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -7.38, deficit  0.25, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUUGGUAG (   1) MLPS  -7.77 deficit   0.25 prct   0.00 CutScore  97.63;  Ed  0, 0
ans =

    ' HL_20811.4  1QF6 C   13 G   22'

 scores better against   1 groups: HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -7.70, deficit  0.35, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CAAUGGUAG (   1) MLPS  -8.71 deficit   1.19 prct   0.00 CutScore  88.59;  Ed  0, 0
ans =

    ' HL_20811.4  2AZX C  513 G  522'

 scores better against   2 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -8.23, deficit  1.10, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.68, deficit  1.34, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGCUGGGAG (   1) MLPS  -8.75 deficit   1.23 prct   0.00 CutScore  88.16;  Ed  0, 0
ans =

    ' HL_20811.4  7EQJ C   13 G   22'

 scores better against   1 groups: HL_49941.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.91, deficit -0.16, prct   0.00; 
Better:   3 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.87 deficit   1.35 prct   0.00 CutScore  87.09;  Ed  0, 0
ans =

    ' HL_20811.4  7MRL C   13 G   22'

 scores better against   3 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.35, deficit  1.01, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -8.82, deficit  1.68, prct   0.00; 
Better:   3 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.87 deficit   1.35 prct   0.00 CutScore  87.09;  Ed  0, 0
ans =

    ' HL_20811.4  7LYF C   13 G   22'

 scores better against   3 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.35, deficit  1.01, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -8.82, deficit  1.68, prct   0.00; 
Better:   3 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.87 deficit   1.35 prct   0.00 CutScore  87.09;  Ed  0, 0
ans =

    ' HL_20811.4  8SP9 C   13 G   22'

 scores better against   3 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.35, deficit  1.01, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -8.82, deficit  1.68, prct   0.00; 
Better:   3 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.87 deficit   1.35 prct   0.00 CutScore  87.09;  Ed  0, 0
ans =

    ' HL_20811.4  1FIR C   13 G   22'

 scores better against   3 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.35, deficit  1.01, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -8.82, deficit  1.68, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           CAGCCGGUAG (   1) MLPS  -9.96 deficit   2.44 prct   0.00 CutScore  76.55;  Ed  0, 0
ans =

    ' HL_20811.4  4V90 C   13 G   22'

 scores better against   2 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -7.79, deficit  1.10, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -9.01, deficit  1.66, prct   0.00; 
Better:  22 Equal:   0 Score 0.00               CUGAAG (   1) MLPS -11.27 deficit   3.75 prct   0.00 CutScore  63.99;  Ed  0, 0
ans =

    ' HL_20811.4  5DO4 C   11 G   16'

 scores better against  22 groups: HL_89199.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -4.77, deficit  2.40, prct   0.00; HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  0, 0, MLPS -5.02, deficit  0.69, prct   0.00; HL_38901.2,  5 NTs, cWW-F-cSH                               , Ed  2, 2, MLPS -5.29, deficit  0.40, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -5.78, deficit  1.72, prct   0.00; HL_69752.2,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -6.16, deficit  0.69, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            UAACGGUAG (   1) MLPS -11.53 deficit   4.01 prct   0.00 CutScore  61.59;  Ed  0, 0
ans =

    ' HL_20811.4  3AL0 U   13 G   22'

 scores better against   2 groups: HL_77600.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 3, MLPS -10.91, deficit  1.17, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  2, 2, MLPS -11.22, deficit  4.09, prct   0.00; 
Better:   8 Equal:   0 Score 0.00          CAAUUGGAUAG (   1) MLPS -14.27 deficit   6.75 prct   0.00 CutScore  35.28;  Ed  0, 0
ans =

    ' HL_20811.4  5B63 C  913 G  923'

 scores better against   8 groups: HL_94376.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  5, 3, MLPS -11.64, deficit  3.87, prct   0.00; HL_23010.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 4, MLPS -12.20, deficit  4.39, prct   0.00; HL_04642.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 3, MLPS -12.45, deficit  4.58, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -13.08, deficit  5.74, prct   0.00; HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 4, MLPS -13.16, deficit  6.44, prct   0.00; 
Group 110 is from HL_45175.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_45175.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-cWS-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            CAGUGGUAG (   1) MLPS  -7.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_45175.1  3EPH C   13 G   22'

 matches the original group, cWW-cWS-F-F
Better:   3 Equal:   0 Score 0.00           CAGUUGGUAG (   1) MLPS  -7.86 deficit   0.73 prct   0.00 CutScore  95.36;  Ed  0, 0
ans =

    ' HL_45175.1  3TUP C   13 G   22'

 scores better against   3 groups: HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -7.70, deficit  0.35, prct   0.00; HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  0, 0, MLPS -7.77, deficit  0.25, prct   0.00; HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -7.79, deficit  1.10, prct   0.00; 
Better:   2 Equal:   0 Score 0.00            CAGGGGUAG (   1) MLPS  -8.23 deficit   1.10 prct   0.00 CutScore  92.98;  Ed  0, 0
ans =

    ' HL_45175.1  5WWT C   13 G   22'

 scores better against   2 groups: HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  1, 1, MLPS -7.41, deficit -0.11, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  1, 1, MLPS -7.43, deficit  0.08, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.82 deficit   1.68 prct   0.00 CutScore  89.26;  Ed  0, 0
ans =

    ' HL_45175.1  3FOZ C   13 G   22'

 scores better against   2 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; HL_66853.7,  7 NTs, cWW-cWS-F-cSH                           , Ed  0, 0, MLPS -8.35, deficit  1.01, prct   0.00; 
Better:   0 Equal:   0 Score 1.00           UAAUGGUCAG (   1) MLPS -10.71 deficit   3.57 prct   0.00 CutScore  77.18;  Ed  0, 0
ans =

    ' HL_45175.1  1IL2 U  913 G  922'

 matches the original group, cWW-cWS-F-F
Group 184 is from HL_76094.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_76094.1
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-cWS-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00                CAAUG (   1) MLPS  -2.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_76094.1  9E7E C   20 G   24'

 matches the original group, cWW-cWS-F-F
Group  63 is from HL_24792.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_24792.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-cWS-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GCCCGUUAUC (   1) MLPS  -6.42 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_24792.1  6XJQ G   26 C   35'

 matches the original group, cWW-cWS-F-F-F
Group 239 is from HL_93616.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_93616.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWS-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          CAGCCUGGUAG (   1) MLPS  -5.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93616.2  9DFC C   13 G   22'

 matches the original group, cWW-cWS-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCCUGGUAG (   1) MLPS  -5.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93616.2  6CFJ C   13 G   22'

 matches the original group, cWW-cWS-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCCUGGUAG (   1) MLPS  -5.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93616.2  4V9Q C   13 G   22'

 matches the original group, cWW-cWS-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCCUGGUAG (   1) MLPS  -5.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93616.2  1J1U C  513 G  523'

 matches the original group, cWW-cWS-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCCUGGUAG (   1) MLPS  -5.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93616.2  4TUE C   12 G   22'

 matches the original group, cWW-cWS-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCCUGGUAG (   1) MLPS  -5.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_93616.2  4WT8 C   13 G   23'

 matches the original group, cWW-cWS-F-F-F-F
Better:   0 Equal:   0 Score 1.00          CAGCCCGGUAG (   1) MLPS  -7.35 deficit   1.47 prct   0.00 CutScore  92.67;  Ed  0, 0
ans =

    ' HL_93616.2  5E81 C   13 G   23'

 matches the original group, cWW-cWS-F-F-F-F
Better:   2 Equal:   0 Score 0.00         UAGCCAGGACAG (   1) MLPS -14.99 deficit   9.11 prct   0.00 CutScore  54.47;  Ed  0, 0
ans =

    ' HL_93616.2  2ZUE U  913 G  922'

 scores better against   2 groups: HL_09260.2,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -11.98, deficit  1.74, prct   0.00; HL_01255.1,  8 NTs, F-F-F-F-F-F-F-F                         , Ed  4, 3, MLPS -12.63, deficit  4.30, prct   0.00; 
Group 160 is from HL_66853.7 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_66853.7
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-cWS-F-cSH
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00            CAGUGGUAG (   1) MLPS  -7.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_66853.7  4MGN C   13 G   21'

 scores better against   1 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -7.13, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CAGUGGUAG (   1) MLPS  -7.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_66853.7  7E8O C   13 G   21'

 scores better against   1 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -7.13, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CAGUGGUAG (   1) MLPS  -7.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_66853.7  7UZ0 C   13 G   21'

 scores better against   1 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  0, 0, MLPS -7.13, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.35 deficit   1.01 prct   0.00 CutScore  93.84;  Ed  0, 0
ans =

    ' HL_66853.7  8UO6 C   13 G   22'

 scores better against   1 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.35 deficit   1.01 prct   0.00 CutScore  93.84;  Ed  0, 0
ans =

    ' HL_66853.7  8UO6 C   13 G   22'

 scores better against   1 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.35 deficit   1.01 prct   0.00 CutScore  93.84;  Ed  0, 0
ans =

    ' HL_66853.7  8S95 C   13 G   22'

 scores better against   1 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.35 deficit   1.01 prct   0.00 CutScore  93.84;  Ed  0, 0
ans =

    ' HL_66853.7  4YCO C   13 G   22'

 scores better against   1 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           CAGUCGGUAG (   1) MLPS  -8.35 deficit   1.01 prct   0.00 CutScore  93.84;  Ed  0, 0
ans =

    ' HL_66853.7  4WJ4 C   13 G   22'

 scores better against   1 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  0, 0, MLPS -6.69, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CAAUGGUAG (   1) MLPS  -8.68 deficit   1.34 prct   0.00 CutScore  91.85;  Ed  0, 0
ans =

    ' HL_66853.7  6CU1 C   58 G   66'

 scores better against   1 groups: HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -8.23, deficit  1.10, prct   0.00; 
Better:   3 Equal:   0 Score 0.00           CAAUUGGUAG (   1) MLPS  -9.03 deficit   1.69 prct   0.00 CutScore  89.68;  Ed  0, 0
ans =

    ' HL_66853.7  4YCP C   13 G   22'

 scores better against   3 groups: HL_58224.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -8.89, deficit  2.20, prct   0.00; HL_20811.4,  5 NTs, cWW-cWS-F                               , Ed  1, 1, MLPS -8.96, deficit  1.44, prct   0.00; HL_45175.1,  6 NTs, cWW-cWS-F-F                             , Ed  1, 1, MLPS -8.96, deficit  1.83, prct   0.00; 
Better:   3 Equal:   0 Score 0.00          CAGUCGGUUAG (   1) MLPS -11.30 deficit   3.96 prct   0.00 CutScore  75.82;  Ed  0, 0
ans =

    ' HL_66853.7  6UGG C   12 G   22'

 scores better against   3 groups: HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -8.33, deficit  1.61, prct   0.00; HL_04642.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -8.38, deficit  0.51, prct   0.00; HL_23010.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 3, MLPS -11.11, deficit  3.30, prct   0.00; 
Group  38 is from HL_13971.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_13971.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       UUCCCGUCCGAUCA (   1) MLPS  -6.31 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_13971.1  8P9A U   32 A   45'

 matches the original group, cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
Better:   0 Equal:   0 Score 1.00       UCCCCGUUCGAUCA (   1) MLPS  -6.31 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_13971.1  8OI5 U   32 A   45'

 matches the original group, cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
Group  14 is from HL_04725.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_04725.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWS-cWW-cWW-cWS
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         GUUACUUAGUUC (   1) MLPS  -5.03 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04725.1  4M4O G   28 C   39'

 matches the original group, cWW-cWS-cWW-cWW-cWS
Better:   0 Equal:   0 Score 1.00         GUUACUUAGUUC (   1) MLPS  -5.03 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04725.1  4M6D G   28 C   39'

 matches the original group, cWW-cWS-cWW-cWW-cWS
Group 166 is from HL_68767.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_68767.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWS-tSH-cWS-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        GGAAUGGGUAGAC (   1) MLPS  -8.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_68767.1  2BTE G   12 C   23'

 matches the original group, cWW-cWS-tSH-cWS-F
Better:   0 Equal:   0 Score 1.00        GGAAUCGGUAGAC (   1) MLPS  -9.39 deficit   1.10 prct   0.00 CutScore  94.18;  Ed  0, 0
ans =

    ' HL_68767.1  3ZGZ G   12 C   23'

 matches the original group, cWW-cWS-tSH-cWS-F
Better:   0 Equal:   0 Score 1.00        GAAAUCGGUAAAC (   1) MLPS -11.07 deficit   2.78 prct   0.00 CutScore  85.30;  Ed  0, 0
ans =

    ' HL_68767.1  5AH5 G   12 C   23'

 matches the original group, cWW-cWS-tSH-cWS-F
Group 221 is from HL_88205.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_88205.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-cWS-tSW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           ACGUGCAAAU (   1) MLPS  -5.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_88205.2  8P9A A  876 U  885'

 matches the original group, cWW-cWS-tSW-F-F
Better:   0 Equal:   0 Score 1.00           ACGUGCAAAU (   1) MLPS  -5.72 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_88205.2  8CRE A  872 U  881'

 matches the original group, cWW-cWS-tSW-F-F
Better:   0 Equal:   0 Score 1.00           UGUUGAAAAA (   1) MLPS  -5.90 deficit   0.18 prct   0.00 CutScore  98.80;  Ed  0, 0
ans =

    ' HL_88205.2  5J7L U  744 A  753'

 matches the original group, cWW-cWS-tSW-F-F
Better:   0 Equal:   0 Score 1.00           CGUUGAAAAG (   1) MLPS  -6.10 deficit   0.38 prct   0.00 CutScore  97.47;  Ed  0, 0
ans =

    ' HL_88205.2  4WF9 C  789 G  798'

 matches the original group, cWW-cWS-tSW-F-F
Better:   0 Equal:   0 Score 1.00           GGAUGCAAAC (   1) MLPS  -6.24 deficit   0.52 prct   0.00 CutScore  96.51;  Ed  0, 0
ans =

    ' HL_88205.2  9DFE G  744 C  753'

 matches the original group, cWW-cWS-tSW-F-F
Better:   0 Equal:   0 Score 1.00           UGCUGAAACA (   1) MLPS  -8.02 deficit   2.30 prct   0.00 CutScore  84.67;  Ed  0, 0
ans =

    ' HL_88205.2  7A0S U  757 A  766'

 matches the original group, cWW-cWS-tSW-F-F
Better:   0 Equal:   0 Score 1.00           UCCUACAAUA (   1) MLPS  -9.57 deficit   3.85 prct   0.00 CutScore  74.34;  Ed  0, 0
ans =

    ' HL_88205.2  4V9F U  837 A  846'

 matches the original group, cWW-cWS-tSW-F-F
Group 100 is from HL_38808.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_38808.1
This group is considered to be structured ***************************
Number of NTs:  4  Signature: cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            AUUCCCAUU (   1) MLPS  -8.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38808.1  4QEI A   31 U   39'

 matches the original group, cWW-cWW
Better:   0 Equal:   0 Score 1.00            AUUCCCAUU (   1) MLPS  -8.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38808.1  5E6M A   31 U   39'

 matches the original group, cWW-cWW
Better:   6 Equal:   0 Score 0.00            ACUGCAGAU (   1) MLPS -11.58 deficit   2.67 prct   0.00 CutScore  79.34;  Ed  0, 0
ans =

    ' HL_38808.1  2DU3 A  930 U  938'

 scores better against   6 groups: HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  0, 0, MLPS -5.70, deficit  0.53, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  1, 1, MLPS -5.91, deficit  0.34, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  1, 1, MLPS -7.10, deficit  2.35, prct   0.00; HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  3, 3, MLPS -9.50, deficit  3.30, prct   0.00; HL_33983.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -9.96, deficit  3.39, prct   0.00; 
Better:   2 Equal:   0 Score 0.00           CUAAUUAGUG (   1) MLPS -12.57 deficit   3.66 prct   0.00 CutScore  71.67;  Ed  0, 0
ans =

    ' HL_38808.1  6ZDP C 1303 G 1312'

 scores better against   2 groups: HL_98864.1, 10 NTs, cWW-tWH-F-F-F-F-F-F                     , Ed  4, 2, MLPS -11.67, deficit  7.04, prct   0.00; HL_98252.1,  8 NTs, cWW-tWW-F-F-F-F                         , Ed  5, 3, MLPS -11.89, deficit  4.60, prct   0.00; 
Group  42 is from HL_15802.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_15802.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            ACUCUGGAU (   1) MLPS  -6.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_15802.1  3AL0 A   31 U   39'

 matches the original group, cWW-cWW-F-F-F
Group  66 is from HL_25967.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_25967.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              GUUUAUC (   1) MLPS  -4.44 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_25967.2  8P9A G 1719 C 1725'

 matches the original group, cWW-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00              GUUUAUC (   1) MLPS  -4.44 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_25967.2  8CRE G 1715 C 1721'

 matches the original group, cWW-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00             CACCUUUG (   1) MLPS  -9.34 deficit   4.91 prct   0.00 CutScore  60.28;  Ed  0, 0
ans =

    ' HL_25967.2  8P9A C 1759 G 1766'

 matches the original group, cWW-cWW-F-F-F
Group  46 is from HL_18565.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_18565.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            ACUGAAGAU (   1) MLPS  -5.17 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_18565.1  5WT1 A   31 U   39'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            ACUGCAGAU (   1) MLPS  -5.70 deficit   0.53 prct   0.00 CutScore  96.80;  Ed  0, 0
ans =

    ' HL_18565.1  2ZZN A   31 U   39'

 matches the original group, cWW-cWW-F-F-F-F
Group  51 is from HL_20743.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_20743.5
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GGAUAUGGC (   1) MLPS  -5.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20743.5  5KPY G   31 C   39'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGAUAUGGC (   1) MLPS  -5.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20743.5  1Y27 G   31 C   39'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGAUAUGGC (   1) MLPS  -5.37 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20743.5  4FEN G   31 C   39'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GGAUAUAGC (   1) MLPS  -5.68 deficit   0.32 prct   0.00 CutScore  97.89;  Ed  0, 0
ans =

    ' HL_20743.5  3RKF G   31 C   39'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AAAUAUGGU (   1) MLPS  -5.77 deficit   0.40 prct   0.00 CutScore  97.33;  Ed  0, 0
ans =

    ' HL_20743.5  6P2H A   31 U   39'

 matches the original group, cWW-cWW-F-F-F-F
Better:   1 Equal:   0 Score 0.00            CAUAAUGGG (   1) MLPS  -6.59 deficit   1.22 prct   0.00 CutScore  91.87;  Ed  0, 0
ans =

    ' HL_20743.5  3SKL C   38 G   46'

 scores better against   1 groups: HL_84299.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -5.49, deficit  0.20, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            CAUAAUGGG (   1) MLPS  -6.59 deficit   1.22 prct   0.00 CutScore  91.87;  Ed  0, 0
ans =

    ' HL_20743.5  3SKI C   39 G   47'

 scores better against   1 groups: HL_84299.4,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -5.49, deficit  0.20, prct   0.00; 
Group 252 is from HL_99769.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_99769.3
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GUAGUGGUAUC (   1) MLPS  -8.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_99769.3  5E6M G   12 C   23'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GUAGUGGUAUC (   1) MLPS  -8.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_99769.3  4QEI G   12 C   23'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00         GUAGUGGUAAUC (   1) MLPS -11.62 deficit   2.86 prct   0.00 CutScore  84.33;  Ed  0, 0
ans =

    ' HL_99769.3  2D6F G  912 C  923'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CAAGCUUGCUUG (   1) MLPS -12.92 deficit   4.15 prct   0.00 CutScore  77.23;  Ed  0, 0
ans =

    ' HL_99769.3  4WF9 C  280 G  291'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00         AACGCUUGCGUU (   1) MLPS -14.16 deficit   5.39 prct   0.00 CutScore  70.44;  Ed  0, 0
ans =

    ' HL_99769.3  7A0S A  254 U  265'

 matches the original group, cWW-cWW-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CCCGAAUUGUGG (   1) MLPS -15.00 deficit   6.23 prct   0.00 CutScore  65.82;  Ed  0, 0
ans =

    ' HL_99769.3  6ZDU C 1271 G 1282'

 matches the original group, cWW-cWW-F-F-F-F
Group 218 is from HL_87463.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_87463.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-cWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GUUGGAUAUC (   1) MLPS  -5.61 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_87463.1  4V9F G  390 C  399'

 matches the original group, cWW-cWW-F-F-F-F-F
Group  10 is from HL_04171.7 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_04171.7
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  4LX6 A   30 U   40'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  4XNR A   30 U   40'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  1Y26 A   30 U   40'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  8KEB A   18 U   28'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  3LA5 A   30 U   40'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  5SWD A   30 U   40'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUGAUAUGGUU (   1) MLPS  -5.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_04171.7  3IVN A   21 U   31'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          AUAAUAUGGUU (   1) MLPS  -6.33 deficit   1.10 prct   0.00 CutScore  94.51;  Ed  0, 0
ans =

    ' HL_04171.7  7KVT A   23 U   33'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          UUACCGUAGUA (   1) MLPS  -9.87 deficit   4.64 prct   0.00 CutScore  76.79;  Ed  0, 0
ans =

    ' HL_04171.7  4ATO U   15 A   25'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Group 210 is from HL_85434.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_85434.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-cWW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GGUAUCCCAC (   1) MLPS  -5.59 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_85434.1  8VM9 G   15 C   24'

 matches the original group, cWW-cWW-F-F-F-F-F-F
Group  20 is from HL_07583.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_07583.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-cWW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        AUUAAUACGGUUU (   1) MLPS -13.23 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07583.1  9IWF A   15 U   27'

 matches the original group, cWW-cWW-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00      UGGAAUUGGUAGACA (   1) MLPS -15.13 deficit   1.90 prct   0.00 CutScore  87.30;  Ed  0, 0
ans =

    ' HL_07583.1  4WSM U   11 A   25'

 matches the original group, cWW-cWW-F-F-F-F-F-F-F-F
Group  22 is from HL_07903.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_07903.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-cWW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      GUAUUGCAGUACCUC (   1) MLPS  -9.17 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07903.1  1A9N G    4 C   18'

 matches the original group, cWW-cWW-F-F-F-F-F-F-F-F-F
Group 222 is from HL_88364.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_88364.2
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     UACUUAUUUCCUUUGA (   1) MLPS -10.26 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_88364.2  4JF2 U   28 A   43'

 matches the original group, cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00     UACUUAUUUCCUUUGA (   1) MLPS -10.26 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_88364.2  5D5L U   28 A   43'

 matches the original group, cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00      AUUUUGUUGGUUUCU (   1) MLPS -11.78 deficit   1.52 prct   0.00 CutScore  92.31;  Ed  0, 0
ans =

    ' HL_88364.2  8P9A A  829 U  843'

 matches the original group, cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
Group  16 is from HL_05304.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_05304.3
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-cWW-F-F-tSH-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        AAUGUAAAUACCU (   1) MLPS -10.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_05304.3  8P9A A  520 U  532'

 matches the original group, cWW-cWW-F-F-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        AAUGUAAAUACCU (   1) MLPS -10.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_05304.3  8CRE A  518 U  530'

 matches the original group, cWW-cWW-F-F-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        GAGGUAGCGGUGC (   1) MLPS -12.77 deficit   2.37 prct   0.00 CutScore  87.74;  Ed  0, 0
ans =

    ' HL_05304.3  4WFL G   19 C   31'

 matches the original group, cWW-cWW-F-F-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        AGGUUCGAAUCCU (   1) MLPS -13.87 deficit   3.47 prct   0.00 CutScore  82.06;  Ed  0, 0
ans =

    ' HL_05304.3  5E81 A   51 U   63'

 matches the original group, cWW-cWW-F-F-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00      GGUCAGAAAAUCUAC (   1) MLPS -16.05 deficit   5.65 prct   0.00 CutScore  70.74;  Ed  0, 0
ans =

    ' HL_05304.3  7A0S G 1503 C 1517'

 matches the original group, cWW-cWW-F-F-tSH-F-F-F-F-F
Group  39 is from HL_14757.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_14757.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   CCUGACUUCUAUACUAAG (   1) MLPS  -8.59 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_14757.1  6RTI C   15 G   32'

 matches the original group, cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F
Group 233 is from HL_92488.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_92488.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-cWW-F-cSS-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     GAAACCGCCGAUAUGC (   1) MLPS -12.22 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_92488.1  4UYK G   43 C   58'

 matches the original group, cWW-cWW-F-cSS-F-F-F-F-F-F
Group 215 is from HL_86769.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_86769.4
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-cWW-cSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             AGGGUCAU (   1) MLPS  -8.02 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86769.4  4P5J A   69 U   76'

 matches the original group, cWW-cWW-cSH-F
Better:   0 Equal:   0 Score 1.00             AGGGUCAU (   1) MLPS  -8.02 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86769.4  6MJ0 A   89 U   96'

 matches the original group, cWW-cWW-cSH-F
Better:   0 Equal:   0 Score 1.00             CACCUCAG (   1) MLPS  -8.18 deficit   0.16 prct   0.00 CutScore  98.52;  Ed  0, 0
ans =

    ' HL_86769.4  1ET4 C  219 G  226'

 matches the original group, cWW-cWW-cSH-F
Better:   0 Equal:   0 Score 1.00             GACGAUAU (   1) MLPS  -9.58 deficit   1.56 prct   0.00 CutScore  85.69;  Ed  0, 0
ans =

    ' HL_86769.4  4WF9 G   67 U   74'

 matches the original group, cWW-cWW-cSH-F
Better:   1 Equal:   0 Score 0.00          GGCUCAUAACC (   1) MLPS -15.20 deficit   7.18 prct   0.00 CutScore  34.10;  Ed  0, 0
ans =

