Comparison of motif group and JAR3D alignment of sequences each motif group

HL_00317.1 had 0 misalignments
HL_00914.1 had 0 misalignments
HL_01255.1 had 0 misalignments
HL_01609.3 had 0 misalignments
HL_01962.2 had 0 misalignments
HL_02483.1 had 0 misalignments
HL_02581.1 had 0 misalignments
HL_02817.2 had 0 misalignments
HL_02887.3 had 0 misalignments
HL_04171.7 had 0 misalignments
HL_04259.3 had 0 misalignments
HL_04641.1 had 0 misalignments
HL_04642.1 had 0 misalignments
HL_04725.1 had 0 misalignments
HL_04783.2 had 2 misalignments
HL_05304.3 had 0 misalignments
HL_06059.6 had 0 misalignments
HL_06226.4 had 0 misalignments
HL_07480.2 had 0 misalignments
HL_07583.1 had 0 misalignments
HL_07886.3 had 1 misalignment
HL_07903.1 had 0 misalignments
HL_07951.3 had 0 misalignments
HL_08100.1 had 0 misalignments
HL_08510.1 had 0 misalignments
HL_08602.1 had 0 misalignments
HL_09260.2 had 0 misalignments
HL_09452.1 had 0 misalignments
HL_10453.3 had 3 misalignments
HL_10456.1 had 0 misalignments
HL_10540.1 had 0 misalignments
HL_11542.1 had 0 misalignments
HL_12758.3 had 0 misalignments
HL_12870.1 had 0 misalignments
HL_13189.1 had 0 misalignments
HL_13529.1 had 0 misalignments
HL_13963.3 had 0 misalignments
HL_13971.1 had 0 misalignments
HL_14757.1 had 0 misalignments
HL_15118.1 had 0 misalignments
HL_15574.1 had 0 misalignments
HL_15802.1 had 0 misalignments
HL_16398.2 had 0 misalignments
HL_16991.1 had 0 misalignments
HL_18423.1 had 0 misalignments
HL_18565.1 had 0 misalignments
HL_18978.1 had 0 misalignments
HL_19210.3 had 0 misalignments
HL_20167.2 had 2 misalignments
HL_20535.2 had 0 misalignments
HL_20743.5 had 0 misalignments
HL_20751.2 had 0 misalignments
HL_20781.1 had 0 misalignments
HL_20811.4 had 0 misalignments
HL_21372.1 had 0 misalignments
HL_21400.1 had 0 misalignments
HL_22135.1 had 0 misalignments
HL_22584.6 had 0 misalignments
HL_22622.1 had 0 misalignments
HL_23010.1 had 0 misalignments
HL_23115.1 had 0 misalignments
HL_23509.1 had 0 misalignments
HL_24792.1 had 0 misalignments
HL_25061.1 had 0 misalignments
HL_25847.2 had 0 misalignments
HL_25967.2 had 0 misalignments
HL_26631.1 had 0 misalignments
HL_26934.1 had 0 misalignments
HL_27483.1 had 0 misalignments
HL_27670.2 had 0 misalignments
HL_28075.1 had 1 misalignment
HL_28252.8 had 0 misalignments
HL_28791.1 had 0 misalignments
HL_29129.3 had 0 misalignments
HL_29762.1 had 0 misalignments
HL_29958.1 had 0 misalignments
HL_29966.1 had 0 misalignments
HL_30068.2 had 0 misalignments
HL_30680.3 had 3 misalignments
HL_31581.6 had 0 misalignments
HL_31585.4 had 2 misalignments
HL_32346.4 had 0 misalignments
HL_32392.1 had 0 misalignments
HL_32735.2 had 0 misalignments
HL_33074.4 had 0 misalignments
HL_33983.1 had 0 misalignments
HL_34617.5 had 0 misalignments
HL_34964.1 had 0 misalignments
HL_35354.1 had 0 misalignments
HL_35677.3 had 0 misalignments
HL_35941.1 had 0 misalignments
HL_36335.1 had 0 misalignments
HL_36684.4 had 0 misalignments
HL_37344.1 had 0 misalignments
HL_37369.2 had 0 misalignments
HL_37824.7 had 3 misalignments
HL_38046.1 had 0 misalignments
HL_38168.1 had 0 misalignments
HL_38649.1 had 0 misalignments
HL_38808.1 had 0 misalignments
HL_38901.2 had 0 misalignments
HL_39243.1 had 0 misalignments
HL_40252.4 had 0 misalignments
HL_41464.2 had 1 misalignment
HL_41543.1 had 0 misalignments
HL_41902.1 had 0 misalignments
HL_42046.2 had 0 misalignments
HL_42998.2 had 0 misalignments
HL_43517.1 had 0 misalignments
HL_45175.1 had 0 misalignments
HL_45785.1 had 0 misalignments
HL_46501.1 had 0 misalignments
HL_47732.1 had 0 misalignments
HL_47787.2 had 0 misalignments
HL_47854.1 had 0 misalignments
HL_48417.5 had 9 misalignments
HL_48778.2 had 6 misalignments
HL_49922.4 had 0 misalignments
HL_49941.1 had 0 misalignments
HL_50006.2 had 0 misalignments
HL_50318.1 had 0 misalignments
HL_50418.1 had 0 misalignments
HL_50537.6 had 0 misalignments
HL_50779.4 had 0 misalignments
HL_50851.1 had 0 misalignments