    ' HL_86769.4  3AMU G   30 C   40'

 scores better against   1 groups: HL_36684.4, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  3, 3, MLPS -10.83, deficit  3.01, prct   0.00; 
Group 106 is from HL_41902.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_41902.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-cWW-cWH-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         UAGGGAACGGGA (   1) MLPS  -6.62 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_41902.1  6QN3 U   32 A   43'

 matches the original group, cWW-cWW-cWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         UAGGGAACGGGA (   1) MLPS  -6.62 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_41902.1  6QN3 U   32 A   43'

 matches the original group, cWW-cWW-cWH-F-F-F-F-F
Group 148 is from HL_60266.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_60266.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-cWW-tWH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GGAUAAAAGAC (   1) MLPS  -8.26 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_60266.1  6DME G   78 C   88'

 matches the original group, cWW-cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00        GUUUACCAAAAUC (   1) MLPS  -9.74 deficit   1.49 prct   0.00 CutScore  90.67;  Ed  0, 0
ans =

    ' HL_60266.1  7A0S G 1767 C 1779'

 matches the original group, cWW-cWW-tWH-F-F-F-F
Group 200 is from HL_81205.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_81205.3
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       CACUGAGACACGGG (   1) MLPS  -5.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81205.3  4LFB C  320 G  333'

 matches the original group, cWW-cWW-tWH-F-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00       AACUGAGACACGGU (   1) MLPS  -5.78 deficit   0.00 prct   0.00 CutScore  99.98;  Ed  0, 0
ans =

    ' HL_81205.3  5J7L A  320 U  333'

 matches the original group, cWW-cWW-tWH-F-tWH-F-F-F-F-F
Group 159 is from HL_66482.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_66482.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   CCAUCCGAGUUGCAAGAG (   1) MLPS -11.38 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_66482.1  6D3P C   12 G   29'

 matches the original group, cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F
Group 227 is from HL_89881.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_89881.5
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tHW-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          UUUGAUCCUGG (   1) MLPS  -4.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_89881.5  4LFB U   12 G   22'

 matches the original group, cWW-tHW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GUUGAUCCUGC (   1) MLPS  -5.14 deficit   0.32 prct   0.00 CutScore  98.39;  Ed  0, 0
ans =

    ' HL_89881.5  8CRE G    7 C   17'

 matches the original group, cWW-tHW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          GUUGAUCCUGC (   1) MLPS  -5.14 deficit   0.32 prct   0.00 CutScore  98.39;  Ed  0, 0
ans =

    ' HL_89881.5  8P9A G    7 C   17'

 matches the original group, cWW-tHW-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00          UUUGAUCAUGG (   1) MLPS  -5.67 deficit   0.85 prct   0.00 CutScore  95.76;  Ed  0, 0
ans =

    ' HL_89881.5  5J7L U   12 G   22'

 matches the original group, cWW-tHW-F-F-F-F-F-F
Group  34 is from HL_12870.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_12870.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-tHW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        GUCCUUGGGAAAC (   1) MLPS  -7.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_12870.1  2ZY6 G   12 C   24'

 matches the original group, cWW-tHW-F-F-F-F-F-F-F-F-F
Group  52 is from HL_20751.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_20751.2
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-tHW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       CAGGGGAGGAAUCG (   1) MLPS  -8.62 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20751.2  3D0U C   38 G   51'

 matches the original group, cWW-tHW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00       CAGGGGAGGAAUCG (   1) MLPS  -8.62 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_20751.2  3DIL C   41 G   54'

 matches the original group, cWW-tHW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00        GACGGGGAGUUGU (   1) MLPS -13.24 deficit   4.62 prct   0.00 CutScore  76.04;  Ed  0, 0
ans =

    ' HL_20751.2  3SUX G   37 U   49'

 matches the original group, cWW-tHW-F-F-F-F-F-F-F-F-F
Group 152 is from HL_62934.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_62934.1
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-tSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               CAACCG (   1) MLPS  -5.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_62934.1  5J7L C  225 G  230'

 matches the original group, cWW-tSH-F
Better:   0 Equal:   0 Score 1.00              CGCAUAG (   1) MLPS  -6.15 deficit   0.72 prct   0.00 CutScore  92.47;  Ed  0, 0
ans =

    ' HL_62934.1  8K0K C   42 G   48'

 matches the original group, cWW-tSH-F
Group 198 is from HL_80922.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_80922.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-tSH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   3 Equal:   0 Score 0.00              GAGUAUC (   1) MLPS  -7.56 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_80922.2  4V9F G  670 C  676'

 scores better against   3 groups: HL_30068.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -5.66, deficit -0.39, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.13, deficit  2.07, prct   0.00; HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -7.40, deficit  2.06, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              CGAAUAG (   1) MLPS  -7.98 deficit   0.42 prct   0.00 CutScore  95.61;  Ed  0, 0
ans =

    ' HL_80922.2  5J7L C  611 G  617'

 scores better against   6 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -5.83, deficit  4.07, prct   0.00; HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.44, deficit  0.69, prct   0.00; HL_51447.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -7.19, deficit  2.20, prct   0.00; HL_62934.1,  6 NTs, cWW-tSH-F                               , Ed  1, 1, MLPS -7.25, deficit  1.81, prct   0.00; HL_49922.4,  5 NTs, cWW-F-F-F                               , Ed  3, 2, MLPS -7.27, deficit  3.21, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            ACUACGGAU (   1) MLPS -11.39 deficit   3.83 prct   0.00 CutScore  59.71;  Ed  0, 0
ans =

    ' HL_80922.2  2B3J A   31 U   39'

 scores better against   5 groups: HL_15802.1,  7 NTs, cWW-cWW-F-F-F                           , Ed  2, 2, MLPS -8.40, deficit  2.20, prct   0.00; HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  5, 3, MLPS -9.98, deficit  4.41, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -10.31, deficit  4.73, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  2, 2, MLPS -10.67, deficit  5.51, prct   0.00; HL_87553.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -10.86, deficit  2.13, prct   0.00; 
Group  19 is from HL_07480.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_07480.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tSH-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          AAAGCGGUUAU (   1) MLPS  -7.24 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07480.2  1U0B A   12 U   23'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00          AAAGCGGUUAU (   1) MLPS  -7.24 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07480.2  9MTS A   12 U   23'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00          AAAGCGGUUAU (   1) MLPS  -7.24 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_07480.2  1B23 A   12 U   23'

 matches the original group, cWW-tSH-F-F-F
Group  95 is from HL_37369.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_37369.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tSH-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              CGGCGAG (   1) MLPS  -3.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37369.2  9DFE C  246 G  252'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00              CGGCGAG (   1) MLPS  -3.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37369.2  7A0S C  223 G  229'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00              CGGCGAG (   1) MLPS  -3.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37369.2  8P9A C   90 G   96'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00              CGGCGAG (   1) MLPS  -3.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37369.2  8CRE C   89 G   95'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00              CGGCGAG (   1) MLPS  -3.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37369.2  5J7L C  246 G  252'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00              CGGCGAG (   1) MLPS  -3.35 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_37369.2  4WF9 C  249 G  255'

 matches the original group, cWW-tSH-F-F-F
Better:   0 Equal:   0 Score 1.00              CCGCGAG (   1) MLPS  -4.88 deficit   1.54 prct   0.00 CutScore  88.40;  Ed  0, 0
ans =

    ' HL_37369.2  4V9F C  217 G  223'

 matches the original group, cWW-tSH-F-F-F
Better:   1 Equal:   0 Score 0.00              UUUCAAG (   1) MLPS  -7.55 deficit   4.20 prct   0.00 CutScore  68.25;  Ed  0, 0
ans =

    ' HL_37369.2  8P9A U 1396 G 1402'

 scores better against   1 groups: HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -6.96, deficit  0.51, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              UUUCAAG (   1) MLPS  -7.55 deficit   4.20 prct   0.00 CutScore  68.25;  Ed  0, 0
ans =

    ' HL_37369.2  8CRE U 1382 G 1388'

 scores better against   1 groups: HL_31585.4,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 2, MLPS -6.96, deficit  0.51, prct   0.00; 
Group 173 is from HL_72628.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_72628.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-tSH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            CGACAUAAG (   1) MLPS  -5.62 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_72628.1  3PDR C   99 G  107'

 matches the original group, cWW-tSH-F-F-F-F
Group 202 is from HL_81538.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_81538.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-tSH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GGUAACAC (   1) MLPS  -5.79 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81538.2  5J7L G  712 C  719'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CGUAACAG (   1) MLPS  -5.83 deficit   0.04 prct   0.00 CutScore  99.62;  Ed  0, 0
ans =

    ' HL_81538.2  5D8H C 1202 G 1209'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CGUAACAG (   1) MLPS  -5.83 deficit   0.04 prct   0.00 CutScore  99.62;  Ed  0, 0
ans =

    ' HL_81538.2  1MMS C 1092 G 1099'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             UGUAACAA (   1) MLPS  -5.96 deficit   0.18 prct   0.00 CutScore  98.35;  Ed  0, 0
ans =

    ' HL_81538.2  8CRE U 1263 A 1270'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             UGUAACAA (   1) MLPS  -5.96 deficit   0.18 prct   0.00 CutScore  98.35;  Ed  0, 0
ans =

    ' HL_81538.2  8P9A U 1267 A 1274'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GUUAAAAC (   1) MLPS  -6.40 deficit   0.61 prct   0.00 CutScore  94.26;  Ed  0, 0
ans =

    ' HL_81538.2  3HHN G   92 C   99'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             CGUAAUAG (   1) MLPS  -6.93 deficit   1.14 prct   0.00 CutScore  89.37;  Ed  0, 0
ans =

    ' HL_81538.2  6PRV C 1092 G 1099'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGUGAGAC (   1) MLPS  -7.67 deficit   1.88 prct   0.00 CutScore  82.47;  Ed  0, 0
ans =

    ' HL_81538.2  9DFE G  712 C  719'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGUGGCUC (   1) MLPS  -7.92 deficit   2.13 prct   0.00 CutScore  80.11;  Ed  0, 0
ans =

    ' HL_81538.2  5AOX G   11 C   18'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00             GGUGGCGC (   1) MLPS  -8.17 deficit   2.39 prct   0.00 CutScore  77.72;  Ed  0, 0
ans =

    ' HL_81538.2  1E8O G  110 C  117'

 matches the original group, cWW-tSH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUAAUACC (   1) MLPS  -8.56 deficit   2.77 prct   0.00 CutScore  74.14;  Ed  0, 0
ans =

    ' HL_81538.2  5J7L G  462 C  470'

 matches the original group, cWW-tSH-F-F-F-F
Better:   1 Equal:   0 Score 0.00             AGUUAUGU (   1) MLPS  -9.52 deficit   3.73 prct   0.00 CutScore  65.16;  Ed  0, 0
ans =

    ' HL_81538.2  4WF9 A  136 U  143'

 scores better against   1 groups: HL_42046.2,  7 NTs, cWW-tSS-F-F-F                           , Ed  4, 2, MLPS -6.71, deficit  2.07, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           AUUGAGAGCU (   1) MLPS -10.84 deficit   5.05 prct   0.00 CutScore  52.83;  Ed  0, 0
ans =

    ' HL_81538.2  8CRE A 1223 U 1232'

 scores better against   1 groups: HL_55436.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  4, 3, MLPS -7.85, deficit -0.22, prct   0.00; 
Better:   1 Equal:   0 Score 0.00           AUUGAGAGCU (   1) MLPS -10.84 deficit   5.05 prct   0.00 CutScore  52.83;  Ed  0, 0
ans =

    ' HL_81538.2  8P9A A 1238 U 1247'

 scores better against   1 groups: HL_55436.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  4, 3, MLPS -7.85, deficit -0.22, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            CUCGAACAG (   1) MLPS -11.62 deficit   5.83 prct   0.00 CutScore  45.55;  Ed  0, 0
ans =

    ' HL_81538.2  4KQY C   94 G  102'

 scores better against   5 groups: HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  3, 3, MLPS -8.87, deficit  2.37, prct   0.00; HL_41464.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  5, 3, MLPS -9.80, deficit  1.77, prct   0.00; HL_64690.6,  8 NTs, cWW-cSW-F-F-F-F                         , Ed  5, 3, MLPS -9.80, deficit  3.38, prct   0.00; HL_18565.1,  8 NTs, cWW-cWW-F-F-F-F                         , Ed  4, 3, MLPS -10.21, deficit  5.04, prct   0.00; HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  2, 2, MLPS -11.17, deficit  6.41, prct   0.00; 
Better:   4 Equal:   0 Score 0.00            CGGCGAAAG (   1) MLPS -14.11 deficit   8.32 prct   0.00 CutScore  22.32;  Ed  0, 0
ans =

    ' HL_81538.2  4V9F C 1705 G 1713'

 scores better against   4 groups: HL_72628.1,  8 NTs, cWW-tSH-F-F-F-F                         , Ed  3, 3, MLPS -8.91, deficit  3.30, prct   0.00; HL_10540.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  3, 1, MLPS -9.41, deficit  2.20, prct   0.00; HL_07951.3,  4 NTs, cWW-F-F                                 , Ed  2, 2, MLPS -12.30, deficit  2.57, prct   0.00; HL_93438.2, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  2, 2, MLPS -12.88, deficit  5.59, prct   0.00; 
Group  84 is from HL_32735.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_32735.2
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-tSH-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            AGUUCAUAU (   1) MLPS  -3.63 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_32735.2  5J7L A 2471 U 2479'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CGUUCAUAG (   1) MLPS  -3.66 deficit   0.03 prct   0.00 CutScore  99.82;  Ed  0, 0
ans =

    ' HL_32735.2  8P9A C 2840 G 2848'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CGUUCAUAG (   1) MLPS  -3.66 deficit   0.03 prct   0.00 CutScore  99.82;  Ed  0, 0
ans =

    ' HL_32735.2  8CRE C 2812 G 2820'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AGUCCAUAU (   1) MLPS  -4.31 deficit   0.68 prct   0.00 CutScore  96.00;  Ed  0, 0
ans =

    ' HL_32735.2  7A0S A 2450 U 2458'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AGUUCACAU (   1) MLPS  -4.42 deficit   0.79 prct   0.00 CutScore  95.33;  Ed  0, 0
ans =

    ' HL_32735.2  4WF9 A 2498 U 2506'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            CGUCCACAG (   1) MLPS  -5.13 deficit   1.49 prct   0.00 CutScore  91.15;  Ed  0, 0
ans =

    ' HL_32735.2  9DFE C 2471 G 2479'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            AGCACAUAU (   1) MLPS  -6.43 deficit   2.80 prct   0.00 CutScore  83.41;  Ed  0, 0
ans =

    ' HL_32735.2  4V9F A 2506 U 2514'

 matches the original group, cWW-tSH-F-F-F-F-F
Group 130 is from HL_53454.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_53454.2
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-tSH-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CGUGUGGAAG (   1) MLPS  -8.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_53454.2  7A0S C 2383 G 2392'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           CGUGUGGAAG (   1) MLPS  -8.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_53454.2  9DFE C 2404 G 2413'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           CGCAUGGAAG (   1) MLPS  -8.98 deficit   0.84 prct   0.00 CutScore  94.43;  Ed  0, 0
ans =

    ' HL_53454.2  4WF9 C 2431 G 2440'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           UGAAUGGAAG (   1) MLPS  -9.54 deficit   1.39 prct   0.00 CutScore  90.75;  Ed  0, 0
ans =

    ' HL_53454.2  5J7L U 2404 G 2413'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         UAUCGGUUAGAG (   1) MLPS -14.86 deficit   6.71 prct   0.00 CutScore  55.41;  Ed  0, 0
ans =

    ' HL_53454.2  7KGA U   53 G   64'

 matches the original group, cWW-tSH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         UAUCGGUUAGAG (   1) MLPS -14.86 deficit   6.71 prct   0.00 CutScore  55.41;  Ed  0, 0
ans =

    ' HL_53454.2  7KGA U   53 G   64'

 matches the original group, cWW-tSH-F-F-F-F-F
Group  32 is from HL_11542.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_11542.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tSH-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        CGAGCGGCCAAAG (   1) MLPS  -9.53 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_11542.1  4WZD C   12 G   24'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Group  99 is from HL_38649.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_38649.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tSH-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         GGAACACUAUAC (   1) MLPS -10.11 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38649.1  3HHN G    1 C   12'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         GGAACACUAUAC (   1) MLPS -10.11 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_38649.1  3IVK G    1 C   12'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CUGACCGAUAUG (   1) MLPS -13.97 deficit   3.86 prct   0.00 CutScore  76.90;  Ed  0, 0
ans =

    ' HL_38649.1  4RMO C   11 G   22'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CGGCGCAUGCAG (   1) MLPS -14.12 deficit   4.00 prct   0.00 CutScore  76.03;  Ed  0, 0
ans =

    ' HL_38649.1  2A64 C  313 G  324'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00         GUGCAGCCCGUC (   1) MLPS -15.22 deficit   5.11 prct   0.00 CutScore  69.41;  Ed  0, 0
ans =

    ' HL_38649.1  7MLX G   11 C   22'

 scores better against   1 groups: HL_41543.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  0, 0, MLPS -9.02, deficit  0.14, prct   0.00; 
Group 131 is from HL_53504.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_53504.3
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tSH-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GGAAAUGAAC (   1) MLPS  -9.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_53504.3  2A64 G  288 C  297'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00         CGAAGUCAUAAG (   1) MLPS  -9.99 deficit   0.65 prct   0.00 CutScore  95.13;  Ed  0, 0
ans =

    ' HL_53504.3  1NBS C   96 G  107'

 matches the original group, cWW-tSH-F-F-F-F-F-F
Group 223 is from HL_88558.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_88558.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-tSH-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         CGAAUCCAUAAG (   1) MLPS  -8.66 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_88558.1  2A64 C   97 G  108'

 matches the original group, cWW-tSH-F-F-F-F-F-F-F
Group  33 is from HL_12758.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_12758.3
This group is considered to be structured ***************************
Number of NTs: 19  Signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CGAAGGGACGGUGCGGAGAGGAGAG (   1) MLPS -10.68 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_12758.3  5V3F C    4 G   28'

 matches the original group, cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH
Better:   0 Equal:   0 Score 1.00 CGAAGGUGAGGAGAGGCGAGGAAGAG (   1) MLPS -13.92 deficit   3.24 prct   0.00 CutScore  87.04;  Ed  0, 0
ans =

    ' HL_12758.3  8U5Z C    6 G   31'

 matches the original group, cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH
Group 103 is from HL_40252.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_40252.4
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tSH-cWS-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   4 Equal:   0 Score 0.00          CAAGCGGUAAG (   1) MLPS -10.25 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_40252.4  4JYZ C  912 G  923'

 scores better against   4 groups: HL_23010.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -7.81, deficit  0.00, prct   0.00; HL_50418.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  5, 3, MLPS -9.51, deficit  0.56, prct   0.00; HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.94, deficit  3.22, prct   0.00; HL_07480.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  3, 1, MLPS -9.99, deficit  2.75, prct   0.00; 
Better:   4 Equal:   0 Score 0.00          CAAGCGGUAAG (   1) MLPS -10.25 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_40252.4  1QTQ C  912 G  923'

 scores better against   4 groups: HL_23010.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  0, 0, MLPS -7.81, deficit  0.00, prct   0.00; HL_50418.1, 11 NTs, cWW-F-F-F-F-F-F-F-F-F                   , Ed  5, 3, MLPS -9.51, deficit  0.56, prct   0.00; HL_23115.1,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 2, MLPS -9.94, deficit  3.22, prct   0.00; HL_07480.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  3, 1, MLPS -9.99, deficit  2.75, prct   0.00; 
Better:   0 Equal:   0 Score 1.00        CGAGCGGUUGAAG (   1) MLPS -12.20 deficit   1.95 prct   0.00 CutScore  88.11;  Ed  0, 0
ans =

    ' HL_40252.4  8JOZ C   12 G   23'

 matches the original group, cWW-tSH-cWS-F
Better:   0 Equal:   0 Score 1.00        CGAGUGGCUGAAG (   1) MLPS -12.20 deficit   1.95 prct   0.00 CutScore  88.11;  Ed  0, 0
ans =

    ' HL_40252.4  9QRP C   12 G   24'

 matches the original group, cWW-tSH-cWS-F
Better:   2 Equal:   0 Score 0.00         CCAAUGGUCACG (   1) MLPS -13.41 deficit   3.16 prct   0.00 CutScore  80.71;  Ed  0, 0
ans =

    ' HL_40252.4  1F7U C  912 G  923'

 scores better against   2 groups: HL_74379.3,  9 NTs, cWW-F-F-cSS-cSS-F-F-F                   , Ed  5, 3, MLPS -12.07, deficit  2.63, prct   0.00; HL_91939.2, 11 NTs, cWW-tSH-tHH-tWW-F-F-F                   , Ed  4, 4, MLPS -12.87, deficit  4.80, prct   0.00; 
Group   7 is from HL_02581.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_02581.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-tSH-cWS-tSW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      CAAGCCUGGCCAAAG (   1) MLPS  -9.53 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_02581.1  2ZZM C   12 G   23'

 matches the original group, cWW-tSH-cWS-tSW-F-F-F
Better:   0 Equal:   0 Score 1.00      CGAGCCUGGUCAAAG (   1) MLPS  -9.55 deficit   0.02 prct   0.00 CutScore  99.89;  Ed  0, 0
ans =

    ' HL_02581.1  1WZ2 C  912 G  926'

 matches the original group, cWW-tSH-cWS-tSW-F-F-F
Group 232 is from HL_91939.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_91939.2
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-tSH-tHH-tWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        CUAAAAGGUAACG (   1) MLPS  -8.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_91939.2  4WF9 C 2291 G 2303'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00        CUAAAAGGUAACG (   1) MLPS  -8.07 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_91939.2  9DFE C 2264 G 2276'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00        UUAAACGAUAACG (   1) MLPS  -8.46 deficit   0.39 prct   0.00 CutScore  97.99;  Ed  0, 0
ans =

    ' HL_91939.2  8P9A U 2633 G 2645'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00        UUAAACGAUAACG (   1) MLPS  -8.46 deficit   0.39 prct   0.00 CutScore  97.99;  Ed  0, 0
ans =

    ' HL_91939.2  8CRE U 2605 G 2617'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00        CGAAAAGAUAUCG (   1) MLPS  -8.55 deficit   0.48 prct   0.00 CutScore  97.53;  Ed  0, 0
ans =

    ' HL_91939.2  4V9F C 2298 G 2310'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00        CCAAAAUGUAACG (   1) MLPS  -9.85 deficit   1.78 prct   0.00 CutScore  90.81;  Ed  0, 0
ans =

    ' HL_91939.2  7A0S C 2243 G 2255'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00        CUAAAGAGUAACG (   1) MLPS  -9.96 deficit   1.89 prct   0.00 CutScore  90.27;  Ed  0, 0
ans =

    ' HL_91939.2  5J7L C 2264 G 2276'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00          UUCCCAACGAG (   1) MLPS -15.84 deficit   7.77 prct   0.00 CutScore  59.93;  Ed  0, 0
ans =

    ' HL_91939.2  4V9F U 2389 G 2399'

 matches the original group, cWW-tSH-tHH-tWW-F-F-F
Group  45 is from HL_18423.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_18423.1
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tSH-tHS-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          UGAUCAAUGAG (   1) MLPS  -9.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_18423.1  3HJW U   23 G   33'

 matches the original group, cWW-tSH-tHS-F
Group 174 is from HL_73183.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_73183.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      UGAAGGCAGAAGUAA (   1) MLPS -10.22 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_73183.1  3IGI U   47 A   61'

 matches the original group, cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00   CGAAAAAAUUGGAAGUAG (   1) MLPS -11.49 deficit   1.27 prct   0.00 CutScore  93.49;  Ed  0, 0
ans =

    ' HL_73183.1  6ZDU C 1297 G 1314'

 matches the original group, cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
Group 128 is from HL_51921.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_51921.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UGAAUUGCAGAUAUUCGUGAA (   1) MLPS -12.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_51921.1  8CRE U   69 A   89'

 matches the original group, cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00 UGAAUUGCAGAAUUCCGUGAA (   1) MLPS -12.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_51921.1  8P9A U   69 A   89'

 matches the original group, cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
Group 248 is from HL_98870.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_98870.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-tSH-tWW-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      UGUGGUACAGAGAAG (   1) MLPS  -9.30 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_98870.1  6DU5 U    7 G   21'

 matches the original group, cWW-tSH-tWW-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00    CGUAGGCUACAGAGAAG (   1) MLPS -13.42 deficit   4.12 prct   0.00 CutScore  79.55;  Ed  0, 0
ans =

    ' HL_98870.1  6DU4 C    7 G   23'

 matches the original group, cWW-tSH-tWW-F-F-F-F-F
Group 107 is from HL_42046.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_42046.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tSS-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             CGUUCUAG (   1) MLPS  -4.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_42046.2  5F5H C    8 G   15'

 matches the original group, cWW-tSS-F-F-F
Better:   0 Equal:   0 Score 1.00             CGUUCUAG (   1) MLPS  -4.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_42046.2  5F5H C    8 G   15'

 matches the original group, cWW-tSS-F-F-F
Better:   0 Equal:   0 Score 1.00             CGUUUUAG (   1) MLPS  -4.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_42046.2  5F5F C    7 G   14'

 matches the original group, cWW-tSS-F-F-F
Better:   0 Equal:   0 Score 1.00             CGUUUUAG (   1) MLPS  -4.64 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_42046.2  5F5F C    7 G   14'

 matches the original group, cWW-tSS-F-F-F
Better:   0 Equal:   0 Score 1.00              CGUUGAG (   1) MLPS  -6.21 deficit   1.57 prct   0.00 CutScore  87.02;  Ed  0, 0
ans =