HL_50860.2 had 0 misalignments
HL_51447.1 had 0 misalignments
HL_51921.1 had 0 misalignments
HL_52953.3 had 0 misalignments
HL_53454.2 had 1 misalignment
HL_53504.3 had 0 misalignments
HL_53890.2 had 3 misalignments
HL_55195.3 had 0 misalignments
HL_55305.1 had 0 misalignments
HL_55436.1 had 0 misalignments
HL_56131.2 had 0 misalignments
HL_56334.1 had 1 misalignment
HL_56676.1 had 0 misalignments
HL_57176.2 had 0 misalignments
HL_57863.1 had 0 misalignments
HL_57875.1 had 0 misalignments
HL_58224.1 had 0 misalignments
HL_58539.1 had 0 misalignments
HL_59330.1 had 0 misalignments
HL_59564.1 had 0 misalignments
HL_59735.5 had 0 misalignments
HL_59843.1 had 0 misalignments
HL_60266.1 had 0 misalignments
HL_60293.1 had 1 misalignment
HL_60914.1 had 0 misalignments
HL_61996.2 had 0 misalignments
HL_62934.1 had 0 misalignments
HL_63355.1 had 0 misalignments
HL_64292.1 had 0 misalignments
HL_64690.6 had 2 misalignments
HL_65313.1 had 0 misalignments
HL_65794.5 had 0 misalignments
HL_66103.1 had 0 misalignments
HL_66482.1 had 0 misalignments
HL_66853.7 had 0 misalignments
HL_67079.1 had 0 misalignments
HL_67407.5 had 0 misalignments
HL_67667.2 had 0 misalignments
HL_68257.1 had 0 misalignments
HL_68572.1 had 0 misalignments
HL_68767.1 had 0 misalignments
HL_69139.1 had 0 misalignments
HL_69752.2 had 0 misalignments
HL_70658.1 had 0 misalignments
HL_70751.1 had 0 misalignments
HL_70782.2 had 0 misalignments
HL_71391.1 had 0 misalignments
HL_72628.1 had 0 misalignments
HL_73183.1 had 0 misalignments
HL_73247.1 had 0 misalignments
HL_73255.1 had 0 misalignments
HL_73266.9 had 0 misalignments
HL_73916.1 had 0 misalignments
HL_74055.2 had 0 misalignments
HL_74292.1 had 0 misalignments
HL_74379.3 had 0 misalignments
HL_75293.5 had 0 misalignments
HL_75660.5 had 0 misalignments
HL_76094.1 had 0 misalignments
HL_77082.1 had 0 misalignments
HL_77436.5 had 11 misalignments
HL_77600.2 had 0 misalignments
HL_78197.1 had 0 misalignments
HL_78284.1 had 0 misalignments
HL_78347.4 had 0 misalignments
HL_78677.1 had 0 misalignments
HL_80008.1 had 0 misalignments
HL_80241.1 had 0 misalignments
HL_80362.1 had 0 misalignments
HL_80411.1 had 0 misalignments
HL_80599.2 had 0 misalignments
HL_80709.3 had 0 misalignments
HL_80922.2 had 0 misalignments
HL_81100.2 had 0 misalignments
HL_81205.3 had 0 misalignments
HL_81312.1 had 0 misalignments
HL_81538.2 had 1 misalignment
HL_81545.2 had 0 misalignments
HL_82710.2 had 1 misalignment
HL_83632.1 had 0 misalignments
HL_83808.4 had 0 misalignments
HL_84299.4 had 1 misalignment
HL_84847.1 had 0 misalignments
HL_85367.2 had 0 misalignments
HL_85434.1 had 0 misalignments
HL_85461.1 had 0 misalignments
HL_85993.1 had 0 misalignments
HL_86012.1 had 0 misalignments
HL_86109.1 had 0 misalignments
HL_86769.4 had 0 misalignments
HL_86870.2 had 0 misalignments
HL_86883.1 had 0 misalignments
HL_87463.1 had 0 misalignments
HL_87553.1 had 1 misalignment
HL_87954.2 had 0 misalignments
HL_88205.2 had 0 misalignments
HL_88364.2 had 1 misalignment
HL_88558.1 had 0 misalignments
HL_89199.2 had 0 misalignments
HL_89346.1 had 0 misalignments
HL_89567.2 had 1 misalignment
HL_89881.5 had 0 misalignments
HL_89893.1 had 0 misalignments
HL_90620.1 had 0 misalignments
HL_91503.7 had 0 misalignments
HL_91641.1 had 0 misalignments
HL_91939.2 had 0 misalignments
HL_92488.1 had 0 misalignments
HL_93135.1 had 0 misalignments
HL_93324.4 had 2 misalignments
HL_93383.1 had 0 misalignments
HL_93438.2 had 0 misalignments
HL_93535.1 had 0 misalignments
HL_93616.2 had 0 misalignments
HL_94376.1 had 0 misalignments
HL_94980.1 had 0 misalignments
HL_97733.1 had 0 misalignments
HL_97756.2 had 0 misalignments
HL_97917.2 had 0 misalignments
HL_97983.1 had 0 misalignments
HL_98252.1 had 0 misalignments
HL_98864.1 had 0 misalignments
HL_98870.1 had 0 misalignments
HL_99040.1 had 0 misalignments
HL_99324.1 had 0 misalignments
HL_99748.1 had 0 misalignments
HL_99769.3 had 1 misalignment
HL_99867.1 had 0 misalignments