    ' HL_42046.2  9DFE C  612 G  615'

 matches the original group, cWW-tSS-F-F-F
Group  58 is from HL_22584.6 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_22584.6
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-tSW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8VM9 G   57 C   63'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8D29 G   13 C   19'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8D29 G   13 C   19'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  6DB9 G   23 C   29'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8VM8 G   63 C   69'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8DK7 G   13 C   19'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  4KZD G   37 C   43'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  9C2K G   49 C   55'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  9AUS G    5 C   11'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  9E7E G   49 C   55'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  9DN4 G    8 C   14'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  9C2K G   49 C   55'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8D29 G   13 C   19'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  3IVK G   59 C   65'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  9C75 G   49 C   55'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8T29 G   35 C   41'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8DP3 G   20 C   26'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8VMB G   18 C   24'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8UIW G   29 C   35'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  6X5M G   14 C   20'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  7MLX G   40 C   46'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  7SZU G   35 C   41'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00              GAAACAC (   1) MLPS  -2.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_22584.6  8VMA G   60 C   66'

 matches the original group, cWW-tSW-F
Better:   1 Equal:   0 Score 0.00              GAACCCC (   1) MLPS  -7.40 deficit   5.00 prct   0.00 CutScore  55.71;  Ed  0, 0
ans =

    ' HL_22584.6  6OL3 G   64 C   70'

 scores better against   1 groups: HL_47787.2,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -7.34, deficit  3.62, prct   0.00; 
Better:   9 Equal:   0 Score 0.00               CUCCAG (   1) MLPS  -8.50 deficit   6.11 prct   0.00 CutScore  45.89;  Ed  0, 0
ans =

    ' HL_22584.6  9DFE C 2701 G 2706'

 scores better against   9 groups: HL_46501.1,  5 NTs, cWW-cWS                                 , Ed  2, 2, MLPS -7.21, deficit  2.89, prct   0.00; HL_70782.2,  3 NTs, cWW-F                                   , Ed  2, 2, MLPS -7.23, deficit  0.55, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  4, 2, MLPS -7.33, deficit  0.96, prct   0.00; HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  3, 2, MLPS -7.49, deficit  4.27, prct   0.00; HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -7.66, deficit  3.18, prct   0.00; 
Better:  14 Equal:   0 Score 0.00               CGAACG (   1) MLPS -10.69 deficit   8.29 prct   0.00 CutScore  26.52;  Ed  0, 0
ans =

    ' HL_22584.6  3IGI C  368 G  373'

 scores better against  14 groups: HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  1, 1, MLPS -5.59, deficit -0.51, prct   0.00; HL_82710.2,  5 NTs, cWW-F-F-F                               , Ed  3, 1, MLPS -6.48, deficit  2.15, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.59, deficit  3.41, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -6.72, deficit  2.52, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -6.78, deficit  0.65, prct   0.00; 
Group  87 is from HL_34617.5 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_34617.5
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-tSW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5Y85 C   28 G   33'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5D5L C   60 G   65'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5LYS C   48 G   60'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  6SY6 C   19 G   24'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  8F5G C   12 G   17'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  9DFE C 1691 G 1696'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4JF2 C   60 G   65'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4V9F C 1769 G 1774'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4PDB C   17 G   22'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  6QN3 C    9 G   14'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5J7L C  419 G  424'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4LFB C  419 G  424'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  2HW8 C   15 G   20'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4PMI C   53 G   58'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  6QN3 C    9 G   14'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5J7L C 1691 G 1696'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5J7L C 1449 G 1454'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  8CRE C 1919 G 1924'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  7KKV C  517 G  522'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4AY2 C    8 G   13'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  8P9A C 1923 G 1928'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  1YLS C  220 G  225'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  1KUQ C    8 G   13'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  8T29 C   58 G   63'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  1I6U C   16 G   21'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  4WF9 C 1735 G 1740'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  6KYV C    9 G   14'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  7A0S C 1708 G 1713'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  7RGU C   10 G   15'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  1NBS C  152 G  157'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  6DME C   57 G   62'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  6JQ6 C   45 G   50'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  5J7L C  207 G  212'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUUCGG (   1) MLPS  -1.94 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_34617.5  3V7E C   65 G   70'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               GUUCGC (   1) MLPS  -2.87 deficit   0.93 prct   0.00 CutScore  90.70;  Ed  0, 0
ans =

    ' HL_34617.5  9FN3 G   20 C   25'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               GUUCGC (   1) MLPS  -2.87 deficit   0.93 prct   0.00 CutScore  90.70;  Ed  0, 0
ans =

    ' HL_34617.5  8ID2 G   10 C   15'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               GUUCGC (   1) MLPS  -2.87 deficit   0.93 prct   0.00 CutScore  90.70;  Ed  0, 0
ans =

    ' HL_34617.5  7OAX G   21 C   26'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               GUUCGC (   1) MLPS  -2.87 deficit   0.93 prct   0.00 CutScore  90.70;  Ed  0, 0
ans =

    ' HL_34617.5  3IGI G  338 C  343'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               GUUCGC (   1) MLPS  -2.87 deficit   0.93 prct   0.00 CutScore  90.70;  Ed  0, 0
ans =

    ' HL_34617.5  7MLW G   80 C   85'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               AUUCGU (   1) MLPS  -2.96 deficit   1.02 prct   0.00 CutScore  89.76;  Ed  0, 0
ans =

    ' HL_34617.5  8K7W A   20 U   25'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               AUUCGU (   1) MLPS  -2.96 deficit   1.02 prct   0.00 CutScore  89.76;  Ed  0, 0
ans =

    ' HL_34617.5  6DLR A   61 U   66'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUACGG (   1) MLPS  -3.39 deficit   1.44 prct   0.00 CutScore  85.53;  Ed  0, 0
ans =

    ' HL_34617.5  1UN6 C   15 G   64'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUACGG (   1) MLPS  -3.39 deficit   1.44 prct   0.00 CutScore  85.53;  Ed  0, 0
ans =

    ' HL_34617.5  4LFB C 1449 G 1454'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUACGG (   1) MLPS  -3.39 deficit   1.44 prct   0.00 CutScore  85.53;  Ed  0, 0
ans =

    ' HL_34617.5  4LFB C  342 G  347'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUACGG (   1) MLPS  -3.39 deficit   1.44 prct   0.00 CutScore  85.53;  Ed  0, 0
ans =

    ' HL_34617.5  5J7L C  342 G  347'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUACGG (   1) MLPS  -3.39 deficit   1.44 prct   0.00 CutScore  85.53;  Ed  0, 0
ans =

    ' HL_34617.5  5J7L C 1533 G 1538'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               GUACGC (   1) MLPS  -4.31 deficit   2.37 prct   0.00 CutScore  76.23;  Ed  0, 0
ans =

    ' HL_34617.5  7L0Z G   30 C   35'

 matches the original group, cWW-tSW-F
Better:   0 Equal:   0 Score 1.00               CUCCGG (   1) MLPS  -4.48 deficit   2.54 prct   0.00 CutScore  74.52;  Ed  0, 0
ans =

    ' HL_34617.5  3U4M C 2143 G 2148'

 matches the original group, cWW-tSW-F
Better:   2 Equal:   0 Score 0.00               AUUUGU (   1) MLPS  -5.97 deficit   4.03 prct   0.00 CutScore  59.63;  Ed  0, 0
ans =

    ' HL_34617.5  6CK5 A   27 U   32'

 scores better against   2 groups: HL_32392.1,  4 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -5.59, deficit  1.92, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -5.71, deficit  1.24, prct   0.00; 
Better:   2 Equal:   0 Score 0.00               CGCCAG (   1) MLPS  -6.76 deficit   4.82 prct   0.00 CutScore  51.74;  Ed  0, 0
ans =

    ' HL_34617.5  4U7U C   51 G   56'

 scores better against   2 groups: HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  1, 0, MLPS -4.61, deficit  0.14, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               CGUGAG (   1) MLPS  -6.88 deficit   4.94 prct   0.00 CutScore  50.47;  Ed  0, 0
ans =

    ' HL_34617.5  4LGT C 2594 G 2599'

 scores better against   5 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.86, deficit  3.10, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -5.11, deficit  0.91, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.57, deficit  0.20, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -6.64, deficit  2.17, prct   0.00; 
Better:   5 Equal:   0 Score 0.00               CGUGAG (   1) MLPS  -6.88 deficit   4.94 prct   0.00 CutScore  50.47;  Ed  0, 0
ans =

    ' HL_34617.5  3DH3 C 2594 G 2599'

 scores better against   5 groups: HL_37824.7,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -4.86, deficit  3.10, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -5.11, deficit  0.91, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.57, deficit  0.20, prct   0.00; HL_56676.1,  6 NTs, cWW-F-F                                 , Ed  2, 1, MLPS -6.64, deficit  2.17, prct   0.00; 
Better:   1 Equal:   0 Score 0.00               UCACGG (   1) MLPS  -8.55 deficit   6.61 prct   0.00 CutScore  33.75;  Ed  0, 0
ans =

    ' HL_34617.5  8SP9 U   90 G   95'

 scores better against   1 groups: HL_99040.1,  6 NTs, F-F-F-F-F-F                             , Ed  2, 2, MLPS -5.42, deficit  2.20, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               CCAAGG (   1) MLPS  -8.79 deficit   6.85 prct   0.00 CutScore  31.33;  Ed  0, 0
ans =

    ' HL_34617.5  8CRE C  412 G  417'

 scores better against   7 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.03, deficit  0.28, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.68, deficit  3.48, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -8.05, deficit  1.95, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -8.21, deficit  2.69, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.48, deficit  2.35, prct   0.00; 
Better:   7 Equal:   0 Score 0.00               CCAAGG (   1) MLPS  -8.79 deficit   6.85 prct   0.00 CutScore  31.33;  Ed  0, 0
ans =

    ' HL_34617.5  8P9A C  414 G  419'

 scores better against   7 groups: HL_59843.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 1, MLPS -6.03, deficit  0.28, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -7.68, deficit  3.48, prct   0.00; HL_93535.1,  6 NTs, cWW-F-F-F-F                             , Ed  3, 2, MLPS -8.05, deficit  1.95, prct   0.00; HL_57875.1,  4 NTs, cWW-F-F                                 , Ed  3, 2, MLPS -8.21, deficit  2.69, prct   0.00; HL_53890.2,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -8.48, deficit  2.35, prct   0.00; 
Better:  20 Equal:   0 Score 0.00               CGCUAG (   1) MLPS  -9.76 deficit   7.82 prct   0.00 CutScore  21.61;  Ed  0, 0
ans =

    ' HL_34617.5  5ML7 C 2187 G 2192'

 scores better against  20 groups: HL_65794.5,  6 NTs, cWW-F-F-F-F                             , Ed  2, 1, MLPS -5.12, deficit  0.65, prct   0.00; HL_28791.1,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -5.99, deficit  2.20, prct   0.00; HL_80709.3,  5 NTs, cWW-F-F-F                               , Ed  1, 1, MLPS -6.01, deficit  2.83, prct   0.00; HL_52953.3,  6 NTs, cWW-F-F-F-F                             , Ed  2, 2, MLPS -6.72, deficit  2.52, prct   0.00; HL_13963.3,  4 NTs, cWW-F-F                                 , Ed  3, 1, MLPS -6.82, deficit  0.45, prct   0.00; 
Better:   6 Equal:   0 Score 0.00              ACAGAUU (   1) MLPS -14.53 deficit  12.59 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_34617.5  7LYF A   59 U   65'

 scores better against   6 groups: HL_10453.3,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 3, MLPS -7.65, deficit  2.05, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -7.78, deficit  2.18, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  4, 2, MLPS -8.23, deficit  1.23, prct   0.00; HL_99748.1,  6 NTs, cWW-F-F-cSH                             , Ed  4, 2, MLPS -9.55, deficit  2.84, prct   0.00; HL_50537.6,  5 NTs, cWW-F-F-F                               , Ed  4, 2, MLPS -10.42, deficit  2.34, prct   0.00; 
Group 220 is from HL_87954.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_87954.2
This group is considered to be structured ***************************
Number of NTs:  5  Signature: cWW-tSW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00              UGAAAGG (   1) MLPS  -5.67 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_87954.2  5J7L U  779 G  785'

 scores better against   1 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -5.34, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              UGAAAGG (   1) MLPS  -5.67 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_87954.2  4V9F U  872 G  878'

 scores better against   1 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -5.34, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              GUUCGGC (   1) MLPS  -6.50 deficit   0.83 prct   0.00 CutScore  91.29;  Ed  0, 0
ans =

    ' HL_87954.2  4LFB G 1134 C 1140'

 matches the original group, cWW-tSW-F
Better:   1 Equal:   0 Score 0.00              UGAAAAG (   1) MLPS  -6.77 deficit   1.10 prct   0.00 CutScore  88.44;  Ed  0, 0
ans =

    ' HL_87954.2  9DFE U  779 G  785'

 scores better against   1 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  1, 1, MLPS -6.44, deficit  1.10, prct   0.00; 
Better:   0 Equal:   0 Score 1.00              GUCCGGC (   1) MLPS  -7.01 deficit   1.34 prct   0.00 CutScore  85.92;  Ed  0, 0
ans =

    ' HL_87954.2  5J7L G 1134 C 1140'

 matches the original group, cWW-tSW-F
Better:   2 Equal:   0 Score 0.00              AGAAAUU (   1) MLPS  -7.04 deficit   1.37 prct   0.00 CutScore  85.57;  Ed  0, 0
ans =

    ' HL_87954.2  4WF9 A  824 U  830'

 scores better against   2 groups: HL_59735.5,  7 NTs, cWW-F-F-F-F-F                           , Ed  2, 0, MLPS -5.81, deficit  0.47, prct   0.00; HL_57176.2,  5 NTs, cWW-F-F-F                               , Ed  2, 1, MLPS -6.17, deficit  0.57, prct   0.00; 
Better:   1 Equal:   0 Score 0.00              CUUCGCG (   1) MLPS  -7.65 deficit   1.99 prct   0.00 CutScore  79.10;  Ed  0, 0
ans =

    ' HL_87954.2  4V9F C  136 G  142'

 scores better against   1 groups: HL_37369.2,  7 NTs, cWW-tSH-F-F-F                           , Ed  3, 2, MLPS -6.12, deficit  2.77, prct   0.00; 
Group  70 is from HL_27670.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_27670.2
This group is considered to be structured ***************************
Number of NTs:  6  Signature: cWW-tWH-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             GUAGAGUC (   1) MLPS  -5.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_27670.2  6DN2 G   88 C   95'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00             GUAGAGUC (   1) MLPS  -5.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_27670.2  3F2X G   88 C   95'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUGAGAGUC (   1) MLPS  -5.80 deficit   0.36 prct   0.00 CutScore  97.21;  Ed  0, 0
ans =

    ' HL_27670.2  7A0S G  338 C  346'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00             GUAUAGUC (   1) MLPS  -5.86 deficit   0.43 prct   0.00 CutScore  96.73;  Ed  0, 0
ans =

    ' HL_27670.2  6DN2 G   36 C   43'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00             GUAUAGUC (   1) MLPS  -5.86 deficit   0.43 prct   0.00 CutScore  96.73;  Ed  0, 0
ans =

    ' HL_27670.2  3F2X G   36 C   43'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUGAGAAUC (   1) MLPS  -6.31 deficit   0.88 prct   0.00 CutScore  93.29;  Ed  0, 0
ans =

    ' HL_27670.2  8P9A G  216 C  224'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUGAGAAUC (   1) MLPS  -6.31 deficit   0.88 prct   0.00 CutScore  93.29;  Ed  0, 0
ans =

    ' HL_27670.2  8CRE G  215 C  223'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUAAUAAUC (   1) MLPS  -6.44 deficit   1.00 prct   0.00 CutScore  92.31;  Ed  0, 0
ans =

    ' HL_27670.2  4WF9 G  370 C  378'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUGAAAGCC (   1) MLPS  -6.60 deficit   1.16 prct   0.00 CutScore  91.08;  Ed  0, 0
ans =

    ' HL_27670.2  9DFE G  327 C  335'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUUAUACUC (   1) MLPS  -7.75 deficit   2.32 prct   0.00 CutScore  82.24;  Ed  0, 0
ans =

    ' HL_27670.2  4FRN G   56 C   64'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUUAUACUC (   1) MLPS  -7.75 deficit   2.32 prct   0.00 CutScore  82.24;  Ed  0, 0
ans =

    ' HL_27670.2  4FRG G   58 C   66'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUGACAGCC (   1) MLPS  -8.42 deficit   2.99 prct   0.00 CutScore  77.10;  Ed  0, 0
ans =

    ' HL_27670.2  5J7L G  327 C  335'

 matches the original group, cWW-tWH-F-F
Better:   0 Equal:   0 Score 1.00            GUGACAACC (   1) MLPS  -8.93 deficit   3.50 prct   0.00 CutScore  73.19;  Ed  0, 0
ans =

    ' HL_27670.2  4V9F G  334 C  342'

 matches the original group, cWW-tWH-F-F
Group   4 is from HL_01609.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_01609.3
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tWH-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00             UUGGAAUA (   1) MLPS  -4.76 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_01609.3  4V9F U  312 A  319'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGAAAUUC (   1) MLPS  -5.67 deficit   0.91 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_01609.3  3F2X G   17 C   25'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGAAAUUC (   1) MLPS  -5.67 deficit   0.91 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_01609.3  6DN2 G   17 C   25'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGAAAUUC (   1) MLPS  -5.67 deficit   0.91 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_01609.3  6DN2 G   68 C   76'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGAAAUUC (   1) MLPS  -5.67 deficit   0.91 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_01609.3  3F2X G   68 C   76'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGAAAUUC (   1) MLPS  -5.67 deficit   0.91 prct   0.00 CutScore  92.70;  Ed  0, 0
ans =

    ' HL_01609.3  4FRG G   28 C   36'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             CUGGGAUG (   1) MLPS  -5.83 deficit   1.08 prct   0.00 CutScore  91.41;  Ed  0, 0
ans =

    ' HL_01609.3  5DH6 C   27 G   34'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             CUGGAAAG (   1) MLPS  -6.03 deficit   1.27 prct   0.00 CutScore  89.84;  Ed  0, 0
ans =

    ' HL_01609.3  5J7L C  305 G  312'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             CUGGAAAG (   1) MLPS  -6.03 deficit   1.27 prct   0.00 CutScore  89.84;  Ed  0, 0
ans =

    ' HL_01609.3  7A0S C  316 G  323'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             CUGGAAAG (   1) MLPS  -6.03 deficit   1.27 prct   0.00 CutScore  89.84;  Ed  0, 0
ans =

    ' HL_01609.3  4WF9 C  348 G  355'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             CUGAGAUG (   1) MLPS  -6.10 deficit   1.34 prct   0.00 CutScore  89.26;  Ed  0, 0
ans =

    ' HL_01609.3  2A64 C   69 G   76'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             UUGGAACA (   1) MLPS  -6.37 deficit   1.61 prct   0.00 CutScore  87.14;  Ed  0, 0
ans =

    ' HL_01609.3  8P9A U  194 A  201'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00             UUGGAACA (   1) MLPS  -6.37 deficit   1.61 prct   0.00 CutScore  87.14;  Ed  0, 0
ans =

    ' HL_01609.3  8CRE U  193 A  200'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGUAAUUC (   1) MLPS  -6.63 deficit   1.87 prct   0.00 CutScore  85.06;  Ed  0, 0
ans =

    ' HL_01609.3  4FRN G   28 C   36'

 matches the original group, cWW-tWH-F-F-F
Better:   1 Equal:   0 Score 0.00             UUGGGAAG (   1) MLPS  -8.66 deficit   3.90 prct   0.00 CutScore  68.83;  Ed  0, 0
ans =

    ' HL_01609.3  9DFE U  305 G  312'

 scores better against   1 groups: HL_85367.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -7.31, deficit  2.56, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            GUUACAAUC (   1) MLPS -10.26 deficit   5.50 prct   0.00 CutScore  56.06;  Ed  0, 0
ans =

    ' HL_01609.3  5X2G G   73 C   81'

 scores better against   5 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -8.26, deficit  2.83, prct   0.00; HL_20167.2,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  2, 2, MLPS -9.20, deficit  3.63, prct   0.00; HL_38808.1,  4 NTs, cWW-cWW                                 , Ed  4, 2, MLPS -9.36, deficit  0.44, prct   0.00; HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  2, 2, MLPS -9.69, deficit  7.33, prct   0.00; HL_87463.1,  9 NTs, cWW-cWW-F-F-F-F-F                       , Ed  3, 3, MLPS -10.11, deficit  4.50, prct   0.00; 
Better:   4 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS -11.38 deficit   6.62 prct   0.00 CutScore  47.06;  Ed  0, 0
ans =

    ' HL_01609.3  3VJR G   13 C   21'

 scores better against   4 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  0, 0, MLPS -5.60, deficit  3.24, prct   0.00; HL_39243.1,  6 NTs, cWW-F-F-F-F                             , Ed  0, 0, MLPS -8.90, deficit  1.90, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  5, 3, MLPS -11.02, deficit  2.76, prct   0.00; 
Better:   7 Equal:   0 Score 0.00            GUCAUCAGC (   1) MLPS -15.85 deficit  11.09 prct   0.00 CutScore  11.37;  Ed  0, 0
ans =

    ' HL_01609.3  8CRE G 1581 C 1589'

 scores better against   7 groups: HL_93383.1,  9 NTs, cWW-cSH-F-F-F-F-F-F                     , Ed  3, 3, MLPS -8.30, deficit  4.83, prct   0.00; HL_38046.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  5, 3, MLPS -9.88, deficit  3.38, prct   0.00; HL_83808.4,  7 NTs, cWW-tWW-F-F-F                           , Ed  4, 3, MLPS -9.94, deficit  4.37, prct   0.00; HL_38808.1,  4 NTs, cWW-cWW                                 , Ed  5, 3, MLPS -10.53, deficit  1.61, prct   0.00; HL_80362.1,  5 NTs, cWW-F-F-F                               , Ed  5, 3, MLPS -10.95, deficit  3.88, prct   0.00; 
Group 151 is from HL_61996.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_61996.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tWH-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GUGAAGAUGC (   1) MLPS  -5.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_61996.2  5J7L G 2027 C 2036'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00           GUGAAGAUGC (   1) MLPS  -5.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_61996.2  4WF9 G 2054 C 2063'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00           GUGAAGAUGC (   1) MLPS  -5.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_61996.2  9DFE G 2027 C 2036'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00           GGGAACGGGC (   1) MLPS  -7.35 deficit   1.54 prct   0.00 CutScore  90.29;  Ed  0, 0
ans =

    ' HL_61996.2  8P9A G 2369 C 2378'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00           GGGAACGGGC (   1) MLPS  -7.35 deficit   1.54 prct   0.00 CutScore  90.29;  Ed  0, 0
ans =

    ' HL_61996.2  8CRE G 2347 C 2356'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00           GUAAAGAUGC (   1) MLPS  -7.55 deficit   1.73 prct   0.00 CutScore  89.03;  Ed  0, 0
ans =

    ' HL_61996.2  7A0S G 2010 C 2019'

 matches the original group, cWW-tWH-F-F-F
Better:   0 Equal:   0 Score 1.00           GUGCGGAGUC (   1) MLPS  -8.56 deficit   2.74 prct   0.00 CutScore  82.68;  Ed  0, 0
ans =

    ' HL_61996.2  4V9F G 2068 C 2077'

 matches the original group, cWW-tWH-F-F-F
Better:  12 Equal:   0 Score 0.00            GUUCGAAUC (   1) MLPS -11.84 deficit   6.02 prct   0.00 CutScore  61.93;  Ed  0, 0
ans =

    ' HL_61996.2  5E7K G   53 C   61'

 scores better against  12 groups: HL_28252.8,  9 NTs, cWW-tWH-F-F-F-F-F                       , Ed  0, 0, MLPS -2.36, deficit  0.00, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  2, 2, MLPS -8.07, deficit  4.98, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -8.56, deficit  3.13, prct   0.00; HL_06059.6,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  3, 2, MLPS -8.82, deficit  4.07, prct   0.00; HL_87463.1,  9 NTs, cWW-cWW-F-F-F-F-F                       , Ed  2, 2, MLPS -9.01, deficit  3.40, prct   0.00; 
Group  74 is from HL_29129.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_29129.3
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-tWH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          UUUGGGGAAAG (   1) MLPS  -6.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_29129.3  5TPY U   28 G   38'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00          UUUGGGGAAAG (   1) MLPS  -6.88 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_29129.3  7U4A U   28 G   38'

 matches the original group, cWW-tWH-F-F-F-F
Better:   2 Equal:   0 Score 0.00           GUUGGGGAUC (   1) MLPS  -8.41 deficit   1.53 prct   0.00 CutScore  91.02;  Ed  0, 0
ans =

    ' HL_29129.3  8X5V G   71 C   80'

 scores better against   2 groups: HL_87463.1,  9 NTs, cWW-cWW-F-F-F-F-F                       , Ed  2, 2, MLPS -7.81, deficit  2.20, prct   0.00; HL_99867.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  2, 2, MLPS -8.08, deficit -0.51, prct   0.00; 
Group 203 is from HL_81545.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_81545.2
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-tWH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GUUAAUAUUC (   1) MLPS  -4.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81545.2  4V9F G 1498 C 1507'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUUAAUAUUC (   1) MLPS  -4.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81545.2  5J7L G 1389 C 1398'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUUAAUAUUC (   1) MLPS  -4.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_81545.2  9DFE G 1389 C 1398'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUUAAGAUUC (   1) MLPS  -4.87 deficit   0.59 prct   0.00 CutScore  96.72;  Ed  0, 0
ans =

    ' HL_81545.2  8P9A G 1599 C 1608'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUUAAAAUUC (   1) MLPS  -5.38 deficit   1.10 prct   0.00 CutScore  93.87;  Ed  0, 0
ans =

    ' HL_81545.2  8CRE G 1595 C 1604'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUUGAUAUUC (   1) MLPS  -5.75 deficit   1.47 prct   0.00 CutScore  91.82;  Ed  0, 0
ans =

    ' HL_81545.2  4WF9 G 1426 C 1435'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUCAAGAUUC (   1) MLPS  -6.62 deficit   2.34 prct   0.00 CutScore  86.95;  Ed  0, 0
ans =

    ' HL_81545.2  7A0S G 1402 C 1411'

 matches the original group, cWW-tWH-F-F-F-F
Group 213 is from HL_86012.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_86012.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-tWH-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GUUCGAUCC (   1) MLPS  -3.10 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86012.1  1ZL3 G  408 C  416'

 matches the original group, cWW-tWH-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUCC (   1) MLPS  -3.10 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_86012.1  1R3E G  408 C  416'

 matches the original group, cWW-tWH-F-F-F-F
Group  72 is from HL_28252.8 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_28252.8
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-tWH-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  5HR7 G   52 C   60'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  7E8O G   52 C   60'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  1QTQ G  953 C  961'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  5HR6 G   52 C   60'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  4LCK G   52 C   60'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  2DU3 G  952 C  960'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  1WZ2 G  965 C  973'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  2AZX G  553 C  561'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  5B63 G  954 C  962'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  3AMU G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  2DER G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  1H3E G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  6GSL G   54 C   62'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  4JYZ G  953 C  961'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  4V8N G   55 C   63'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  8JOZ G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  5E81 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  5IB8 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  4WZD G   62 C   70'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  6NWY G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  4V9K G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAAUC (   1) MLPS  -2.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_28252.8  6GSK G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  6UFM G   54 C   62'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  6UGG G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  3AL0 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  6JXM G   74 C   82'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  4YCP G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  4WJ4 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  7UQ6 G   64 C   72'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  4X4V G   12 C   20'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  7YSE G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  4MGN G   52 C   60'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  7UZ0 G   68 C   76'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  2CSX G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  8K1E G   39 C   47'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  7VNV G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  3KFU G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAGUC (   1) MLPS  -2.63 deficit   0.27 prct   0.00 CutScore  98.25;  Ed  0, 0
ans =

    ' HL_28252.8  6UGI G   12 C   20'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  2ZUE G  953 C  961'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  3WQY G 1653 C 1661'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  7KJT G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  4YYE G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  2ZZN G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  1J1U G  554 C  562'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  8V1H G   38 C   46'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  5X6B G   52 C   60'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  9DFC G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  5WT1 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  2ZZM G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  4WT8 G   54 C   62'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  4V9Q G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  8Z1P G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  5WWT G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  4TUE G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  5E81 G   54 C   62'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  6CFJ G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAAUC (   1) MLPS  -2.79 deficit   0.43 prct   0.00 CutScore  97.19;  Ed  0, 0
ans =

    ' HL_28252.8  8V1I G   38 C   46'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  4RDX G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  5AH5 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  7MRL G   56 C   64'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  8UO6 G  111 C  119'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  8UO6 G  111 C  119'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  8VU0 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  2BTE G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  8S95 G  133 C  141'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  7LYF G  116 C  124'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  3ZGZ G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  8WND G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  1FFY G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  1QU2 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  8SP9 G  130 C  138'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  6UFG G   54 C   62'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  3OVB G   12 C   20'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  1F7U G  953 C  961'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  6UFH G   54 C   62'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  1FIR G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  1J2B G  954 C  962'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  1GAX G  952 C  960'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  4WSM G   64 C   72'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAGUC (   1) MLPS  -3.06 deficit   0.70 prct   0.00 CutScore  95.44;  Ed  0, 0
ans =

    ' HL_28252.8  4WSM G   64 C   72'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  4YCO G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  3W3S G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  4V90 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  3FOZ G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  1N78 G  553 C  561'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  2DRA G   12 C   20'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  3WFS G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  3TUP G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  5E6M G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  3AM1 G   59 C   67'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  4QEI G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  7U2I G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGAUUC (   1) MLPS  -3.21 deficit   0.85 prct   0.00 CutScore  94.49;  Ed  0, 0
ans =

    ' HL_28252.8  1P6V G   45 C   53'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAUUC (   1) MLPS  -3.64 deficit   1.28 prct   0.00 CutScore  91.67;  Ed  0, 0
ans =

    ' HL_28252.8  3RG5 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAUUC (   1) MLPS  -3.64 deficit   1.28 prct   0.00 CutScore  91.67;  Ed  0, 0
ans =

    ' HL_28252.8  8G9Z G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAUUC (   1) MLPS  -3.64 deficit   1.28 prct   0.00 CutScore  91.67;  Ed  0, 0
ans =

    ' HL_28252.8  8K0Y G   37 C   45'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAUUC (   1) MLPS  -3.64 deficit   1.28 prct   0.00 CutScore  91.67;  Ed  0, 0
ans =

    ' HL_28252.8  3ADD G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCAAUUC (   1) MLPS  -3.64 deficit   1.28 prct   0.00 CutScore  91.67;  Ed  0, 0
ans =

    ' HL_28252.8  1IL2 G  953 C  961'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  9MTS G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  2D6F G  953 C  961'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  4V8Q G   66 C   74'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  1U0B G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  1QF6 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  1B23 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  2DLC G  553 C  561'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUCGACUC (   1) MLPS  -4.00 deficit   1.64 prct   0.00 CutScore  89.30;  Ed  0, 0
ans =

    ' HL_28252.8  2CZJ G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            GUUCGAGCC (   1) MLPS  -5.02 deficit   2.66 prct   0.00 CutScore  82.68;  Ed  0, 0
ans =

    ' HL_28252.8  4GCW G   53 C   61'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  1, 1, MLPS -4.70, deficit  1.61, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            GUGCAAGUC (   1) MLPS  -5.04 deficit   2.68 prct   0.00 CutScore  82.58;  Ed  0, 0
ans =

    ' HL_28252.8  5Y85 G   11 C   19'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGCAAGUC (   1) MLPS  -5.04 deficit   2.68 prct   0.00 CutScore  82.58;  Ed  0, 0
ans =

    ' HL_28252.8  4GXY G   49 C   57'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUUAGAUUC (   1) MLPS  -5.40 deficit   3.04 prct   0.00 CutScore  80.24;  Ed  0, 0
ans =

    ' HL_28252.8  5UD5 G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -5.60 deficit   3.24 prct   0.00 CutScore  78.92;  Ed  0, 0
ans =

    ' HL_28252.8  5AXM G   53 C   61'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -5.60 deficit   3.24 prct   0.00 CutScore  78.92;  Ed  0, 0
ans =

    ' HL_28252.8  7EQJ G   53 C   61'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -5.60 deficit   3.24 prct   0.00 CutScore  78.92;  Ed  0, 0
ans =

    ' HL_28252.8  7K98 G   54 C   62'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -5.60 deficit   3.24 prct   0.00 CutScore  78.92;  Ed  0, 0
ans =

    ' HL_28252.8  3EPH G   53 C   61'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -5.60 deficit   3.24 prct   0.00 CutScore  78.92;  Ed  0, 0
ans =

    ' HL_28252.8  3ICQ G   53 C   61'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUUCGAUCC (   1) MLPS  -5.60 deficit   3.24 prct   0.00 CutScore  78.92;  Ed  0, 0
ans =

    ' HL_28252.8  5IBB G   53 C   61'

 scores better against   1 groups: HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  0, 0, MLPS -3.10, deficit  0.00, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            GUUCGAGAC (   1) MLPS  -6.02 deficit   3.66 prct   0.00 CutScore  76.17;  Ed  0, 0
ans =

    ' HL_28252.8  6CU1 G   24 C   32'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGCAACUC (   1) MLPS  -6.41 deficit   4.05 prct   0.00 CutScore  73.63;  Ed  0, 0
ans =

    ' HL_28252.8  4P5J G   46 C   54'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGCAACUC (   1) MLPS  -6.41 deficit   4.05 prct   0.00 CutScore  73.63;  Ed  0, 0
ans =

    ' HL_28252.8  6MJ0 G   66 C   74'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   1 Equal:   0 Score 0.00            GUGAGAAUC (   1) MLPS  -6.52 deficit   4.16 prct   0.00 CutScore  72.89;  Ed  0, 0
ans =

    ' HL_28252.8  6JQ5 G    6 C   14'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -6.31, deficit  0.88, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUGAGAAUC (   1) MLPS  -6.52 deficit   4.16 prct   0.00 CutScore  72.89;  Ed  0, 0
ans =

    ' HL_28252.8  6JQ6 G    6 C   14'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -6.31, deficit  0.88, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUGAGAAUC (   1) MLPS  -6.52 deficit   4.16 prct   0.00 CutScore  72.89;  Ed  0, 0
ans =

    ' HL_28252.8  6JQ5 G    6 C   14'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -6.31, deficit  0.88, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUGAGAAUC (   1) MLPS  -6.52 deficit   4.16 prct   0.00 CutScore  72.89;  Ed  0, 0
ans =

    ' HL_28252.8  9DFE G 1281 C 1289'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -6.31, deficit  0.88, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUGAGAAUC (   1) MLPS  -6.52 deficit   4.16 prct   0.00 CutScore  72.89;  Ed  0, 0
ans =

    ' HL_28252.8  7A0S G 1294 C 1302'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -6.31, deficit  0.88, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUGAGAAUC (   1) MLPS  -6.52 deficit   4.16 prct   0.00 CutScore  72.89;  Ed  0, 0
ans =

    ' HL_28252.8  4WF9 G 1318 C 1326'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -6.31, deficit  0.88, prct   0.00; 
Better:   1 Equal:   0 Score 0.00            GUGAGAGUC (   1) MLPS  -6.79 deficit   4.43 prct   0.00 CutScore  71.15;  Ed  0, 0
ans =

    ' HL_28252.8  3IGI G   30 C   38'

 scores better against   1 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  0, 0, MLPS -5.80, deficit  0.36, prct   0.00; 
Better:   0 Equal:   0 Score 1.00            GUUCAGAUC (   1) MLPS  -7.19 deficit   4.83 prct   0.00 CutScore  68.58;  Ed  0, 0
ans =

    ' HL_28252.8  1H4S G   53 C   61'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00            GUGCAAGCC (   1) MLPS  -7.43 deficit   5.07 prct   0.00 CutScore  67.01;  Ed  0, 0
ans =

    ' HL_28252.8  5T5A G   21 C   29'

 matches the original group, cWW-tWH-F-F-F-F-F
Better:   2 Equal:   0 Score 0.00            GUGAAACUC (   1) MLPS  -8.60 deficit   6.24 prct   0.00 CutScore  59.38;  Ed  0, 0
ans =

    ' HL_28252.8  2ZNI G   53 C   61'

 scores better against   2 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -6.60, deficit  1.16, prct   0.00; HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  1, 1, MLPS -7.28, deficit  2.52, prct   0.00; 
Better:   3 Equal:   0 Score 0.00            GUGAGAACC (   1) MLPS  -8.92 deficit   6.56 prct   0.00 CutScore  57.33;  Ed  0, 0
ans =

    ' HL_28252.8  4V9F G 1387 C 1395'

 scores better against   3 groups: HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  1, 1, MLPS -7.41, deficit  1.97, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  3, 3, MLPS -7.92, deficit  4.83, prct   0.00; HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  3, 1, MLPS -8.66, deficit  3.90, prct   0.00; 
Better:   5 Equal:   0 Score 0.00            GUGAAAAGC (   1) MLPS -10.35 deficit   7.99 prct   0.00 CutScore  48.00;  Ed  0, 0
ans =

    ' HL_28252.8  5J7L G 1281 C 1289'

 scores better against   5 groups: HL_61996.2,  7 NTs, cWW-tWH-F-F-F                           , Ed  2, 2, MLPS -7.62, deficit  1.80, prct   0.00; HL_93383.1,  9 NTs, cWW-cSH-F-F-F-F-F-F                     , Ed  3, 3, MLPS -7.79, deficit  4.32, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  2, 2, MLPS -9.05, deficit  3.62, prct   0.00; HL_50860.2,  9 NTs, cWW-F-cWH-F-F-F-F                       , Ed  4, 3, MLPS -9.11, deficit  4.47, prct   0.00; HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  2, 2, MLPS -9.49, deficit  4.73, prct   0.00; 
Better:   4 Equal:   0 Score 0.00            AUGAGAACU (   1) MLPS -11.71 deficit   9.35 prct   0.00 CutScore  39.14;  Ed  0, 0
ans =

    ' HL_28252.8  8P9A A 1462 U 1470'

 scores better against   4 groups: HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  3, 1, MLPS -9.06, deficit  4.30, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  3, 1, MLPS -9.59, deficit  4.16, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  5, 3, MLPS -9.94, deficit  6.84, prct   0.00; HL_25061.1,  5 NTs, cWW-F-F-F-F                             , Ed  5, 3, MLPS -11.66, deficit  2.92, prct   0.00; 
Better:   4 Equal:   0 Score 0.00            AUGAGAACU (   1) MLPS -11.71 deficit   9.35 prct   0.00 CutScore  39.14;  Ed  0, 0
ans =

    ' HL_28252.8  8CRE A 1458 U 1466'

 scores better against   4 groups: HL_01609.3,  7 NTs, cWW-tWH-F-F-F                           , Ed  3, 1, MLPS -9.06, deficit  4.30, prct   0.00; HL_27670.2,  6 NTs, cWW-tWH-F-F                             , Ed  3, 1, MLPS -9.59, deficit  4.16, prct   0.00; HL_86012.1,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  5, 3, MLPS -9.94, deficit  6.84, prct   0.00; HL_25061.1,  5 NTs, cWW-F-F-F-F                             , Ed  5, 3, MLPS -11.66, deficit  2.92, prct   0.00; 
Better:  11 Equal:   0 Score 0.00           UUUUGAAAAA (   1) MLPS -14.78 deficit  12.42 prct   0.00 CutScore  19.18;  Ed  0, 0
ans =

    ' HL_28252.8  4V9F U  623 A  632'

 scores better against  11 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  1, 1, MLPS -6.25, deficit  0.53, prct   0.00; HL_41464.2,  7 NTs, cWW-F-F-F-F-F                           , Ed  4, 2, MLPS -10.29, deficit  2.26, prct   0.00; HL_29129.3,  8 NTs, cWW-tWH-F-F-F-F                         , Ed  4, 3, MLPS -11.11, deficit  4.23, prct   0.00; HL_80008.1,  8 NTs, cWW-F-F-F-cSH-F                         , Ed  4, 2, MLPS -11.37, deficit  4.87, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  3, 1, MLPS -12.04, deficit  4.30, prct   0.00; 
Better:   5 Equal:   0 Score 0.00           UUUUGUAUAA (   1) MLPS -15.13 deficit  12.77 prct   0.00 CutScore  16.86;  Ed  0, 0
ans =

    ' HL_28252.8  5J7L U  566 A  575'

 scores better against   5 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 3, MLPS -10.61, deficit  4.89, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -13.25, deficit  5.00, prct   0.00; HL_69139.1,  9 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  4, 3, MLPS -14.09, deficit  4.09, prct   0.00; HL_98252.1,  8 NTs, cWW-tWW-F-F-F-F                         , Ed  5, 3, MLPS -14.34, deficit  7.05, prct   0.00; HL_91503.7,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  5, 3, MLPS -14.41, deficit  7.42, prct   0.00; 
Better:   7 Equal:   0 Score 0.00           UCUUGAAACA (   1) MLPS -17.58 deficit  15.22 prct   0.00 CutScore   0.91;  Ed  0, 0
ans =

    ' HL_28252.8  8CRE U  638 A  647'

 scores better against   7 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  2, 2, MLPS -8.13, deficit  2.41, prct   0.00; HL_75293.5, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -9.13, deficit  0.82, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -12.04, deficit  4.30, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -12.33, deficit  6.75, prct   0.00; HL_01962.2,  7 NTs, cWW-tWH-tWH-F                           , Ed  3, 3, MLPS -12.88, deficit  6.22, prct   0.00; 
Better:   7 Equal:   0 Score 0.00           UCUUGAAACA (   1) MLPS -17.58 deficit  15.22 prct   0.00 CutScore   0.91;  Ed  0, 0
ans =

    ' HL_28252.8  8P9A U  640 A  649'

 scores better against   7 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  2, 2, MLPS -8.13, deficit  2.41, prct   0.00; HL_75293.5, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -9.13, deficit  0.82, prct   0.00; HL_78197.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -12.04, deficit  4.30, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -12.33, deficit  6.75, prct   0.00; HL_01962.2,  7 NTs, cWW-tWH-tWH-F                           , Ed  3, 3, MLPS -12.88, deficit  6.22, prct   0.00; 
Better:   4 Equal:   0 Score 0.00           UAUUGAAGCA (   1) MLPS -18.20 deficit  15.83 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_28252.8  7A0S U  575 A  584'

 scores better against   4 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 3, MLPS -11.66, deficit  5.94, prct   0.00; HL_75293.5, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -13.78, deficit  5.46, prct   0.00; HL_19210.3, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  4, 2, MLPS -14.77, deficit  9.95, prct   0.00; HL_67079.1,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  5, 3, MLPS -16.56, deficit  5.94, prct   0.00; 
Better:   4 Equal:   0 Score 0.00           UAUUGAAGCA (   1) MLPS -18.20 deficit  15.83 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_28252.8  9DFE U  566 A  575'

 scores better against   4 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 3, MLPS -11.66, deficit  5.94, prct   0.00; HL_75293.5, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -13.78, deficit  5.46, prct   0.00; HL_19210.3, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  4, 2, MLPS -14.77, deficit  9.95, prct   0.00; HL_67079.1,  9 NTs, cWW-F-F-F-F-F-F-F                       , Ed  5, 3, MLPS -16.56, deficit  5.94, prct   0.00; 
Better:   7 Equal:   0 Score 0.00           UUUUGUAGAA (   1) MLPS -18.53 deficit  16.17 prct   0.00 CutScore  -0.00;  Ed  0, 0
ans =

    ' HL_28252.8  4WF9 U  609 A  618'

 scores better against   7 groups: HL_88205.2,  7 NTs, cWW-cWS-tSW-F-F                         , Ed  3, 3, MLPS -11.70, deficit  5.99, prct   0.00; HL_83632.1,  8 NTs, cWW-F-F-F-F-F-F                         , Ed  4, 2, MLPS -12.07, deficit  6.49, prct   0.00; HL_99867.1, 10 NTs, cWW-F-F-F-F-F-F-F-F                     , Ed  5, 3, MLPS -12.36, deficit  3.77, prct   0.00; HL_21372.1,  5 NTs, cWW-F-cSH-F-F                           , Ed  4, 2, MLPS -13.25, deficit  5.00, prct   0.00; HL_98864.1, 10 NTs, cWW-tWH-F-F-F-F-F-F                     , Ed  5, 3, MLPS -13.89, deficit  9.26, prct   0.00; 
Group   9 is from HL_02887.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_02887.3
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tWH-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           CUGCAACCCG (   1) MLPS  -5.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_02887.3  4LFB C 1314 G 1323'

 matches the original group, cWW-tWH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           CUGCAACUCG (   1) MLPS  -5.34 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_02887.3  5J7L C 1314 G 1323'

 matches the original group, cWW-tWH-F-F-F-F-F-F
Group 247 is from HL_98864.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_98864.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tWH-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00           GUCCCAAGCC (   1) MLPS  -4.63 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_98864.1  4OJI G   23 C   32'

 matches the original group, cWW-tWH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUCCCAAGCC (   1) MLPS  -4.63 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_98864.1  4QJD G   43 C   52'

 matches the original group, cWW-tWH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUCCUAAGCC (   1) MLPS  -5.14 deficit   0.51 prct   0.00 CutScore  97.44;  Ed  0, 0
ans =

    ' HL_98864.1  4RGE G   29 C   38'

 matches the original group, cWW-tWH-F-F-F-F-F-F
Better:   0 Equal:   0 Score 1.00           GUAGGUAGUC (   1) MLPS  -8.53 deficit   3.90 prct   0.00 CutScore  80.44;  Ed  0, 0
ans =

    ' HL_98864.1  8UIW G   50 C   59'

 matches the original group, cWW-tWH-F-F-F-F-F-F
Group   6 is from HL_02483.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_02483.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-tWH-F-cSH-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00         UGAUCACGAAGG (   1) MLPS  -7.78 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_02483.1  4PKD U   92 G  103'

 matches the original group, cWW-tWH-F-cSH-F-F-F
Group 179 is from HL_74055.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_74055.2
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      CUGAAAGCAUCUAAG (   1) MLPS  -6.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74055.2  5J7L C 2745 G 2759'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Better:   0 Equal:   0 Score 1.00      CUGAAAGCAUCUAAG (   1) MLPS  -6.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74055.2  9DFE C 2745 G 2759'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Better:   0 Equal:   0 Score 1.00      CUGAAAGCAUCUAAG (   1) MLPS  -6.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74055.2  4WF9 C 2772 G 2786'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Better:   0 Equal:   0 Score 1.00      CUGAAAGCAUCUAAG (   1) MLPS  -6.14 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_74055.2  7A0S C 2725 G 2739'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Better:   0 Equal:   0 Score 1.00      CUGAACGCAUCUAAG (   1) MLPS  -6.29 deficit   0.15 prct   0.00 CutScore  99.31;  Ed  0, 0
ans =

    ' HL_74055.2  4V9F C 2780 G 2794'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Better:   0 Equal:   0 Score 1.00      CUGAACGCCUCUAAG (   1) MLPS  -7.07 deficit   0.94 prct   0.00 CutScore  95.72;  Ed  0, 0
ans =

    ' HL_74055.2  8CRE C 3082 G 3096'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Better:   0 Equal:   0 Score 1.00      CUGAACGCCUCUAAG (   1) MLPS  -7.07 deficit   0.94 prct   0.00 CutScore  95.72;  Ed  0, 0
ans =

    ' HL_74055.2  8P9A C 3110 G 3124'

 matches the original group, cWW-tWH-cWH-tSH-tHW-tHW-tSW
Group  56 is from HL_21400.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_21400.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 AGGUGGGUGGUGUGGAGGAGUAU (   1) MLPS  -7.09 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_21400.1  8EYU A   16 U   38'

 matches the original group, cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH
Group   5 is from HL_01962.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_01962.2
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tWH-tWH-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          UUUAUUAAAAA (   1) MLPS  -6.65 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_01962.2  5J7L U 1777 A 1787'

 matches the original group, cWW-tWH-tWH-F
Better:   0 Equal:   0 Score 1.00          UUUAUCAAAAA (   1) MLPS  -7.27 deficit   0.62 prct   0.00 CutScore  96.33;  Ed  0, 0
ans =

    ' HL_01962.2  4WF9 U 1804 A 1814'

 matches the original group, cWW-tWH-tWH-F
Better:   0 Equal:   0 Score 1.00          UCUAAUUAAAA (   1) MLPS  -7.67 deficit   1.02 prct   0.00 CutScore  93.97;  Ed  0, 0
ans =

    ' HL_01962.2  8CRE U 2113 A 2123'

 matches the original group, cWW-tWH-tWH-F
Better:   0 Equal:   0 Score 1.00          UCUAAUUAAAA (   1) MLPS  -7.67 deficit   1.02 prct   0.00 CutScore  93.97;  Ed  0, 0
ans =

    ' HL_01962.2  8P9A U 2135 A 2145'

 matches the original group, cWW-tWH-tWH-F
Better:   0 Equal:   0 Score 1.00          UUUACCAAAAA (   1) MLPS  -7.89 deficit   1.24 prct   0.00 CutScore  92.66;  Ed  0, 0
ans =

    ' HL_01962.2  9DFE U 1777 A 1787'

 matches the original group, cWW-tWH-tWH-F
Better:   0 Equal:   0 Score 1.00          UCUAGUAACAA (   1) MLPS  -8.30 deficit   1.64 prct   0.00 CutScore  90.26;  Ed  0, 0
ans =

    ' HL_01962.2  4V9F U 1833 A 1843'

 matches the original group, cWW-tWH-tWH-F
Group 143 is from HL_58539.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_58539.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     UUAAAUUGGGCACUUG (   1) MLPS -10.43 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_58539.1  3Q3Z U   31 G   46'

 matches the original group, cWW-tWS-F-tHW-F-F-F-F-F-F-F-F
Group 206 is from HL_83808.4 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_83808.4
This group is considered to be structured ***************************
Number of NTs:  7  Signature: cWW-tWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00            CUCCUCGCG (   1) MLPS  -5.57 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_83808.4  3NKB C   20 G   28'

 matches the original group, cWW-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00           CUCCUCGCUG (   1) MLPS  -5.93 deficit   0.36 prct   0.00 CutScore  97.98;  Ed  0, 0
ans =

    ' HL_83808.4  4PR6 C  119 G  128'

 matches the original group, cWW-tWW-F-F-F
Better:   0 Equal:   0 Score 1.00           CUCCUCGCUG (   1) MLPS  -5.93 deficit   0.36 prct   0.00 CutScore  97.98;  Ed  0, 0
ans =

    ' HL_83808.4  4PRF C  119 G  128'

 matches the original group, cWW-tWW-F-F-F
Group 246 is from HL_98252.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/HL_98252.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-tWW-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          AUUAUUUAUUU (   1) MLPS  -7.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' HL_98252.1  5K36 A    2 U   12'

 matches the original group, cWW-tWW-F-F-F-F
Sequence   19 in group HL_01609.3 with cutoff score    47.0635 does better against group HL_28252.8 cutoff score    78.9157; GUUCGAUCC
Sequence   19 in group HL_01609.3 with cutoff score    47.0635 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence   19 in group HL_01609.3 with cutoff score    47.0635 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence   20 in group HL_01609.3 with cutoff score    11.3687 does better against group HL_38046.1 cutoff score    15.1974; GUCAUCAGC
Sequence   20 in group HL_01609.3 with cutoff score    11.3687 does better against group HL_38808.1 cutoff score    17.8075; GUCAUCAGC
Sequence   20 in group HL_01609.3 with cutoff score    11.3687 does better against group HL_83808.4 cutoff score    25.0473; GUCAUCAGC
Sequence   20 in group HL_01609.3 with cutoff score    11.3687 does better against group HL_93383.1 cutoff score    22.8470; GUCAUCAGC
Sequence   20 in group HL_01609.3 with cutoff score    11.3687 does better against group HL_97733.1 cutoff score    15.7728; GUCAUCAGC
Sequence   50 in group HL_04259.3 with cutoff score    65.1250 does better against group HL_06059.6 cutoff score    83.4335; GCUUCAAAC
Sequence   50 in group HL_04259.3 with cutoff score    65.1250 does better against group HL_73266.9 cutoff score    71.3062; GCUUCAAAC
Sequence   54 in group HL_04642.1 with cutoff score    97.1519 does better against group HL_49941.1 cutoff score   100.0000; CAGGUGGUUAG
Sequence   55 in group HL_04642.1 with cutoff score    93.9089 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence   59 in group HL_04783.2 with cutoff score    98.9720 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence   59 in group HL_04783.2 with cutoff score    98.9720 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence   61 in group HL_04783.2 with cutoff score    67.5250 does better against group HL_93535.1 cutoff score    82.6987; GGAACAC
Sequence   62 in group HL_04783.2 with cutoff score    42.3906 does better against group HL_06059.6 cutoff score    89.4191; AUUGAAAAU
Sequence   62 in group HL_04783.2 with cutoff score    42.3906 does better against group HL_80008.1 cutoff score    68.9297; AUUGAAAAU
Sequence   62 in group HL_04783.2 with cutoff score    42.3906 does better against group HL_83632.1 cutoff score    67.9671; AUUGAAAAU
Sequence   62 in group HL_04783.2 with cutoff score    42.3906 does better against group HL_88205.2 cutoff score    43.0893; AUUGAAAAU
Sequence   63 in group HL_04783.2 with cutoff score    32.3326 does better against group HL_06059.6 cutoff score    82.1868; AUUGCAAAU
Sequence   63 in group HL_04783.2 with cutoff score    32.3326 does better against group HL_18565.1 cutoff score    35.5734; AUUGCAAAU
Sequence   63 in group HL_04783.2 with cutoff score    32.3326 does better against group HL_50860.2 cutoff score    37.1996; AUUGCAAAU
Sequence   63 in group HL_04783.2 with cutoff score    32.3326 does better against group HL_80008.1 cutoff score    99.2902; AUUGCAAAU
Sequence   63 in group HL_04783.2 with cutoff score    32.3326 does better against group HL_83632.1 cutoff score    71.5565; AUUGCAAAU
Sequence   64 in group HL_04783.2 with cutoff score    77.4610 does better against group HL_56676.1 cutoff score    92.2398; UGUAAG
Sequence   64 in group HL_04783.2 with cutoff score    77.4610 does better against group HL_93535.1 cutoff score    90.8568; UGUAAG
Sequence   66 in group HL_04783.2 with cutoff score    92.5531 does better against group HL_13189.1 cutoff score   100.0000; CGUAG
Sequence   73 in group HL_06059.6 with cutoff score    82.1868 does better against group HL_80008.1 cutoff score    99.2902; AUUGCAAAU
Sequence   88 in group HL_06059.6 with cutoff score    81.0143 does better against group HL_83632.1 cutoff score    93.5056; ACUCCAGAU
Sequence  100 in group HL_06059.6 with cutoff score    82.1868 does better against group HL_80008.1 cutoff score    99.2902; AUUGCAAAU
Sequence  111 in group HL_06059.6 with cutoff score    77.4998 does better against group HL_83632.1 cutoff score    87.8081; CUUGCCAAG
Sequence  118 in group HL_06059.6 has cutoff score    -0.0000; UCAAGCCUAG
Sequence  118 in group HL_06059.6 with cutoff score    -0.0000 does better against group HL_74292.1 cutoff score    11.3825; UCAAGCCUAG
Sequence  118 in group HL_06059.6 with cutoff score    -0.0000 does better against group HL_77600.2 cutoff score    63.5882; UCAAGCCUAG
Sequence  119 in group HL_06059.6 with cutoff score    88.7033 does better against group HL_73266.9 cutoff score    95.5015; ACUGUAAAU
Sequence  119 in group HL_06059.6 with cutoff score    88.7033 does better against group HL_77082.1 cutoff score    90.4778; ACUGUAAAU
Sequence  120 in group HL_06059.6 with cutoff score    82.1868 does better against group HL_80008.1 cutoff score    99.2902; AUUGCAAAU
Sequence  121 in group HL_06059.6 with cutoff score    37.5035 does better against group HL_80362.1 cutoff score    46.0570; CUCGACACG
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_32346.4 cutoff score    94.6525; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_32392.1 cutoff score    50.0897; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_38901.2 cutoff score    51.9258; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_46501.1 cutoff score    62.4111; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_48417.5 cutoff score    54.5111; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_48778.2 cutoff score    76.6592; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_56334.1 cutoff score    71.6858; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_69752.2 cutoff score    64.9058; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_70782.2 cutoff score    67.7805; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_75660.5 cutoff score    50.4305; AUUUU
Sequence  135 in group HL_07886.3 with cutoff score    48.0731 does better against group HL_86870.2 cutoff score    78.1252; AUUUU
Sequence  141 in group HL_07951.3 with cutoff score    67.2193 does better against group HL_04642.1 cutoff score    71.4519; CAGCUGGUUAG
Sequence  141 in group HL_07951.3 with cutoff score    67.2193 does better against group HL_09260.2 cutoff score    68.5080; CAGCUGGUUAG
Sequence  141 in group HL_07951.3 with cutoff score    67.2193 does better against group HL_49941.1 cutoff score    83.4238; CAGCUGGUUAG
Sequence  156 in group HL_10453.3 with cutoff score    80.0372 does better against group HL_06059.6 cutoff score    87.3432; GCUGCGAAC
Sequence  157 in group HL_10453.3 with cutoff score    80.0372 does better against group HL_06059.6 cutoff score    87.3432; GCUGCGAAC
Sequence  160 in group HL_10453.3 with cutoff score    52.7740 does better against group HL_77082.1 cutoff score    69.1330; GCGAUCAC
Sequence  160 in group HL_10453.3 with cutoff score    52.7740 does better against group HL_78197.1 cutoff score    78.7083; GCGAUCAC
Sequence  161 in group HL_10453.3 with cutoff score    51.9784 does better against group HL_25967.2 cutoff score    55.8161; GUUUAAUC
Sequence  161 in group HL_10453.3 with cutoff score    51.9784 does better against group HL_50318.1 cutoff score    74.1423; GUUUAAUC
Sequence  180 in group HL_13963.3 with cutoff score    39.3053 does better against group HL_09452.1 cutoff score    56.2359; GCUUAUGC
Sequence  180 in group HL_13963.3 with cutoff score    39.3053 does better against group HL_20535.2 cutoff score    46.0188; GCUUAUGC
Sequence  180 in group HL_13963.3 with cutoff score    39.3053 does better against group HL_93324.4 cutoff score    44.0682; GCUUAUGC
Sequence  190 in group HL_16398.2 with cutoff score    83.0424 does better against group HL_78284.1 cutoff score    84.0744; GACCUAGAUCACCC
Sequence  211 in group HL_20167.2 with cutoff score    44.8367 does better against group HL_20535.2 cutoff score    56.8567; GUUCGAAUC
Sequence  211 in group HL_20167.2 with cutoff score    44.8367 does better against group HL_28252.8 cutoff score   100.0000; GUUCGAAUC
Sequence  211 in group HL_20167.2 with cutoff score    44.8367 does better against group HL_38808.1 cutoff score    45.2755; GUUCGAAUC
Sequence  211 in group HL_20167.2 with cutoff score    44.8367 does better against group HL_61996.2 cutoff score    61.9313; GUUCGAAUC
Sequence  211 in group HL_20167.2 with cutoff score    44.8367 does better against group HL_87463.1 cutoff score    47.9976; GUUCGAAUC
Sequence  212 in group HL_20167.2 with cutoff score    51.8772 does better against group HL_01609.3 cutoff score    54.5562; AUGAGAAUU
Sequence  212 in group HL_20167.2 with cutoff score    51.8772 does better against group HL_27670.2 cutoff score    76.5677; AUGAGAAUU
Sequence  212 in group HL_20167.2 with cutoff score    51.8772 does better against group HL_28252.8 cutoff score    54.7125; AUGAGAAUU
Sequence  228 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence  228 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_45175.1 cutoff score    89.2561; CAGUCGGUAG
Sequence  228 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence  228 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_66853.7 cutoff score    93.8442; CAGUCGGUAG
Sequence  230 in group HL_20811.4 with cutoff score    35.2840 does better against group HL_66853.7 cutoff score    46.6245; CAAUUGGAUAG
Sequence  231 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence  231 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_45175.1 cutoff score    89.2561; CAGUCGGUAG
Sequence  231 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence  231 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_66853.7 cutoff score    93.8442; CAGUCGGUAG
Sequence  232 in group HL_20811.4 with cutoff score    88.5913 does better against group HL_66853.7 cutoff score    91.8465; CAAUGGUAG
Sequence  233 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence  233 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_45175.1 cutoff score    89.2561; CAGUCGGUAG
Sequence  233 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence  233 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_66853.7 cutoff score    93.8442; CAGUCGGUAG
Sequence  236 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence  236 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_45175.1 cutoff score    89.2561; CAGUCGGUAG
Sequence  236 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence  236 in group HL_20811.4 with cutoff score    87.0906 does better against group HL_66853.7 cutoff score    93.8442; CAGUCGGUAG
Sequence  237 in group HL_20811.4 with cutoff score    76.5544 does better against group HL_58224.1 cutoff score    76.5701; CAGCCGGUAG
Sequence  240 in group HL_20811.4 with cutoff score    63.9915 does better against group HL_46501.1 cutoff score    92.7037; CUGAAG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_04783.2 cutoff score    40.5390; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_37824.7 cutoff score    42.5311; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_38901.2 cutoff score    37.8835; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_50006.2 cutoff score    30.8715; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_52953.3 cutoff score    41.8619; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_53890.2 cutoff score    61.5744; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_65794.5 cutoff score    37.4064; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_75660.5 cutoff score    36.7466; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_80709.3 cutoff score    32.5588; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_82710.2 cutoff score    45.8255; CGAACG
Sequence  269 in group HL_22584.6 with cutoff score    26.5203 does better against group HL_93535.1 cutoff score    73.7982; CGAACG
Sequence  324 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  346 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence  346 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence  359 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence  359 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence  362 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence  362 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence  370 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  374 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  375 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  376 in group HL_28252.8 with cutoff score    71.1488 does better against group HL_27670.2 cutoff score    97.2073; GUGAGAGUC
Sequence  385 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence  385 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence  388 in group HL_28252.8 with cutoff score    72.8949 does better against group HL_27670.2 cutoff score    93.2939; GUGAGAAUC
Sequence  389 in group HL_28252.8 with cutoff score    72.8949 does better against group HL_27670.2 cutoff score    93.2939; GUGAGAAUC
Sequence  390 in group HL_28252.8 with cutoff score    72.8949 does better against group HL_27670.2 cutoff score    93.2939; GUGAGAAUC
Sequence  398 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence  398 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence  409 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  411 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  414 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  416 in group HL_28252.8 with cutoff score    72.8949 does better against group HL_27670.2 cutoff score    93.2939; GUGAGAAUC
Sequence  418 in group HL_28252.8 with cutoff score    48.0015 does better against group HL_61996.2 cutoff score    50.6938; GUGAAAAGC
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_01962.2 cutoff score    32.4315; UUUUGAAAAA
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_06059.6 cutoff score    20.2598; UUUUGAAAAA
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_29129.3 cutoff score    22.2278; UUUUGAAAAA
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_41464.2 cutoff score    24.1417; UUUUGAAAAA
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_78197.1 cutoff score    29.5080; UUUUGAAAAA
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_80008.1 cutoff score    19.4772; UUUUGAAAAA
Sequence  420 in group HL_28252.8 with cutoff score    19.1767 does better against group HL_88205.2 cutoff score    76.4896; UUUUGAAAAA
Sequence  422 in group HL_28252.8 with cutoff score    39.1431 does better against group HL_01609.3 cutoff score    41.6956; AUGAGAACU
Sequence  422 in group HL_28252.8 with cutoff score    39.1431 does better against group HL_27670.2 cutoff score    45.1690; AUGAGAACU
Sequence  423 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_39243.1 cutoff score    80.0303; GUUCGAUCC
Sequence  423 in group HL_28252.8 with cutoff score    78.9157 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence  424 in group HL_28252.8 with cutoff score    72.8949 does better against group HL_27670.2 cutoff score    93.2939; GUGAGAAUC
Sequence  425 in group HL_28252.8 with cutoff score    89.3018 does better against group HL_20535.2 cutoff score   100.0000; GUUCGACUC
Sequence  427 in group HL_28252.8 has cutoff score    -0.0000; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_21372.1 cutoff score     9.2559; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_41543.1 cutoff score     8.8582; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_83632.1 cutoff score    12.2079; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_88205.2 cutoff score     0.1531; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_91503.7 cutoff score     2.7265; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_98864.1 cutoff score     8.4294; UUUUGUAGAA
Sequence  427 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_99867.1 cutoff score    10.0056; UUUUGUAGAA
Sequence  430 in group HL_28252.8 with cutoff score    39.1431 does better against group HL_01609.3 cutoff score    41.6956; AUGAGAACU
Sequence  430 in group HL_28252.8 with cutoff score    39.1431 does better against group HL_27670.2 cutoff score    45.1690; AUGAGAACU
Sequence  431 in group HL_28252.8 with cutoff score    72.8949 does better against group HL_27670.2 cutoff score    93.2939; GUGAGAAUC
Sequence  435 in group HL_28252.8 has cutoff score    -0.0000; UAUUGAAGCA
Sequence  435 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_19210.3 cutoff score    11.7844; UAUUGAAGCA
Sequence  435 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_67079.1 cutoff score     6.2950; UAUUGAAGCA
Sequence  435 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_75293.5 cutoff score     3.3171; UAUUGAAGCA
Sequence  435 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_88205.2 cutoff score     0.4790; UAUUGAAGCA
Sequence  436 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_01962.2 cutoff score     9.7600; UCUUGAAACA
Sequence  436 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_06226.4 cutoff score     3.5201; UCUUGAAACA
Sequence  436 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_55305.1 cutoff score    14.7595; UCUUGAAACA
Sequence  436 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_75293.5 cutoff score    34.3432; UCUUGAAACA
Sequence  436 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_83632.1 cutoff score    10.3844; UCUUGAAACA
Sequence  436 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_88205.2 cutoff score    43.9713; UCUUGAAACA
Sequence  438 in group HL_28252.8 has cutoff score    -0.0000; UAUUGAAGCA
Sequence  438 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_19210.3 cutoff score    11.7844; UAUUGAAGCA
Sequence  438 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_67079.1 cutoff score     6.2950; UAUUGAAGCA
Sequence  438 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_75293.5 cutoff score     3.3171; UAUUGAAGCA
Sequence  438 in group HL_28252.8 with cutoff score    -0.0000 does better against group HL_88205.2 cutoff score     0.4790; UAUUGAAGCA
Sequence  440 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_01962.2 cutoff score     9.7600; UCUUGAAACA
Sequence  440 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_06226.4 cutoff score     3.5201; UCUUGAAACA
Sequence  440 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_55305.1 cutoff score    14.7595; UCUUGAAACA
Sequence  440 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_75293.5 cutoff score    34.3432; UCUUGAAACA
Sequence  440 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_83632.1 cutoff score    10.3844; UCUUGAAACA
Sequence  440 in group HL_28252.8 with cutoff score     0.9085 does better against group HL_88205.2 cutoff score    43.9713; UCUUGAAACA
Sequence  441 in group HL_28252.8 with cutoff score    57.3256 does better against group HL_27670.2 cutoff score    61.8952; GUGAGAACC
Sequence  462 in group HL_30068.2 with cutoff score    97.7688 does better against group HL_67667.2 cutoff score   100.0000; CUGUUCG
Sequence  463 in group HL_30068.2 with cutoff score    97.7688 does better against group HL_67667.2 cutoff score   100.0000; CUGUUCG
Sequence  464 in group HL_30068.2 with cutoff score    97.7688 does better against group HL_67667.2 cutoff score   100.0000; CUGUUCG
Sequence  465 in group HL_30068.2 with cutoff score    97.8216 does better against group HL_67667.2 cutoff score    98.4216; UUGUUCA
Sequence  466 in group HL_30068.2 with cutoff score    97.8216 does better against group HL_67667.2 cutoff score    98.4216; UUGUUCA
Sequence  467 in group HL_30068.2 with cutoff score    97.7688 does better against group HL_67667.2 cutoff score   100.0000; CUGUUCG
Sequence  468 in group HL_30068.2 with cutoff score    69.4514 does better against group HL_80922.2 cutoff score    95.6486; GGAAUAC
Sequence  476 in group HL_30680.3 with cutoff score    42.7591 does better against group HL_31585.4 cutoff score    52.9971; UUUCCAG
Sequence  483 in group HL_30680.3 with cutoff score    11.8795 does better against group HL_07951.3 cutoff score    31.4561; GACGGACAC
Sequence  483 in group HL_30680.3 with cutoff score    11.8795 does better against group HL_50860.2 cutoff score    68.1738; GACGGACAC
Sequence  483 in group HL_30680.3 with cutoff score    11.8795 does better against group HL_97733.1 cutoff score    21.5652; GACGGACAC
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_06059.6 cutoff score    65.7116; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_15802.1 cutoff score    48.7515; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_18565.1 cutoff score    72.1231; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_38808.1 cutoff score    37.6523; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_64690.6 cutoff score    20.1868; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_77082.1 cutoff score    16.7797; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_80599.2 cutoff score    23.7978; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_83632.1 cutoff score    68.8364; ACUCAAGAU
Sequence  484 in group HL_30680.3 with cutoff score    16.4319 does better against group HL_87553.1 cutoff score    20.5576; ACUCAAGAU
Sequence  496 in group HL_31585.4 with cutoff score    46.4040 does better against group HL_66103.1 cutoff score    56.8567; CUGCGUG
Sequence  498 in group HL_31585.4 with cutoff score    12.2899 does better against group HL_15802.1 cutoff score    21.1990; UUCGGGGA
Sequence  498 in group HL_31585.4 with cutoff score    12.2899 does better against group HL_59330.1 cutoff score    39.4520; UUCGGGGA
Sequence  498 in group HL_31585.4 with cutoff score    12.2899 does better against group HL_85367.2 cutoff score    15.0983; UUCGGGGA
Sequence  499 in group HL_31585.4 with cutoff score    71.1295 does better against group HL_78197.1 cutoff score   100.0000; GGUUGGCC
Sequence  501 in group HL_31585.4 with cutoff score    69.5164 does better against group HL_04259.3 cutoff score    70.8381; GCUAAAAC
Sequence  501 in group HL_31585.4 with cutoff score    69.5164 does better against group HL_77082.1 cutoff score    86.8352; GCUAAAAC
Sequence  509 in group HL_32346.4 with cutoff score    83.1851 does better against group HL_75660.5 cutoff score    97.0570; CAAUG
Sequence  509 in group HL_32346.4 with cutoff score    83.1851 does better against group HL_76094.1 cutoff score   100.0000; CAAUG
Sequence  509 in group HL_32346.4 with cutoff score    83.1851 does better against group HL_86870.2 cutoff score    86.7629; CAAUG
Sequence  510 in group HL_32346.4 with cutoff score    86.1075 does better against group HL_43517.1 cutoff score   100.0000; CUUCG
Sequence  512 in group HL_32346.4 with cutoff score    89.8274 does better against group HL_48778.2 cutoff score    90.0754; UUCA
Sequence  512 in group HL_32346.4 with cutoff score    89.8274 does better against group HL_78677.1 cutoff score    97.1459; UUCA
Sequence  514 in group HL_32346.4 with cutoff score    97.6529 does better against group HL_27483.1 cutoff score   100.0000; GGUC
Sequence  516 in group HL_32346.4 with cutoff score    91.7004 does better against group HL_48778.2 cutoff score    98.5458; CUCG
Sequence  516 in group HL_32346.4 with cutoff score    91.7004 does better against group HL_78677.1 cutoff score    95.5727; CUCG
Sequence  518 in group HL_32392.1 with cutoff score    92.7037 does better against group HL_50006.2 cutoff score    97.8224; UUUCGA
Sequence  518 in group HL_32392.1 with cutoff score    92.7037 does better against group HL_56676.1 cutoff score   100.0000; UUUCGA
Sequence  550 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_32392.1 cutoff score    91.2136; GUUCGC
Sequence  550 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_50006.2 cutoff score    98.4927; GUUCGC
Sequence  550 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_56676.1 cutoff score    98.7324; GUUCGC
Sequence  553 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_32392.1 cutoff score    91.2136; GUUCGC
Sequence  553 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_50006.2 cutoff score    98.4927; GUUCGC
Sequence  553 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_56676.1 cutoff score    98.7324; GUUCGC
Sequence  555 in group HL_34617.5 with cutoff score    89.7559 does better against group HL_32392.1 cutoff score    91.3138; AUUCGU
Sequence  555 in group HL_34617.5 with cutoff score    89.7559 does better against group HL_50006.2 cutoff score    97.7410; AUUCGU
Sequence  555 in group HL_34617.5 with cutoff score    89.7559 does better against group HL_56676.1 cutoff score    98.5496; AUUCGU
Sequence  558 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_32392.1 cutoff score    91.2136; GUUCGC
Sequence  558 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_50006.2 cutoff score    98.4927; GUUCGC
Sequence  558 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_56676.1 cutoff score    98.7324; GUUCGC
Sequence  566 in group HL_34617.5 with cutoff score    31.3302 does better against group HL_53890.2 cutoff score    43.6776; CCAAGG
Sequence  566 in group HL_34617.5 with cutoff score    31.3302 does better against group HL_59843.1 cutoff score    65.4485; CCAAGG
Sequence  583 in group HL_34617.5 with cutoff score    89.7559 does better against group HL_32392.1 cutoff score    91.3138; AUUCGU
Sequence  583 in group HL_34617.5 with cutoff score    89.7559 does better against group HL_50006.2 cutoff score    97.7410; AUUCGU
Sequence  583 in group HL_34617.5 with cutoff score    89.7559 does better against group HL_56676.1 cutoff score    98.5496; AUUCGU
Sequence  584 in group HL_34617.5 with cutoff score    31.3302 does better against group HL_53890.2 cutoff score    43.6776; CCAAGG
Sequence  584 in group HL_34617.5 with cutoff score    31.3302 does better against group HL_59843.1 cutoff score    65.4485; CCAAGG
Sequence  589 in group HL_34617.5 with cutoff score    59.6329 does better against group HL_50006.2 cutoff score    83.1035; AUUUGU
Sequence  589 in group HL_34617.5 with cutoff score    59.6329 does better against group HL_81100.2 cutoff score    67.6204; AUUUGU
Sequence  590 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_32392.1 cutoff score    91.2136; GUUCGC
Sequence  590 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_50006.2 cutoff score    98.4927; GUUCGC
Sequence  590 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_56676.1 cutoff score    98.7324; GUUCGC
Sequence  598 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_32392.1 cutoff score    91.2136; GUUCGC
Sequence  598 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_50006.2 cutoff score    98.4927; GUUCGC
Sequence  598 in group HL_34617.5 with cutoff score    90.7018 does better against group HL_56676.1 cutoff score    98.7324; GUUCGC
Sequence  599 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_13963.3 cutoff score    66.3087; CGUGAG
Sequence  599 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_37824.7 cutoff score    67.6361; CGUGAG
Sequence  599 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  599 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_53890.2 cutoff score    51.0090; CGUGAG
Sequence  599 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_59843.1 cutoff score    51.4796; CGUGAG
Sequence  599 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_93535.1 cutoff score    59.5021; CGUGAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_04783.2 cutoff score    50.0635; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_13189.1 cutoff score    28.2496; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_13963.3 cutoff score    63.6633; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_48417.5 cutoff score    44.6547; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_50006.2 cutoff score    27.7649; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_53890.2 cutoff score    56.6632; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_56334.1 cutoff score    33.6669; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_62934.1 cutoff score    51.2410; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_65794.5 cutoff score    61.5756; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_66103.1 cutoff score    44.1833; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_70782.2 cutoff score    25.5358; CGCUAG
Sequence  600 in group HL_34617.5 with cutoff score    21.6128 does better against group HL_80709.3 cutoff score    38.6538; CGCUAG
Sequence  602 in group HL_34617.5 has cutoff score    -0.0000; ACAGAUU
Sequence  602 in group HL_34617.5 with cutoff score    -0.0000 does better against group HL_10453.3 cutoff score     0.0823; ACAGAUU
Sequence  602 in group HL_34617.5 with cutoff score    -0.0000 does better against group HL_39243.1 cutoff score    23.9431; ACAGAUU
Sequence  602 in group HL_34617.5 with cutoff score    -0.0000 does better against group HL_50006.2 cutoff score     2.6611; ACAGAUU
Sequence  602 in group HL_34617.5 with cutoff score    -0.0000 does better against group HL_50537.6 cutoff score    26.0734; ACAGAUU
Sequence  602 in group HL_34617.5 with cutoff score    -0.0000 does better against group HL_57176.2 cutoff score    45.4737; ACAGAUU
Sequence  602 in group HL_34617.5 with cutoff score    -0.0000 does better against group HL_99748.1 cutoff score    30.0381; ACAGAUU
Sequence  604 in group HL_34617.5 with cutoff score    51.7358 does better against group HL_13963.3 cutoff score    63.6633; CGCCAG
Sequence  604 in group HL_34617.5 with cutoff score    51.7358 does better against group HL_53890.2 cutoff score    53.1214; CGCCAG
Sequence  604 in group HL_34617.5 with cutoff score    51.7358 does better against group HL_65794.5 cutoff score    98.5316; CGCCAG
Sequence  605 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_13963.3 cutoff score    66.3087; CGUGAG
Sequence  605 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_37824.7 cutoff score    67.6361; CGUGAG
Sequence  605 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  605 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_53890.2 cutoff score    51.0090; CGUGAG
Sequence  605 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_59843.1 cutoff score    51.4796; CGUGAG
Sequence  605 in group HL_34617.5 with cutoff score    50.4682 does better against group HL_93535.1 cutoff score    59.5021; CGUGAG
Sequence  646 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  646 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  646 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  646 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  646 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  649 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  649 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  649 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  649 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  650 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  650 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  650 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  650 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  654 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  654 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  654 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  654 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  655 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  655 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  655 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  655 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  655 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  658 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  658 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  658 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  658 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  663 in group HL_37824.7 with cutoff score    60.2904 does better against group HL_13963.3 cutoff score    68.9541; CGGGAG
Sequence  665 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  665 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  665 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  665 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  666 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  666 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  667 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  667 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  667 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  667 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  672 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  672 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  672 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  672 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  675 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  675 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  675 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  675 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  675 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  677 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  677 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  677 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  677 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  679 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  679 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  679 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  679 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  679 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  681 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  681 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  681 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  681 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  681 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  682 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  682 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  682 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  682 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  684 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  684 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  684 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  684 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  684 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  685 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  685 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  685 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  685 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  686 in group HL_37824.7 with cutoff score    77.4865 does better against group HL_59843.1 cutoff score    99.2828; GGAGAC
Sequence  686 in group HL_37824.7 with cutoff score    77.4865 does better against group HL_65794.5 cutoff score    82.7972; GGAGAC
Sequence  687 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  687 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  687 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  687 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  687 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  688 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  688 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  688 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  688 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  688 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  689 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  689 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  691 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  692 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  692 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  692 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  692 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  692 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  694 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  696 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  696 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  696 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  696 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  697 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  697 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  697 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  697 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  697 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  698 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  698 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  698 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  698 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  701 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  701 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  701 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  701 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  702 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  702 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  703 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  703 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  703 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  703 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  711 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  711 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  711 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  711 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  712 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  713 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  713 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  713 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  713 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  713 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  714 in group HL_37824.7 with cutoff score    69.6302 does better against group HL_59843.1 cutoff score    99.9959; UGAGAA
Sequence  714 in group HL_37824.7 with cutoff score    69.6302 does better against group HL_65794.5 cutoff score    83.8534; UGAGAA
Sequence  715 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  715 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  715 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  715 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  717 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  719 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  719 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  721 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  721 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  721 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  721 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  722 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  722 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  723 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  723 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  723 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  723 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  724 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_13963.3 cutoff score    68.4211; GGUGAC
Sequence  724 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_52953.3 cutoff score    89.9420; GGUGAC
Sequence  725 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  726 in group HL_37824.7 with cutoff score    59.3117 does better against group HL_04783.2 cutoff score    63.1770; CCAAAG
Sequence  726 in group HL_37824.7 with cutoff score    59.3117 does better against group HL_53890.2 cutoff score    63.0039; CCAAAG
Sequence  728 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  728 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  729 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  730 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  731 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  731 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  732 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  732 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  732 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  732 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  733 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  733 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  733 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  733 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  734 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  734 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  734 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  734 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  735 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  736 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  737 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  738 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  738 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  738 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  738 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  739 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  739 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  739 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  739 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  741 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  741 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  741 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  741 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  741 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  745 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  745 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  745 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  745 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  745 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  746 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  746 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  746 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  746 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  746 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  747 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  747 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  747 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  747 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  750 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  751 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  751 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  751 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  751 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  752 in group HL_37824.7 with cutoff score    60.2904 does better against group HL_13963.3 cutoff score    68.9541; CGGGAG
Sequence  754 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  755 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  755 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  755 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  755 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  757 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_04783.2 cutoff score    88.9139; GGUAAC
Sequence  757 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_53890.2 cutoff score    81.7197; GGUAAC
Sequence  757 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_56676.1 cutoff score    87.4949; GGUAAC
Sequence  757 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_93535.1 cutoff score    97.6054; GGUAAC
Sequence  758 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  758 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  758 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  758 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  758 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  759 in group HL_37824.7 with cutoff score    77.4865 does better against group HL_59843.1 cutoff score    99.2828; GGAGAC
Sequence  759 in group HL_37824.7 with cutoff score    77.4865 does better against group HL_65794.5 cutoff score    82.7972; GGAGAC
Sequence  760 in group HL_37824.7 with cutoff score    74.6156 does better against group HL_82710.2 cutoff score    92.5106; CGGAAG
Sequence  761 in group HL_37824.7 with cutoff score    74.6156 does better against group HL_82710.2 cutoff score    92.5106; CGGAAG
Sequence  762 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  762 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  762 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  762 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  763 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  764 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  764 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  764 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  764 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  766 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  766 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  766 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  766 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  766 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  767 in group HL_37824.7 with cutoff score    49.1760 does better against group HL_57875.1 cutoff score    94.0297; CGUAGG
Sequence  767 in group HL_37824.7 with cutoff score    49.1760 does better against group HL_75660.5 cutoff score    73.2480; CGUAGG
Sequence  767 in group HL_37824.7 with cutoff score    49.1760 does better against group HL_93535.1 cutoff score    59.5021; CGUAGG
Sequence  768 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  769 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_13963.3 cutoff score    66.2199; AGUGAU
Sequence  769 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_52953.3 cutoff score    87.8060; AGUGAU
Sequence  769 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_93535.1 cutoff score    56.9539; AGUGAU
Sequence  770 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  770 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  770 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  770 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  771 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  773 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  773 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  773 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  773 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  773 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  774 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  775 in group HL_37824.7 with cutoff score    64.2823 does better against group HL_04783.2 cutoff score    64.4847; CUAACG
Sequence  776 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  776 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  776 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  776 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  777 in group HL_37824.7 with cutoff score    68.2444 does better against group HL_59843.1 cutoff score    82.4151; UGAGAG
Sequence  777 in group HL_37824.7 with cutoff score    68.2444 does better against group HL_65794.5 cutoff score    70.1506; UGAGAG
Sequence  780 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  780 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  780 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  780 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  780 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_04783.2 cutoff score    61.9617; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_38901.2 cutoff score    45.2474; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_49922.4 cutoff score    48.3709; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_50006.2 cutoff score    59.3396; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_52953.3 cutoff score    59.7688; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_53890.2 cutoff score    64.5503; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_57176.2 cutoff score    56.7642; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_75660.5 cutoff score    52.4636; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_82710.2 cutoff score    57.3010; AAAAAU
Sequence  781 in group HL_37824.7 with cutoff score    42.1935 does better against group HL_93535.1 cutoff score    43.2128; AAAAAU
Sequence  783 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  783 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  783 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  783 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  784 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  784 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  784 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  784 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  784 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  786 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  786 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  786 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  786 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  788 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  789 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  789 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  789 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  789 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  790 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  790 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  790 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  790 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  792 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  792 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  792 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  792 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  792 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  794 in group HL_37824.7 with cutoff score    73.0281 does better against group HL_53890.2 cutoff score    90.0192; GGCAAC
Sequence  795 in group HL_37824.7 with cutoff score    32.5267 does better against group HL_04783.2 cutoff score    69.9060; UUAGCG
Sequence  797 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  797 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  797 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  797 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  797 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  798 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  798 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  799 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  799 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  799 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  799 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  800 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_57875.1 cutoff score    46.9155; GGUAAGC
Sequence  800 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_77436.5 cutoff score    34.2720; GGUAAGC
Sequence  800 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_87954.2 cutoff score    60.1924; GGUAAGC
Sequence  802 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  802 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  802 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  802 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  802 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  803 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  803 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  803 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  803 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  804 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  805 in group HL_37824.7 with cutoff score    66.8913 does better against group HL_13963.3 cutoff score    97.8877; CGCGAG
Sequence  807 in group HL_37824.7 with cutoff score    64.2823 does better against group HL_04783.2 cutoff score    64.4847; CUAACG
Sequence  809 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_04783.2 cutoff score    88.9139; GGUAAC
Sequence  809 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_53890.2 cutoff score    81.7197; GGUAAC
Sequence  809 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_56676.1 cutoff score    87.4949; GGUAAC
Sequence  809 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_93535.1 cutoff score    97.6054; GGUAAC
Sequence  810 in group HL_37824.7 with cutoff score    77.4865 does better against group HL_59843.1 cutoff score    99.2828; GGAGAC
Sequence  810 in group HL_37824.7 with cutoff score    77.4865 does better against group HL_65794.5 cutoff score    82.7972; GGAGAC
Sequence  811 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  811 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  811 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  811 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  812 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  812 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  812 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  812 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  812 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  813 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  813 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  813 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  813 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  813 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  814 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  814 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  814 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  814 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  815 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  815 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  816 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  818 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  819 in group HL_37824.7 with cutoff score    74.6156 does better against group HL_82710.2 cutoff score    92.5106; CGGAAG
Sequence  821 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  822 in group HL_37824.7 with cutoff score    68.2444 does better against group HL_59843.1 cutoff score    82.4151; UGAGAG
Sequence  822 in group HL_37824.7 with cutoff score    68.2444 does better against group HL_65794.5 cutoff score    70.1506; UGAGAG
Sequence  823 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  823 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  823 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  823 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  824 in group HL_37824.7 with cutoff score    60.2904 does better against group HL_13963.3 cutoff score    68.9541; CGGGAG
Sequence  825 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  825 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  825 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  825 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  825 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  826 in group HL_37824.7 with cutoff score    51.1888 does better against group HL_13963.3 cutoff score    97.7989; AGCGAU
Sequence  826 in group HL_37824.7 with cutoff score    51.1888 does better against group HL_28791.1 cutoff score    55.8481; AGCGAU
Sequence  826 in group HL_37824.7 with cutoff score    51.1888 does better against group HL_53890.2 cutoff score    56.0972; AGCGAU
Sequence  826 in group HL_37824.7 with cutoff score    51.1888 does better against group HL_65794.5 cutoff score    53.6900; AGCGAU
Sequence  827 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  827 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  827 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  827 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  827 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  828 in group HL_37824.7 has cutoff score    -0.0000; AGCUAACU
Sequence  828 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_04783.2 cutoff score     9.2373; AGCUAACU
Sequence  828 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_10540.1 cutoff score    11.5643; AGCUAACU
Sequence  828 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_85993.1 cutoff score     0.7818; AGCUAACU
Sequence  830 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  831 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_13963.3 cutoff score    68.4211; GGUGAC
Sequence  831 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_52953.3 cutoff score    89.9420; GGUGAC
Sequence  832 in group HL_37824.7 with cutoff score     8.6559 does better against group HL_50006.2 cutoff score    15.0128; CGAUAACG
Sequence  832 in group HL_37824.7 with cutoff score     8.6559 does better against group HL_93535.1 cutoff score    14.5827; CGAUAACG
Sequence  833 in group HL_37824.7 with cutoff score    63.7860 does better against group HL_53890.2 cutoff score    82.2809; UGCAAG
Sequence  837 in group HL_37824.7 with cutoff score    43.5610 does better against group HL_07886.3 cutoff score    64.3115; AGAAAGU
Sequence  837 in group HL_37824.7 with cutoff score    43.5610 does better against group HL_59735.5 cutoff score    63.4934; AGAAAGU
Sequence  837 in group HL_37824.7 with cutoff score    43.5610 does better against group HL_87954.2 cutoff score    97.1350; AGAAAGU
Sequence  838 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  838 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  838 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  838 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  838 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  839 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  839 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  839 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  839 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  840 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_57875.1 cutoff score    46.9155; GGUAAGC
Sequence  840 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_77436.5 cutoff score    34.2720; GGUAAGC
Sequence  840 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_87954.2 cutoff score    60.1924; GGUAAGC
Sequence  841 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  843 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  844 in group HL_37824.7 with cutoff score    65.5140 does better against group HL_53890.2 cutoff score    91.5469; AGCAAU
Sequence  845 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_57875.1 cutoff score    46.9155; GGUAAGC
Sequence  845 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_77436.5 cutoff score    34.2720; GGUAAGC
Sequence  845 in group HL_37824.7 with cutoff score    33.0364 does better against group HL_87954.2 cutoff score    60.1924; GGUAAGC
Sequence  846 in group HL_37824.7 with cutoff score    43.5610 does better against group HL_07886.3 cutoff score    64.3115; AGAAAGU
Sequence  846 in group HL_37824.7 with cutoff score    43.5610 does better against group HL_59735.5 cutoff score    63.4934; AGAAAGU
Sequence  846 in group HL_37824.7 with cutoff score    43.5610 does better against group HL_87954.2 cutoff score    97.1350; AGAAAGU
Sequence  847 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  847 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  847 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  847 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  849 in group HL_37824.7 with cutoff score    63.7860 does better against group HL_53890.2 cutoff score    82.2809; UGCAAG
Sequence  850 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  850 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  851 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  851 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  851 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  851 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  852 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  853 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  853 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  855 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  857 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  857 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  858 in group HL_37824.7 with cutoff score     6.7890 does better against group HL_13963.3 cutoff score    47.2596; CGGCGAG
Sequence  858 in group HL_37824.7 with cutoff score     6.7890 does better against group HL_37369.2 cutoff score   100.0000; CGGCGAG
Sequence  858 in group HL_37824.7 with cutoff score     6.7890 does better against group HL_65794.5 cutoff score    19.6648; CGGCGAG
Sequence  858 in group HL_37824.7 with cutoff score     6.7890 does better against group HL_85993.1 cutoff score    23.3576; CGGCGAG
Sequence  859 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  859 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  859 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  859 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  860 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_04783.2 cutoff score    88.9139; GGUAAC
Sequence  860 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_53890.2 cutoff score    81.7197; GGUAAC
Sequence  860 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_56676.1 cutoff score    87.4949; GGUAAC
Sequence  860 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_93535.1 cutoff score    97.6054; GGUAAC
Sequence  861 in group HL_37824.7 with cutoff score    73.0281 does better against group HL_53890.2 cutoff score    90.0192; GGCAAC
Sequence  862 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  863 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  864 in group HL_37824.7 with cutoff score    66.8913 does better against group HL_13963.3 cutoff score    97.8877; CGCGAG
Sequence  865 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  865 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  866 in group HL_37824.7 with cutoff score    10.1578 does better against group HL_65794.5 cutoff score    10.5345; UGACGG
Sequence  866 in group HL_37824.7 with cutoff score    10.1578 does better against group HL_93535.1 cutoff score    24.1571; UGACGG
Sequence  866 in group HL_37824.7 with cutoff score    10.1578 does better against group HL_99040.1 cutoff score    27.8794; UGACGG
Sequence  867 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  867 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  867 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  867 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  867 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  869 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  869 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  869 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  869 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  870 in group HL_37824.7 with cutoff score    28.5544 does better against group HL_04783.2 cutoff score    29.6283; CGGAACG
Sequence  871 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  871 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  871 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  871 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  872 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  874 in group HL_37824.7 with cutoff score    51.5916 does better against group HL_13963.3 cutoff score    66.0843; UGUGAA
Sequence  874 in group HL_37824.7 with cutoff score    51.5916 does better against group HL_52953.3 cutoff score    87.8210; UGUGAA
Sequence  874 in group HL_37824.7 with cutoff score    51.5916 does better against group HL_93535.1 cutoff score    58.1715; UGUGAA
Sequence  875 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  876 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  876 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  876 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  876 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  876 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  877 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_13963.3 cutoff score    66.2199; AGUGAU
Sequence  877 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_52953.3 cutoff score    87.8060; AGUGAU
Sequence  877 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_93535.1 cutoff score    56.9539; AGUGAU
Sequence  879 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_13963.3 cutoff score    66.2199; AGUGAU
Sequence  879 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_52953.3 cutoff score    87.8060; AGUGAU
Sequence  879 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_93535.1 cutoff score    56.9539; AGUGAU
Sequence  880 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  881 in group HL_37824.7 with cutoff score    66.8913 does better against group HL_13963.3 cutoff score    97.8877; CGCGAG
Sequence  883 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_13963.3 cutoff score    66.2199; AGUGAU
Sequence  883 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_52953.3 cutoff score    87.8060; AGUGAU
Sequence  883 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_93535.1 cutoff score    56.9539; AGUGAU
Sequence  885 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  889 in group HL_37824.7 with cutoff score    58.7029 does better against group HL_13963.3 cutoff score   100.0000; GGCGAC
Sequence  891 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  892 in group HL_37824.7 with cutoff score    66.8913 does better against group HL_13963.3 cutoff score    97.8877; CGCGAG
Sequence  895 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_04783.2 cutoff score    87.5190; UGAAAG
Sequence  895 in group HL_37824.7 with cutoff score    82.5696 does better against group HL_53890.2 cutoff score    86.8632; UGAAAG
Sequence  897 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  897 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  897 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  897 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  899 in group HL_37824.7 has cutoff score    -0.0000; UGAUAAGG
Sequence  899 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20743.5 cutoff score    30.7538; UGAUAAGG
Sequence  899 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_87954.2 cutoff score     2.9203; UGAUAAGG
Sequence  899 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_93324.4 cutoff score     6.6584; UGAUAAGG
Sequence  899 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_93535.1 cutoff score     0.0624; UGAUAAGG
Sequence  901 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  902 in group HL_37824.7 with cutoff score    47.8421 does better against group HL_04783.2 cutoff score    50.2733; GGAAAUC
Sequence  902 in group HL_37824.7 with cutoff score    47.8421 does better against group HL_39243.1 cutoff score    56.8567; GGAAAUC
Sequence  902 in group HL_37824.7 with cutoff score    47.8421 does better against group HL_53890.2 cutoff score    53.9526; GGAAAUC
Sequence  902 in group HL_37824.7 with cutoff score    47.8421 does better against group HL_57176.2 cutoff score    65.9327; GGAAAUC
Sequence  902 in group HL_37824.7 with cutoff score    47.8421 does better against group HL_59735.5 cutoff score    95.2551; GGAAAUC
Sequence  902 in group HL_37824.7 with cutoff score    47.8421 does better against group HL_87954.2 cutoff score    86.3943; GGAAAUC
Sequence  903 in group HL_37824.7 with cutoff score    66.8913 does better against group HL_13963.3 cutoff score    97.8877; CGCGAG
Sequence  904 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_13963.3 cutoff score    68.4211; GGUGAC
Sequence  904 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_52953.3 cutoff score    89.9420; GGUGAC
Sequence  905 in group HL_37824.7 with cutoff score    58.7029 does better against group HL_13963.3 cutoff score   100.0000; GGCGAC
Sequence  906 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  907 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  907 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  907 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  907 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  907 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  908 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  910 in group HL_37824.7 with cutoff score    58.7029 does better against group HL_13963.3 cutoff score   100.0000; GGCGAC
Sequence  911 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_13963.3 cutoff score    68.4211; GGUGAC
Sequence  911 in group HL_37824.7 with cutoff score    59.4478 does better against group HL_52953.3 cutoff score    89.9420; GGUGAC
Sequence  912 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  913 in group HL_37824.7 with cutoff score    74.6156 does better against group HL_82710.2 cutoff score    92.5106; CGGAAG
Sequence  914 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_53890.2 cutoff score    44.7629; CGUAUAG
Sequence  914 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_62934.1 cutoff score    49.3218; CGUAUAG
Sequence  914 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_66103.1 cutoff score    63.0439; CGUAUAG
Sequence  914 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_80922.2 cutoff score    58.6510; CGUAUAG
Sequence  915 in group HL_37824.7 with cutoff score    38.2507 does better against group HL_20811.4 cutoff score    63.9915; CUGAAG
Sequence  915 in group HL_37824.7 with cutoff score    38.2507 does better against group HL_46501.1 cutoff score    92.7037; CUGAAG
Sequence  915 in group HL_37824.7 with cutoff score    38.2507 does better against group HL_56334.1 cutoff score    44.6119; CUGAAG
Sequence  915 in group HL_37824.7 with cutoff score    38.2507 does better against group HL_75660.5 cutoff score    40.7413; CUGAAG
Sequence  915 in group HL_37824.7 with cutoff score    38.2507 does better against group HL_82710.2 cutoff score    40.4484; CUGAAG
Sequence  915 in group HL_37824.7 with cutoff score    38.2507 does better against group HL_89199.2 cutoff score    50.0000; CUGAAG
Sequence  916 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_53890.2 cutoff score    44.7629; CGUAUAG
Sequence  916 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_62934.1 cutoff score    49.3218; CGUAUAG
Sequence  916 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_66103.1 cutoff score    63.0439; CGUAUAG
Sequence  916 in group HL_37824.7 with cutoff score    39.5112 does better against group HL_80922.2 cutoff score    58.6510; CGUAUAG
Sequence  918 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_13963.3 cutoff score    66.2199; AGUGAU
Sequence  918 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_52953.3 cutoff score    87.8060; AGUGAU
Sequence  918 in group HL_37824.7 with cutoff score    51.9337 does better against group HL_93535.1 cutoff score    56.9539; AGUGAU
Sequence  919 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  920 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence  920 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence  920 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence  920 in group HL_37824.7 with cutoff score    91.8116 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence  921 in group HL_37824.7 with cutoff score    51.5916 does better against group HL_13963.3 cutoff score    66.0843; UGUGAA
Sequence  921 in group HL_37824.7 with cutoff score    51.5916 does better against group HL_52953.3 cutoff score    87.8210; UGUGAA
Sequence  921 in group HL_37824.7 with cutoff score    51.5916 does better against group HL_93535.1 cutoff score    58.1715; UGUGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_04783.2 cutoff score    35.0125; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_07886.3 cutoff score    43.1800; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_50006.2 cutoff score    43.3832; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_53890.2 cutoff score    46.5155; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_57176.2 cutoff score    58.2523; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_59843.1 cutoff score    49.5563; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_66103.1 cutoff score    30.1305; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_80922.2 cutoff score    63.3536; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_93535.1 cutoff score    40.6194; UGAAGAA
Sequence  923 in group HL_37824.7 with cutoff score    26.2206 does better against group HL_97917.2 cutoff score    61.4972; UGAAGAA
Sequence  924 in group HL_37824.7 with cutoff score    67.6361 does better against group HL_52953.3 cutoff score    90.3823; CGUGAG
Sequence  925 in group HL_37824.7 with cutoff score    66.8913 does better against group HL_13963.3 cutoff score    97.8877; CGCGAG
Sequence  926 in group HL_37824.7 with cutoff score    37.0250 does better against group HL_62934.1 cutoff score    60.8862; CGCACAG
Sequence  926 in group HL_37824.7 with cutoff score    37.0250 does better against group HL_66103.1 cutoff score    56.8567; CGCACAG
Sequence  926 in group HL_37824.7 with cutoff score    37.0250 does better against group HL_89567.2 cutoff score    57.6668; CGCACAG
Sequence  927 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  928 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  928 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  928 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  928 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  929 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence  929 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence  929 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence  929 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence  929 in group HL_37824.7 with cutoff score    83.9554 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence  930 in group HL_37824.7 with cutoff score    65.9168 does better against group HL_04783.2 cutoff score    87.9804; UGUAAA
Sequence  930 in group HL_37824.7 with cutoff score    65.9168 does better against group HL_50006.2 cutoff score    66.0851; UGUAAA
Sequence  930 in group HL_37824.7 with cutoff score    65.9168 does better against group HL_53890.2 cutoff score    82.0242; UGUAAA
Sequence  930 in group HL_37824.7 with cutoff score    65.9168 does better against group HL_56676.1 cutoff score    89.3892; UGUAAA
Sequence  930 in group HL_37824.7 with cutoff score    65.9168 does better against group HL_93535.1 cutoff score    98.6693; UGUAAA
Sequence  931 in group HL_37824.7 with cutoff score    22.7218 does better against group HL_53890.2 cutoff score    34.9511; UGCAUAA
Sequence  931 in group HL_37824.7 with cutoff score    22.7218 does better against group HL_62934.1 cutoff score    91.1307; UGCAUAA
Sequence  931 in group HL_37824.7 with cutoff score    22.7218 does better against group HL_66103.1 cutoff score    98.6655; UGCAUAA
Sequence  931 in group HL_37824.7 with cutoff score    22.7218 does better against group HL_80922.2 cutoff score    57.9765; UGCAUAA
Sequence  931 in group HL_37824.7 with cutoff score    22.7218 does better against group HL_86769.4 cutoff score    36.9848; UGCAUAA
Sequence  932 in group HL_37824.7 with cutoff score    38.7663 does better against group HL_53890.2 cutoff score    39.3857; CGCAUAG
Sequence  932 in group HL_37824.7 with cutoff score    38.7663 does better against group HL_62934.1 cutoff score    92.4651; CGCAUAG
Sequence  932 in group HL_37824.7 with cutoff score    38.7663 does better against group HL_66103.1 cutoff score   100.0000; CGCAUAG
Sequence  932 in group HL_37824.7 with cutoff score    38.7663 does better against group HL_80922.2 cutoff score    58.6510; CGCAUAG
Sequence  933 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_04783.2 cutoff score    88.9139; GGUAAC
Sequence  933 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_53890.2 cutoff score    81.7197; GGUAAC
Sequence  933 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_56676.1 cutoff score    87.4949; GGUAAC
Sequence  933 in group HL_37824.7 with cutoff score    73.7730 does better against group HL_93535.1 cutoff score    97.6054; GGUAAC
Sequence  934 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  936 in group HL_37824.7 with cutoff score    49.3615 does better against group HL_30068.2 cutoff score    69.4514; GGAAUAC
Sequence  936 in group HL_37824.7 with cutoff score    49.3615 does better against group HL_50006.2 cutoff score    55.6179; GGAAUAC
Sequence  936 in group HL_37824.7 with cutoff score    49.3615 does better against group HL_66103.1 cutoff score    61.7983; GGAAUAC
Sequence  936 in group HL_37824.7 with cutoff score    49.3615 does better against group HL_80922.2 cutoff score    95.6486; GGAAUAC
Sequence  939 in group HL_37824.7 with cutoff score    85.6748 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence  940 in group HL_37824.7 with cutoff score    73.0281 does better against group HL_53890.2 cutoff score    90.0192; GGCAAC
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_04783.2 cutoff score    42.6529; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_31585.4 cutoff score    29.6726; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_50006.2 cutoff score    43.3019; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_51447.1 cutoff score    28.4397; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_53890.2 cutoff score    23.1785; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_59843.1 cutoff score    48.7788; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_80922.2 cutoff score    32.4169; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_82710.2 cutoff score    21.8427; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_87954.2 cutoff score    30.8630; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_93535.1 cutoff score    39.4018; AGAGAAU
Sequence  941 in group HL_37824.7 with cutoff score    17.5622 does better against group HL_97917.2 cutoff score    60.3812; AGAGAAU
Sequence  942 in group HL_37824.7 with cutoff score    50.2057 does better against group HL_52953.3 cutoff score    66.0472; UGUGAG
Sequence  942 in group HL_37824.7 with cutoff score    50.2057 does better against group HL_93535.1 cutoff score    50.3590; UGUGAG
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_04783.2 cutoff score    28.0547; GAAGCU
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_53890.2 cutoff score    33.4881; GAAGCU
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_57176.2 cutoff score    18.7371; GAAGCU
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_59843.1 cutoff score    11.4101; GAAGCU
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_62934.1 cutoff score    32.8952; GAAGCU
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_89893.1 cutoff score    29.7836; GAAGCU
Sequence  943 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_93535.1 cutoff score    40.6841; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_04783.2 cutoff score    28.0547; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_53890.2 cutoff score    33.4881; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_57176.2 cutoff score    18.7371; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_59843.1 cutoff score    11.4101; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_62934.1 cutoff score    32.8952; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_89893.1 cutoff score    29.7836; GAAGCU
Sequence  944 in group HL_37824.7 with cutoff score     9.7256 does better against group HL_93535.1 cutoff score    40.6841; GAAGCU
Sequence  945 in group HL_37824.7 has cutoff score    -0.0000; UGCUAACG
Sequence  946 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_04783.2 cutoff score    89.9420; CGUAAG
Sequence  946 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_53890.2 cutoff score    86.4588; CGUAAG
Sequence  946 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_56676.1 cutoff score    88.7625; CGUAAG
Sequence  946 in group HL_37824.7 with cutoff score    81.9613 does better against group HL_93535.1 cutoff score   100.0000; CGUAAG
Sequence  948 in group HL_37824.7 with cutoff score    39.7640 does better against group HL_04783.2 cutoff score    66.5915; UGAACAA
Sequence  948 in group HL_37824.7 with cutoff score    39.7640 does better against group HL_53890.2 cutoff score    40.3282; UGAACAA
Sequence  948 in group HL_37824.7 with cutoff score    39.7640 does better against group HL_80922.2 cutoff score    51.7893; UGAACAA
Sequence  948 in group HL_37824.7 with cutoff score    39.7640 does better against group HL_89567.2 cutoff score    58.7363; UGAACAA
Sequence  948 in group HL_37824.7 with cutoff score    39.7640 does better against group HL_93535.1 cutoff score    83.7627; UGAACAA
Sequence  949 in group HL_37824.7 with cutoff score    35.0363 does better against group HL_31585.4 cutoff score    36.8365; GGAGUAC
Sequence  949 in group HL_37824.7 with cutoff score    35.0363 does better against group HL_49922.4 cutoff score    37.7161; GGAGUAC
Sequence  949 in group HL_37824.7 with cutoff score    35.0363 does better against group HL_51447.1 cutoff score    63.9904; GGAGUAC
Sequence  949 in group HL_37824.7 with cutoff score    35.0363 does better against group HL_59843.1 cutoff score    60.4075; GGAGUAC
Sequence  949 in group HL_37824.7 with cutoff score    35.0363 does better against group HL_80922.2 cutoff score    64.0697; GGAGUAC
Sequence  949 in group HL_37824.7 with cutoff score    35.0363 does better against group HL_97917.2 cutoff score    44.3863; GGAGUAC
Sequence  950 in group HL_37824.7 with cutoff score    46.8519 does better against group HL_04783.2 cutoff score    52.0037; UUAACG
Sequence  951 in group HL_37824.7 has cutoff score    -0.0000; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_13189.1 cutoff score     5.6787; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_32346.4 cutoff score     2.9017; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_32392.1 cutoff score    91.3492; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_34617.5 cutoff score   100.0000; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_35941.1 cutoff score    29.5907; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_37344.1 cutoff score     3.5033; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_43517.1 cutoff score    49.5604; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_46501.1 cutoff score    11.6639; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_48417.5 cutoff score    11.7617; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_48778.2 cutoff score     3.1275; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_50006.2 cutoff score   100.0000; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_53890.2 cutoff score    63.5906; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_55195.3 cutoff score    25.0181; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_56131.2 cutoff score     7.9656; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_56676.1 cutoff score   100.0000; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_57875.1 cutoff score     2.3660; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_66103.1 cutoff score    39.9153; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_70782.2 cutoff score     5.1816; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_71391.1 cutoff score    46.1020; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_81100.2 cutoff score    34.7298; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_87954.2 cutoff score    14.3683; CUUCGG
Sequence  951 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_99040.1 cutoff score    45.7261; CUUCGG
Sequence  952 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_55195.3 cutoff score    34.2737; GGGAGC
Sequence  952 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_57875.1 cutoff score    46.1025; GGGAGC
Sequence  952 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_75660.5 cutoff score    35.0682; GGGAGC
Sequence  952 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_82710.2 cutoff score    42.5607; GGGAGC
Sequence  953 in group HL_37824.7 with cutoff score    32.1734 does better against group HL_13963.3 cutoff score    41.0724; CGACGAG
Sequence  953 in group HL_37824.7 with cutoff score    32.1734 does better against group HL_37369.2 cutoff score    56.8847; CGACGAG
Sequence  953 in group HL_37824.7 with cutoff score    32.1734 does better against group HL_57176.2 cutoff score    57.2850; CGACGAG
Sequence  953 in group HL_37824.7 with cutoff score    32.1734 does better against group HL_59843.1 cutoff score    37.9961; CGACGAG
Sequence  953 in group HL_37824.7 with cutoff score    32.1734 does better against group HL_97917.2 cutoff score    44.5007; CGACGAG
Sequence  956 in group HL_37824.7 with cutoff score     2.5697 does better against group HL_04783.2 cutoff score     5.6348; UCACCG
Sequence  956 in group HL_37824.7 with cutoff score     2.5697 does better against group HL_53890.2 cutoff score    34.2813; UCACCG
Sequence  956 in group HL_37824.7 with cutoff score     2.5697 does better against group HL_62934.1 cutoff score    44.5166; UCACCG
Sequence  956 in group HL_37824.7 with cutoff score     2.5697 does better against group HL_70782.2 cutoff score    10.6124; UCACCG
Sequence  956 in group HL_37824.7 with cutoff score     2.5697 does better against group HL_93535.1 cutoff score     9.0510; UCACCG
Sequence  957 in group HL_37824.7 with cutoff score    55.8085 does better against group HL_04783.2 cutoff score    68.5531; CGAACAG
Sequence  957 in group HL_37824.7 with cutoff score    55.8085 does better against group HL_89567.2 cutoff score    61.2665; CGAACAG
Sequence  957 in group HL_37824.7 with cutoff score    55.8085 does better against group HL_93535.1 cutoff score    85.0934; CGAACAG
Sequence  958 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_55195.3 cutoff score    34.2737; GGGAGC
Sequence  958 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_57875.1 cutoff score    46.1025; GGGAGC
Sequence  958 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_75660.5 cutoff score    35.0682; GGGAGC
Sequence  958 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_82710.2 cutoff score    42.5607; GGGAGC
Sequence  959 in group HL_37824.7 has cutoff score    -0.0000; UCAGAAG
Sequence  959 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_10453.3 cutoff score    18.6132; UCAGAAG
Sequence  959 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_10540.1 cutoff score     0.4522; UCAGAAG
Sequence  959 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_31585.4 cutoff score    54.8251; UCAGAAG
Sequence  959 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_50537.6 cutoff score    11.7114; UCAGAAG
Sequence  959 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_97917.2 cutoff score    16.5640; UCAGAAG
Sequence  959 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_99748.1 cutoff score     5.4870; UCAGAAG
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_10453.3 cutoff score     9.2885; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_13529.1 cutoff score    23.3265; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_15574.1 cutoff score    14.7681; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_39243.1 cutoff score     8.3363; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_53890.2 cutoff score     7.5579; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_57176.2 cutoff score    40.6917; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_82710.2 cutoff score    11.5831; GCAACUC
Sequence  960 in group HL_37824.7 with cutoff score     7.4686 does better against group HL_99748.1 cutoff score     7.6912; GCAACUC
Sequence  961 in group HL_37824.7 has cutoff score    -0.0000; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_04783.2 cutoff score     7.6891; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20811.4 cutoff score     9.3613; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_38901.2 cutoff score    24.2890; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_47787.2 cutoff score    22.8801; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_53890.2 cutoff score    21.6931; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_56131.2 cutoff score    10.0853; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_56334.1 cutoff score    13.4607; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_62934.1 cutoff score    51.4796; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_70782.2 cutoff score     8.7234; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_78347.4 cutoff score     6.3872; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_89893.1 cutoff score    23.5416; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_93535.1 cutoff score    98.2935; CAGCCG
Sequence  961 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_99040.1 cutoff score     9.6658; CAGCCG
Sequence  962 in group HL_37824.7 with cutoff score    66.4273 does better against group HL_56334.1 cutoff score    67.0898; GGGAAC
Sequence  962 in group HL_37824.7 with cutoff score    66.4273 does better against group HL_71391.1 cutoff score    89.7655; GGGAAC
Sequence  962 in group HL_37824.7 with cutoff score    66.4273 does better against group HL_82710.2 cutoff score    94.6229; GGGAAC
Sequence  962 in group HL_37824.7 with cutoff score    66.4273 does better against group HL_93535.1 cutoff score    71.4035; GGGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_20811.4 cutoff score    58.9187; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_38901.2 cutoff score    33.5368; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_46501.1 cutoff score    91.4581; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_55195.3 cutoff score    32.0494; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_56131.2 cutoff score    32.2177; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_56334.1 cutoff score    43.2044; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_57875.1 cutoff score    35.3483; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_71391.1 cutoff score    58.1866; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_75660.5 cutoff score    39.2936; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_82710.2 cutoff score    42.5607; GUGAAC
Sequence  963 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_89199.2 cutoff score    47.7827; GUGAAC
Sequence  964 in group HL_37824.7 with cutoff score    74.6156 does better against group HL_82710.2 cutoff score    92.5106; CGGAAG
Sequence  965 in group HL_37824.7 with cutoff score    74.6156 does better against group HL_82710.2 cutoff score    92.5106; CGGAAG
Sequence  966 in group HL_37824.7 with cutoff score    56.0305 does better against group HL_53890.2 cutoff score    58.6917; CGAAAUG
Sequence  966 in group HL_37824.7 with cutoff score    56.0305 does better against group HL_57176.2 cutoff score    61.9572; CGAAAUG
Sequence  966 in group HL_37824.7 with cutoff score    56.0305 does better against group HL_59735.5 cutoff score    96.5227; CGAAAUG
Sequence  966 in group HL_37824.7 with cutoff score    56.0305 does better against group HL_87954.2 cutoff score    85.7704; CGAAAUG
Sequence  967 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_55195.3 cutoff score    34.2737; GGGAGC
Sequence  967 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_57875.1 cutoff score    46.1025; GGGAGC
Sequence  967 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_75660.5 cutoff score    35.0682; GGGAGC
Sequence  967 in group HL_37824.7 with cutoff score    33.6419 does better against group HL_82710.2 cutoff score    42.5607; GGGAGC
Sequence  969 in group HL_37824.7 has cutoff score    -0.0000; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_04783.2 cutoff score     7.6891; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20811.4 cutoff score     9.3613; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_38901.2 cutoff score    24.2890; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_47787.2 cutoff score    22.8801; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_53890.2 cutoff score    21.6931; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_56131.2 cutoff score    10.0853; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_56334.1 cutoff score    13.4607; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_62934.1 cutoff score    51.4796; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_70782.2 cutoff score     8.7234; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_78347.4 cutoff score     6.3872; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_89893.1 cutoff score    23.5416; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_93535.1 cutoff score    98.2935; CAGCCG
Sequence  969 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_99040.1 cutoff score     9.6658; CAGCCG
Sequence  970 in group HL_37824.7 with cutoff score    40.1194 does better against group HL_30068.2 cutoff score    54.8354; UGAAUAG
Sequence  970 in group HL_37824.7 with cutoff score    40.1194 does better against group HL_66103.1 cutoff score    40.4695; UGAAUAG
Sequence  970 in group HL_37824.7 with cutoff score    40.1194 does better against group HL_80922.2 cutoff score    72.8625; UGAAUAG
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_20811.4 cutoff score    58.9187; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_38901.2 cutoff score    33.5368; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_46501.1 cutoff score    91.4581; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_55195.3 cutoff score    32.0494; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_56131.2 cutoff score    32.2177; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_56334.1 cutoff score    43.2044; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_57875.1 cutoff score    35.3483; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_71391.1 cutoff score    58.1866; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_75660.5 cutoff score    39.2936; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_82710.2 cutoff score    42.5607; GUGAAC
Sequence  971 in group HL_37824.7 with cutoff score    30.0624 does better against group HL_89199.2 cutoff score    47.7827; GUGAAC
Sequence  972 in group HL_37824.7 with cutoff score    27.4211 does better against group HL_53890.2 cutoff score    42.4024; UUCAAG
Sequence  973 in group HL_37824.7 with cutoff score    22.9616 does better against group HL_42046.2 cutoff score    23.7721; UGAUGAG
Sequence  973 in group HL_37824.7 with cutoff score    22.9616 does better against group HL_93535.1 cutoff score    35.4523; UGAUGAG
Sequence  973 in group HL_37824.7 with cutoff score    22.9616 does better against group HL_97917.2 cutoff score    42.7658; UGAUGAG
Sequence  974 in group HL_37824.7 with cutoff score     2.0132 does better against group HL_04783.2 cutoff score    22.5490; UUAACAG
Sequence  974 in group HL_37824.7 with cutoff score     2.0132 does better against group HL_13529.1 cutoff score    64.2767; UUAACAG
Sequence  974 in group HL_37824.7 with cutoff score     2.0132 does better against group HL_15574.1 cutoff score    25.4892; UUAACAG
Sequence  974 in group HL_37824.7 with cutoff score     2.0132 does better against group HL_22584.6 cutoff score    12.9836; UUAACAG
Sequence  974 in group HL_37824.7 with cutoff score     2.0132 does better against group HL_53890.2 cutoff score    23.9859; UUAACAG
Sequence  974 in group HL_37824.7 with cutoff score     2.0132 does better against group HL_93535.1 cutoff score    23.8880; UUAACAG
Sequence  975 in group HL_37824.7 with cutoff score    60.3736 does better against group HL_65794.5 cutoff score    62.3704; CGACAG
Sequence  975 in group HL_37824.7 with cutoff score    60.3736 does better against group HL_93535.1 cutoff score    73.7982; CGACAG
Sequence  976 in group HL_37824.7 has cutoff score    -0.0000; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_13529.1 cutoff score    23.3265; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20167.2 cutoff score     6.6165; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20535.2 cutoff score    15.4220; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_29966.1 cutoff score     5.5778; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_39243.1 cutoff score    19.9007; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_50537.6 cutoff score     1.7950; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_53890.2 cutoff score     7.5579; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_59735.5 cutoff score     3.5914; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_69752.2 cutoff score    58.4161; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_77436.5 cutoff score    18.0620; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_86883.1 cutoff score     7.7019; GUAAUUC
Sequence  976 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_87954.2 cutoff score    14.9397; GUAAUUC
Sequence  977 in group HL_37824.7 with cutoff score     8.2562 does better against group HL_07886.3 cutoff score    29.3367; UAAGGG
Sequence  977 in group HL_37824.7 with cutoff score     8.2562 does better against group HL_52953.3 cutoff score    27.9520; UAAGGG
Sequence  977 in group HL_37824.7 with cutoff score     8.2562 does better against group HL_57176.2 cutoff score    25.3862; UAAGGG
Sequence  977 in group HL_37824.7 with cutoff score     8.2562 does better against group HL_93535.1 cutoff score    81.9379; UAAGGG
Sequence  978 in group HL_37824.7 with cutoff score    24.3999 does better against group HL_55195.3 cutoff score    49.7410; UGGAGG
Sequence  978 in group HL_37824.7 with cutoff score    24.3999 does better against group HL_57875.1 cutoff score    38.8051; UGGAGG
Sequence  978 in group HL_37824.7 with cutoff score    24.3999 does better against group HL_99040.1 cutoff score    27.8794; UGGAGG
Sequence  979 in group HL_37824.7 with cutoff score    42.5311 does better against group HL_53890.2 cutoff score    61.5744; CGAACG
Sequence  979 in group HL_37824.7 with cutoff score    42.5311 does better against group HL_82710.2 cutoff score    45.8255; CGAACG
Sequence  979 in group HL_37824.7 with cutoff score    42.5311 does better against group HL_93535.1 cutoff score    73.7982; CGAACG
Sequence  980 in group HL_37824.7 with cutoff score    38.3781 does better against group HL_04783.2 cutoff score    56.0721; UGAACAG
Sequence  980 in group HL_37824.7 with cutoff score    38.3781 does better against group HL_89567.2 cutoff score    42.5517; UGAACAG
Sequence  980 in group HL_37824.7 with cutoff score    38.3781 does better against group HL_93535.1 cutoff score    75.9502; UGAACAG
Sequence  981 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence  981 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_50006.2 cutoff score    89.5602; AGAAAU
Sequence  981 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence  981 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_53890.2 cutoff score    96.1292; AGAAAU
Sequence  981 in group HL_37824.7 with cutoff score    84.2975 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence  982 in group HL_37824.7 with cutoff score    39.6724 does better against group HL_28791.1 cutoff score    55.9837; UGCAUA
Sequence  982 in group HL_37824.7 with cutoff score    39.6724 does better against group HL_48417.5 cutoff score    40.1817; UGCAUA
Sequence  982 in group HL_37824.7 with cutoff score    39.6724 does better against group HL_53890.2 cutoff score    62.6155; UGCAUA
Sequence  982 in group HL_37824.7 with cutoff score    39.6724 does better against group HL_80709.3 cutoff score    52.4792; UGCAUA
Sequence  982 in group HL_37824.7 with cutoff score    39.6724 does better against group HL_81100.2 cutoff score    41.8915; UGCAUA
Sequence  983 in group HL_37824.7 has cutoff score    -0.0000; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_13529.1 cutoff score    23.3265; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20167.2 cutoff score     6.6165; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_20535.2 cutoff score    15.4220; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_29966.1 cutoff score     5.5778; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_39243.1 cutoff score    19.9007; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_50537.6 cutoff score     1.7950; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_53890.2 cutoff score     7.5579; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_59735.5 cutoff score     3.5914; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_69752.2 cutoff score    58.4161; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_77436.5 cutoff score    18.0620; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_86883.1 cutoff score     7.7019; GUAAUUC
Sequence  983 in group HL_37824.7 with cutoff score    -0.0000 does better against group HL_87954.2 cutoff score    14.9397; GUAAUUC
Sequence  984 in group HL_37824.7 with cutoff score    81.2165 does better against group HL_53890.2 cutoff score    94.7583; CGCAAG
Sequence  985 in group HL_37824.7 with cutoff score    15.3574 does better against group HL_13529.1 cutoff score    70.8783; GUAACGC
Sequence  985 in group HL_37824.7 with cutoff score    15.3574 does better against group HL_15574.1 cutoff score    37.6141; GUAACGC
Sequence  985 in group HL_37824.7 with cutoff score    15.3574 does better against group HL_50006.2 cutoff score    16.1747; GUAACGC
Sequence  985 in group HL_37824.7 with cutoff score    15.3574 does better against group HL_87553.1 cutoff score    33.3213; GUAACGC
Sequence  988 in group HL_38168.1 with cutoff score    68.6099 does better against group HL_30068.2 cutoff score    97.7688; CUGUUCG
Sequence  988 in group HL_38168.1 with cutoff score    68.6099 does better against group HL_67667.2 cutoff score   100.0000; CUGUUCG
Sequence  992 in group HL_38649.1 with cutoff score    69.4115 does better against group HL_41543.1 cutoff score    99.2115; GUGCAGCCCGUC
Sequence  996 in group HL_38808.1 with cutoff score    79.3434 does better against group HL_18565.1 cutoff score    96.8021; ACUGCAGAU
Sequence 1002 in group HL_38901.2 with cutoff score    81.4378 does better against group HL_26631.1 cutoff score    98.7544; GAGUC
Sequence 1002 in group HL_38901.2 with cutoff score    81.4378 does better against group HL_75660.5 cutoff score    87.5132; GAGUC
Sequence 1003 in group HL_38901.2 with cutoff score    79.3023 does better against group HL_48417.5 cutoff score   100.0000; CAUUUG
Sequence 1003 in group HL_38901.2 with cutoff score    79.3023 does better against group HL_75660.5 cutoff score    79.4528; CAUUUG
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_37824.7 cutoff score    91.8116; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_50006.2 cutoff score    90.3119; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_65794.5 cutoff score    77.4201; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_75660.5 cutoff score    82.8395; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence 1004 in group HL_38901.2 with cutoff score    73.5660 does better against group HL_93535.1 cutoff score    74.9453; GGAAAC
Sequence 1005 in group HL_39243.1 with cutoff score    80.0303 does better against group HL_86012.1 cutoff score   100.0000; GUUCGAUCC
Sequence 1014 in group HL_41464.2 with cutoff score    53.1029 does better against group HL_18978.1 cutoff score   100.0000; CUGUUCGCAG
Sequence 1032 in group HL_43517.1 with cutoff score    85.4074 does better against group HL_25967.2 cutoff score   100.0000; GUUUAUC
Sequence 1034 in group HL_45175.1 with cutoff score    95.3587 does better against group HL_20811.4 cutoff score    97.6268; CAGUUGGUAG
Sequence 1035 in group HL_45175.1 with cutoff score    89.2561 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence 1035 in group HL_45175.1 with cutoff score    89.2561 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence 1035 in group HL_45175.1 with cutoff score    89.2561 does better against group HL_66853.7 cutoff score    93.8442; CAGUCGGUAG
Sequence 1053 in group HL_47787.2 with cutoff score    28.8362 does better against group HL_28075.1 cutoff score    46.8564; CAUUUUGG
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_04783.2 cutoff score    98.0384; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_37824.7 cutoff score    83.9554; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_38901.2 cutoff score    71.9745; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_50006.2 cutoff score    89.6415; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_52953.3 cutoff score    97.8790; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_53890.2 cutoff score    94.9060; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_56676.1 cutoff score    40.8688; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_59843.1 cutoff score    68.4170; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_65794.5 cutoff score    78.4763; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_75660.5 cutoff score    79.5504; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_80709.3 cutoff score    71.2685; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_80922.2 cutoff score    32.9287; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_82710.2 cutoff score    97.6633; UGAAAA
Sequence 1054 in group HL_47787.2 with cutoff score    32.3020 does better against group HL_93535.1 cutoff score    76.0093; UGAAAA
Sequence 1060 in group HL_48417.5 with cutoff score    88.6013 does better against group HL_57875.1 cutoff score    94.6229; GAUUAC
Sequence 1061 in group HL_48417.5 with cutoff score    88.6013 does better against group HL_57875.1 cutoff score    94.6229; GAUUAC
Sequence 1064 in group HL_48417.5 with cutoff score    77.9991 does better against group HL_53890.2 cutoff score    89.2826; CAACAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_04642.1 cutoff score    77.5772; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_07480.2 cutoff score    20.0501; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_07951.3 cutoff score    41.4204; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_09260.2 cutoff score    38.8744; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_20811.4 cutoff score    40.1940; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_23115.1 cutoff score    51.5447; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_45175.1 cutoff score    39.7752; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_49941.1 cutoff score    74.5310; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_58224.1 cutoff score    32.0525; CAGUUGGUUAG
Sequence 1065 in group HL_48417.5 with cutoff score    11.0115 does better against group HL_66853.7 cutoff score    61.4878; CAGUUGGUUAG
Sequence 1067 in group HL_48417.5 with cutoff score    78.5442 does better against group HL_81100.2 cutoff score    97.8877; CCUUGG
Sequence 1070 in group HL_48417.5 with cutoff score    31.7749 does better against group HL_89567.2 cutoff score    37.9793; CGACACG
Sequence 1072 in group HL_48417.5 with cutoff score    78.6682 does better against group HL_60914.1 cutoff score   100.0000; CUGGG
Sequence 1073 in group HL_48417.5 with cutoff score    75.3470 does better against group HL_28075.1 cutoff score    77.2843; CUUUUUG
Sequence 1074 in group HL_48417.5 with cutoff score    78.9653 does better against group HL_28791.1 cutoff score   100.0000; CGCGUG
Sequence 1074 in group HL_48417.5 with cutoff score    78.9653 does better against group HL_81100.2 cutoff score   100.0000; CGCGUG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_04642.1 cutoff score    74.3342; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_07951.3 cutoff score    29.5051; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_18978.1 cutoff score    30.8382; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_20811.4 cutoff score    97.6268; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_45175.1 cutoff score    95.3587; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_49941.1 cutoff score    57.3772; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_58224.1 cutoff score    76.5701; CAGUUGGUAG
Sequence 1076 in group HL_48417.5 with cutoff score    19.1929 does better against group HL_66853.7 cutoff score    79.5156; CAGUUGGUAG
Sequence 1081 in group HL_48417.5 with cutoff score    79.2851 does better against group HL_57875.1 cutoff score    83.1759; AAUUAUU
Sequence 1082 in group HL_48778.2 with cutoff score    54.7604 does better against group HL_56131.2 cutoff score    65.3420; CCGUG
Sequence 1084 in group HL_48778.2 with cutoff score    70.9790 does better against group HL_32346.4 cutoff score    84.2345; UUUCA
Sequence 1084 in group HL_48778.2 with cutoff score    70.9790 does better against group HL_43517.1 cutoff score    99.2023; UUUCA
Sequence 1092 in group HL_48778.2 with cutoff score    65.8727 does better against group HL_70782.2 cutoff score    73.8433; GUCAC
Sequence 1092 in group HL_48778.2 with cutoff score    65.8727 does better against group HL_75660.5 cutoff score    74.7254; GUCAC
Sequence 1099 in group HL_48778.2 with cutoff score    99.2980 does better against group HL_94980.1 cutoff score   100.0000; CUUG
Sequence 1102 in group HL_48778.2 with cutoff score    76.5290 does better against group HL_32346.4 cutoff score    91.4846; CAUUG
Sequence 1102 in group HL_48778.2 with cutoff score    76.5290 does better against group HL_56334.1 cutoff score    90.4888; CAUUG
Sequence 1103 in group HL_48778.2 with cutoff score    65.8727 does better against group HL_70782.2 cutoff score    73.8433; GUCAC
Sequence 1103 in group HL_48778.2 with cutoff score    65.8727 does better against group HL_75660.5 cutoff score    74.7254; GUCAC
Sequence 1110 in group HL_48778.2 with cutoff score    59.2413 does better against group HL_43517.1 cutoff score    60.3271; UUUCUA
Sequence 1110 in group HL_48778.2 with cutoff score    59.2413 does better against group HL_56676.1 cutoff score    59.6623; UUUCUA
Sequence 1116 in group HL_48778.2 with cutoff score    87.5602 does better against group HL_32346.4 cutoff score    97.6718; CUUUG
Sequence 1117 in group HL_48778.2 with cutoff score    23.6752 does better against group HL_32392.1 cutoff score    42.8288; CUACGG
Sequence 1117 in group HL_48778.2 with cutoff score    23.6752 does better against group HL_34617.5 cutoff score    85.5271; CUACGG
Sequence 1117 in group HL_48778.2 with cutoff score    23.6752 does better against group HL_50006.2 cutoff score    60.3985; CUACGG
Sequence 1117 in group HL_48778.2 with cutoff score    23.6752 does better against group HL_53890.2 cutoff score    35.5535; CUACGG
Sequence 1117 in group HL_48778.2 with cutoff score    23.6752 does better against group HL_56676.1 cutoff score    51.4796; CUACGG
Sequence 1117 in group HL_48778.2 with cutoff score    23.6752 does better against group HL_99040.1 cutoff score    45.7261; CUACGG
Sequence 1118 in group HL_48778.2 with cutoff score    59.9935 does better against group HL_56334.1 cutoff score    69.2688; UUUUUA
Sequence 1118 in group HL_48778.2 with cutoff score    59.9935 does better against group HL_57875.1 cutoff score    62.2203; UUUUUA
Sequence 1118 in group HL_48778.2 with cutoff score    59.9935 does better against group HL_69752.2 cutoff score    61.7768; UUUUUA
Sequence 1120 in group HL_48778.2 with cutoff score    99.2980 does better against group HL_94980.1 cutoff score   100.0000; CUUG
Sequence 1121 in group HL_48778.2 with cutoff score    99.2980 does better against group HL_94980.1 cutoff score   100.0000; CUUG
Sequence 1122 in group HL_48778.2 with cutoff score    87.5602 does better against group HL_32346.4 cutoff score    97.6718; CUUUG
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_38901.2 cutoff score    30.2768; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_43517.1 cutoff score    44.1833; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_50006.2 cutoff score    45.2391; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_56131.2 cutoff score    35.2909; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_56334.1 cutoff score    54.7688; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_67667.2 cutoff score    37.0720; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_69752.2 cutoff score    26.8769; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_70782.2 cutoff score    88.2479; GUGUCC
Sequence 1124 in group HL_48778.2 with cutoff score    25.1326 does better against group HL_86870.2 cutoff score    33.6184; GUGUCC
Sequence 1125 in group HL_48778.2 with cutoff score    76.5290 does better against group HL_32346.4 cutoff score    91.4846; CAUUG
Sequence 1125 in group HL_48778.2 with cutoff score    76.5290 does better against group HL_56334.1 cutoff score    90.4888; CAUUG
Sequence 1127 in group HL_48778.2 with cutoff score    87.5602 does better against group HL_32346.4 cutoff score    97.6718; CUUUG
Sequence 1134 in group HL_49922.4 with cutoff score    62.2327 does better against group HL_39243.1 cutoff score    98.7541; CAAAAUG
Sequence 1134 in group HL_49922.4 with cutoff score    62.2327 does better against group HL_59735.5 cutoff score    64.9438; CAAAAUG
Sequence 1135 in group HL_49922.4 with cutoff score    62.2327 does better against group HL_39243.1 cutoff score    98.7541; CAAAAUG
Sequence 1135 in group HL_49922.4 with cutoff score    62.2327 does better against group HL_59735.5 cutoff score    64.9438; CAAAAUG
Sequence 1141 in group HL_49941.1 with cutoff score    89.7026 does better against group HL_93616.2 cutoff score   100.0000; CAGCCUGGUAG
Sequence 1144 in group HL_50006.2 with cutoff score    91.8192 does better against group HL_04783.2 cutoff score   100.0000; CGAAAG
Sequence 1144 in group HL_50006.2 with cutoff score    91.8192 does better against group HL_37824.7 cutoff score   100.0000; CGAAAG
Sequence 1144 in group HL_50006.2 with cutoff score    91.8192 does better against group HL_52953.3 cutoff score   100.0000; CGAAAG
Sequence 1144 in group HL_50006.2 with cutoff score    91.8192 does better against group HL_53890.2 cutoff score    99.3406; CGAAAG
Sequence 1144 in group HL_50006.2 with cutoff score    91.8192 does better against group HL_82710.2 cutoff score    97.8877; CGAAAG
Sequence 1146 in group HL_50006.2 with cutoff score    50.2979 does better against group HL_22622.1 cutoff score    51.2833; GAAGGAUC
Sequence 1154 in group HL_50537.6 with cutoff score    83.6786 does better against group HL_99748.1 cutoff score   100.0000; CCAGUUAG
Sequence 1171 in group HL_52953.3 with cutoff score    78.0487 does better against group HL_49922.4 cutoff score    97.5949; GAGUAC
Sequence 1187 in group HL_53890.2 with cutoff score    96.1292 does better against group HL_04783.2 cutoff score    98.8722; AGAAAU
Sequence 1187 in group HL_53890.2 with cutoff score    96.1292 does better against group HL_52953.3 cutoff score    97.8640; AGAAAU
Sequence 1187 in group HL_53890.2 with cutoff score    96.1292 does better against group HL_82710.2 cutoff score    97.7989; AGAAAU
Sequence 1190 in group HL_53890.2 with cutoff score    83.0954 does better against group HL_62934.1 cutoff score   100.0000; CAACCG
Sequence 1193 in group HL_53890.2 with cutoff score    73.9224 does better against group HL_87954.2 cutoff score    88.4357; UGAAAAG
Sequence 1195 in group HL_53890.2 with cutoff score    79.0556 does better against group HL_65313.1 cutoff score   100.0000; CCUUUG
Sequence 1196 in group HL_53890.2 with cutoff score    73.9813 does better against group HL_04783.2 cutoff score    77.4610; UGUAAG
Sequence 1196 in group HL_53890.2 with cutoff score    73.9813 does better against group HL_56676.1 cutoff score    92.2398; UGUAAG
Sequence 1196 in group HL_53890.2 with cutoff score    73.9813 does better against group HL_93535.1 cutoff score    90.8568; UGUAAG
Sequence 1198 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_32392.1 cutoff score    91.3492; CUUCGG
Sequence 1198 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_34617.5 cutoff score   100.0000; CUUCGG
Sequence 1198 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_50006.2 cutoff score   100.0000; CUUCGG
Sequence 1198 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_56676.1 cutoff score   100.0000; CUUCGG
Sequence 1200 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_32392.1 cutoff score    91.3492; CUUCGG
Sequence 1200 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_34617.5 cutoff score   100.0000; CUUCGG
Sequence 1200 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_50006.2 cutoff score   100.0000; CUUCGG
Sequence 1200 in group HL_53890.2 with cutoff score    63.5906 does better against group HL_56676.1 cutoff score   100.0000; CUUCGG
Sequence 1206 in group HL_55195.3 with cutoff score    63.3143 does better against group HL_04783.2 cutoff score    91.5250; GGUAC
Sequence 1206 in group HL_55195.3 with cutoff score    63.3143 does better against group HL_13189.1 cutoff score    99.2869; GGUAC
Sequence 1206 in group HL_55195.3 with cutoff score    63.3143 does better against group HL_56131.2 cutoff score    70.6038; GGUAC
Sequence 1206 in group HL_55195.3 with cutoff score    63.3143 does better against group HL_78677.1 cutoff score    89.1123; GGUAC
Sequence 1213 in group HL_56131.2 with cutoff score    65.9630 does better against group HL_06059.6 cutoff score    87.3432; GCUGCGAAC
Sequence 1213 in group HL_56131.2 with cutoff score    65.9630 does better against group HL_10453.3 cutoff score    80.0372; GCUGCGAAC
Sequence 1217 in group HL_56131.2 with cutoff score    88.3395 does better against group HL_27483.1 cutoff score   100.0000; GGUC
Sequence 1217 in group HL_56131.2 with cutoff score    88.3395 does better against group HL_32346.4 cutoff score    97.6529; GGUC
Sequence 1220 in group HL_56334.1 with cutoff score    69.3140 does better against group HL_82710.2 cutoff score    92.2862; UGGAAA
Sequence 1220 in group HL_56334.1 with cutoff score    69.3140 does better against group HL_93535.1 cutoff score    72.4675; UGGAAA
Sequence 1221 in group HL_56334.1 with cutoff score    90.4888 does better against group HL_32346.4 cutoff score    91.4846; CAUUG
Sequence 1226 in group HL_56334.1 with cutoff score    69.3140 does better against group HL_82710.2 cutoff score    92.2862; UGGAAA
Sequence 1226 in group HL_56334.1 with cutoff score    69.3140 does better against group HL_93535.1 cutoff score    72.4675; UGGAAA
Sequence 1278 in group HL_61996.2 with cutoff score    61.9313 does better against group HL_28252.8 cutoff score   100.0000; GUUCGAAUC
Sequence 1279 in group HL_62934.1 with cutoff score    92.4651 does better against group HL_66103.1 cutoff score   100.0000; CGCAUAG
Sequence 1291 in group HL_64690.6 with cutoff score    47.3725 does better against group HL_10453.3 cutoff score    53.4136; CCUUUCACG
Sequence 1291 in group HL_64690.6 with cutoff score    47.3725 does better against group HL_50006.2 cutoff score    98.9913; CCUUUCACG
Sequence 1291 in group HL_64690.6 with cutoff score    47.3725 does better against group HL_83632.1 cutoff score    53.6535; CCUUUCACG
Sequence 1292 in group HL_64690.6 with cutoff score    45.1890 does better against group HL_20535.2 cutoff score    50.0465; CCCUUUUGG
Sequence 1296 in group HL_65794.5 with cutoff score    82.3850 does better against group HL_37824.7 cutoff score    85.6748; CGAGAG
Sequence 1296 in group HL_65794.5 with cutoff score    82.3850 does better against group HL_59843.1 cutoff score   100.0000; CGAGAG
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_37824.7 cutoff score    91.8116; GGAAAC
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_50006.2 cutoff score    90.3119; GGAAAC
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_75660.5 cutoff score    82.8395; GGAAAC
Sequence 1299 in group HL_65794.5 with cutoff score    77.4201 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence 1302 in group HL_65794.5 with cutoff score    45.7197 does better against group HL_78347.4 cutoff score    53.6728; UGGUUG
Sequence 1303 in group HL_65794.5 with cutoff score    56.6882 does better against group HL_37369.2 cutoff score    56.8847; CGCCGAG
Sequence 1304 in group HL_65794.5 with cutoff score    51.6559 does better against group HL_30680.3 cutoff score    83.7548; GUCCCGC
Sequence 1305 in group HL_65794.5 with cutoff score    58.6380 does better against group HL_80922.2 cutoff score    67.9138; GCAAUAC
Sequence 1311 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence 1311 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence 1312 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence 1312 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence 1313 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence 1313 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence 1314 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence 1314 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence 1316 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_04642.1 cutoff score    93.9089; CAGUCGGUAG
Sequence 1316 in group HL_66853.7 with cutoff score    93.8442 does better against group HL_58224.1 cutoff score   100.0000; CAGUCGGUAG
Sequence 1319 in group HL_66853.7 with cutoff score    75.8165 does better against group HL_04642.1 cutoff score    80.4253; CAGUCGGUUAG
Sequence 1333 in group HL_67407.5 with cutoff score    81.8520 does better against group HL_50418.1 cutoff score   100.0000; GAAGCAGGCAC
Sequence 1334 in group HL_67407.5 with cutoff score    89.3444 does better against group HL_50418.1 cutoff score   100.0000; GAAGCCUCCAC
Sequence 1353 in group HL_69752.2 with cutoff score    92.7407 does better against group HL_86870.2 cutoff score    99.4250; CUGUUG
Sequence 1354 in group HL_69752.2 with cutoff score    92.7407 does better against group HL_86870.2 cutoff score    99.4250; CUGUUG
Sequence 1363 in group HL_71391.1 with cutoff score    89.7655 does better against group HL_82710.2 cutoff score    94.6229; GGGAAC
Sequence 1411 in group HL_75660.5 with cutoff score    59.8334 does better against group HL_38901.2 cutoff score   100.0000; GUGGUC
Sequence 1411 in group HL_75660.5 with cutoff score    59.8334 does better against group HL_86870.2 cutoff score    63.0439; GUGGUC
Sequence 1413 in group HL_75660.5 with cutoff score    84.2871 does better against group HL_04783.2 cutoff score   100.0000; CGAAAG
Sequence 1413 in group HL_75660.5 with cutoff score    84.2871 does better against group HL_37824.7 cutoff score   100.0000; CGAAAG
Sequence 1413 in group HL_75660.5 with cutoff score    84.2871 does better against group HL_50006.2 cutoff score    91.8192; CGAAAG
Sequence 1413 in group HL_75660.5 with cutoff score    84.2871 does better against group HL_52953.3 cutoff score   100.0000; CGAAAG
Sequence 1413 in group HL_75660.5 with cutoff score    84.2871 does better against group HL_53890.2 cutoff score    99.3406; CGAAAG
Sequence 1413 in group HL_75660.5 with cutoff score    84.2871 does better against group HL_82710.2 cutoff score    97.8877; CGAAAG
Sequence 1417 in group HL_75660.5 with cutoff score    82.8395 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence 1417 in group HL_75660.5 with cutoff score    82.8395 does better against group HL_37824.7 cutoff score    91.8116; GGAAAC
Sequence 1417 in group HL_75660.5 with cutoff score    82.8395 does better against group HL_50006.2 cutoff score    90.3119; GGAAAC
Sequence 1417 in group HL_75660.5 with cutoff score    82.8395 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence 1417 in group HL_75660.5 with cutoff score    82.8395 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence 1417 in group HL_75660.5 with cutoff score    82.8395 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence 1418 in group HL_75660.5 with cutoff score    69.3772 does better against group HL_89199.2 cutoff score   100.0000; CUGAUG
Sequence 1420 in group HL_75660.5 with cutoff score    50.2649 does better against group HL_30068.2 cutoff score    68.6055; CGAAUAG
Sequence 1420 in group HL_75660.5 with cutoff score    50.2649 does better against group HL_37824.7 cutoff score    57.5499; CGAAUAG
Sequence 1420 in group HL_75660.5 with cutoff score    50.2649 does better against group HL_50006.2 cutoff score    57.1252; CGAAUAG
Sequence 1420 in group HL_75660.5 with cutoff score    50.2649 does better against group HL_66103.1 cutoff score    63.0439; CGAAUAG
Sequence 1420 in group HL_75660.5 with cutoff score    50.2649 does better against group HL_80922.2 cutoff score    95.6070; CGAAUAG
Sequence 1421 in group HL_75660.5 with cutoff score    57.2864 does better against group HL_28791.1 cutoff score   100.0000; CGCGUG
Sequence 1421 in group HL_75660.5 with cutoff score    57.2864 does better against group HL_48417.5 cutoff score    78.9653; CGCGUG
Sequence 1421 in group HL_75660.5 with cutoff score    57.2864 does better against group HL_81100.2 cutoff score   100.0000; CGCGUG
Sequence 1422 in group HL_75660.5 with cutoff score    73.2480 does better against group HL_57875.1 cutoff score    94.0297; CGUAGG
Sequence 1423 in group HL_75660.5 with cutoff score    73.2300 does better against group HL_48778.2 cutoff score    86.8080; CUCUG
Sequence 1424 in group HL_75660.5 with cutoff score    87.5132 does better against group HL_26631.1 cutoff score    98.7544; GAGUC
Sequence 1425 in group HL_75660.5 with cutoff score    95.6093 does better against group HL_76094.1 cutoff score    96.7848; GAAUC
Sequence 1426 in group HL_75660.5 with cutoff score    75.2136 does better against group HL_38901.2 cutoff score    78.1281; AAUUUU
Sequence 1426 in group HL_75660.5 with cutoff score    75.2136 does better against group HL_48417.5 cutoff score    95.4815; AAUUUU
Sequence 1429 in group HL_77082.1 with cutoff score    95.0704 does better against group HL_83632.1 cutoff score   100.0000; ACUCUAAAU
Sequence 1431 in group HL_77082.1 with cutoff score    89.3201 does better against group HL_73266.9 cutoff score    93.9241; UCUGUAAAA
Sequence 1432 in group HL_77082.1 with cutoff score    60.1826 does better against group HL_31585.4 cutoff score    93.3054; GUUUCGAC
Sequence 1442 in group HL_77436.5 with cutoff score    26.0029 does better against group HL_29129.3 cutoff score    81.4776; UUUGGGAAUG
Sequence 1442 in group HL_77436.5 with cutoff score    26.0029 does better against group HL_87463.1 cutoff score    42.3083; UUUGGGAAUG
Sequence 1443 in group HL_77436.5 with cutoff score    26.0029 does better against group HL_29129.3 cutoff score    81.4776; UUUGGGAAUG
Sequence 1443 in group HL_77436.5 with cutoff score    26.0029 does better against group HL_87463.1 cutoff score    42.3083; UUUGGGAAUG
Sequence 1451 in group HL_77436.5 with cutoff score    75.8778 does better against group HL_81538.2 cutoff score    94.2643; GUUAAAAC
Sequence 1455 in group HL_77436.5 with cutoff score    48.6834 does better against group HL_04259.3 cutoff score    59.5021; CGUACAAG
Sequence 1456 in group HL_77436.5 with cutoff score    22.6250 does better against group HL_09452.1 cutoff score    30.1768; GCUUUGGAC
Sequence 1456 in group HL_77436.5 with cutoff score    22.6250 does better against group HL_15802.1 cutoff score    73.8505; GCUUUGGAC
Sequence 1456 in group HL_77436.5 with cutoff score    22.6250 does better against group HL_83632.1 cutoff score    25.5939; GCUUUGGAC
Sequence 1457 in group HL_77436.5 with cutoff score    67.3734 does better against group HL_28252.8 cutoff score    95.4412; GUUCAAGUC
Sequence 1458 in group HL_77436.5 with cutoff score    73.5806 does better against group HL_81538.2 cutoff score    89.3672; CGUAAUAG
Sequence 1465 in group HL_77600.2 with cutoff score    64.2472 does better against group HL_18565.1 cutoff score    96.8021; ACUGCAGAU
Sequence 1465 in group HL_77600.2 with cutoff score    64.2472 does better against group HL_38808.1 cutoff score    79.3434; ACUGCAGAU
Sequence 1465 in group HL_77600.2 with cutoff score    64.2472 does better against group HL_83632.1 cutoff score    76.5559; ACUGCAGAU
Sequence 1472 in group HL_78197.1 with cutoff score    66.7696 does better against group HL_88205.2 cutoff score    97.4720; CGUUGAAAAG
Sequence 1479 in group HL_78347.4 with cutoff score    44.8032 does better against group HL_04642.1 cutoff score    66.1099; UAGCGGUUAG
Sequence 1479 in group HL_78347.4 with cutoff score    44.8032 does better against group HL_23115.1 cutoff score    51.2248; UAGCGGUUAG
Sequence 1479 in group HL_78347.4 with cutoff score    44.8032 does better against group HL_66853.7 cutoff score    54.4232; UAGCGGUUAG
Sequence 1480 in group HL_78347.4 with cutoff score    27.4337 does better against group HL_09452.1 cutoff score    34.1519; CCUUCGUGG
Sequence 1480 in group HL_78347.4 with cutoff score    27.4337 does better against group HL_20535.2 cutoff score    30.0319; CCUUCGUGG
Sequence 1480 in group HL_78347.4 with cutoff score    27.4337 does better against group HL_87553.1 cutoff score    30.4863; CCUUCGUGG
Sequence 1481 in group HL_78347.4 with cutoff score    63.0330 does better against group HL_06059.6 cutoff score    98.6883; CCUGAUAAG
Sequence 1481 in group HL_78347.4 with cutoff score    63.0330 does better against group HL_33983.1 cutoff score   100.0000; CCUGAUAAG
Sequence 1482 in group HL_78347.4 with cutoff score    63.0330 does better against group HL_06059.6 cutoff score    98.6883; CCUGAUAAG
Sequence 1482 in group HL_78347.4 with cutoff score    63.0330 does better against group HL_33983.1 cutoff score   100.0000; CCUGAUAAG
Sequence 1486 in group HL_78677.1 with cutoff score    89.1123 does better against group HL_04783.2 cutoff score    91.5250; GGUAC
Sequence 1486 in group HL_78677.1 with cutoff score    89.1123 does better against group HL_13189.1 cutoff score    99.2869; GGUAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_04783.2 cutoff score    98.9720; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_37824.7 cutoff score    91.8116; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_38901.2 cutoff score    73.5660; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_50006.2 cutoff score    90.3119; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_52953.3 cutoff score   100.0000; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_53890.2 cutoff score    94.6015; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_65794.5 cutoff score    77.4201; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_75660.5 cutoff score    82.8395; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_82710.2 cutoff score   100.0000; GGAAAC
Sequence 1500 in group HL_80709.3 with cutoff score    71.8923 does better against group HL_93535.1 cutoff score    74.9453; GGAAAC
Sequence 1503 in group HL_80709.3 with cutoff score    53.5462 does better against group HL_38901.2 cutoff score    65.4749; CUGUUG
Sequence 1503 in group HL_80709.3 with cutoff score    53.5462 does better against group HL_56334.1 cutoff score    60.7585; CUGUUG
Sequence 1503 in group HL_80709.3 with cutoff score    53.5462 does better against group HL_69752.2 cutoff score    92.7407; CUGUUG
Sequence 1503 in group HL_80709.3 with cutoff score    53.5462 does better against group HL_70782.2 cutoff score    57.2438; CUGUUG
Sequence 1503 in group HL_80709.3 with cutoff score    53.5462 does better against group HL_86870.2 cutoff score    99.4250; CUGUUG
Sequence 1504 in group HL_80709.3 with cutoff score    68.9813 does better against group HL_86870.2 cutoff score    99.4250; CUCUUG
Sequence 1505 in group HL_80709.3 with cutoff score    68.9813 does better against group HL_86870.2 cutoff score    99.4250; CUCUUG
Sequence 1529 in group HL_81538.2 with cutoff score    22.3247 does better against group HL_07951.3 cutoff score    30.2193; CGGCGAAAG
Sequence 1529 in group HL_81538.2 with cutoff score    22.3247 does better against group HL_10540.1 cutoff score    49.9527; CGGCGAAAG
Sequence 1529 in group HL_81538.2 with cutoff score    22.3247 does better against group HL_93438.2 cutoff score    30.2613; CGGCGAAAG
Sequence 1548 in group HL_83632.1 with cutoff score    98.1765 does better against group HL_06059.6 cutoff score    99.5381; ACUGAAAAU
Sequence 1560 in group HL_84299.4 with cutoff score    67.0604 does better against group HL_20167.2 cutoff score   100.0000; GGUAAGUUC
Sequence 1571 in group HL_85367.2 with cutoff score    42.6069 does better against group HL_32735.2 cutoff score    49.2849; UGUUCAAAG
Sequence 1572 in group HL_85367.2 with cutoff score    42.6069 does better against group HL_32735.2 cutoff score    49.2849; UGUUCAAAG
Sequence 1589 in group HL_86870.2 with cutoff score    86.7629 does better against group HL_75660.5 cutoff score    97.0570; CAAUG
Sequence 1589 in group HL_86870.2 with cutoff score    86.7629 does better against group HL_76094.1 cutoff score   100.0000; CAAUG
Sequence 1599 in group HL_87553.1 with cutoff score    59.3329 does better against group HL_06059.6 cutoff score    82.0340; UCUCAUAAG
Sequence 1603 in group HL_87954.2 with cutoff score    85.5707 does better against group HL_59735.5 cutoff score    95.0724; AGAAAUU
Sequence 1632 in group HL_89567.2 with cutoff score    59.6081 does better against group HL_85993.1 cutoff score   100.0000; AGGCAAUU
Sequence 1669 in group HL_93324.4 with cutoff score    51.3690 does better against group HL_97983.1 cutoff score    65.6276; CGGAAUUUG
Sequence 1670 in group HL_93324.4 with cutoff score    36.2029 does better against group HL_83808.4 cutoff score    53.4033; UUCCUCCCG
Sequence 1672 in group HL_93324.4 with cutoff score    51.3690 does better against group HL_97983.1 cutoff score    65.6276; CGGAAUUUG
Sequence 1673 in group HL_93324.4 with cutoff score    36.2029 does better against group HL_83808.4 cutoff score    53.4033; UUCCUCCCG
Sequence 1692 in group HL_93616.2 with cutoff score    92.6683 does better against group HL_80411.1 cutoff score   100.0000; CAGCCCGGUAG
Sequence 1698 in group HL_93616.2 with cutoff score    54.4661 does better against group HL_09260.2 cutoff score    71.5765; UAGCCAGGACAG
