Alignment of HL_28252.8 sequences from 3D to the JAR3D model

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The correspondence between sequences from 3D structures and the motif group is shown in blue and the JAR3D alignment of the sequences to the motif group is shown in black. Occasionally the two disagree, in which case the JAR3D alignment is shown in red.

Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group:	2 2 1	4 7 2	6 8 3	8 8 4	10 8 5	12 7 6	14 5 7	16 3 8	17 2 I	18 2 9	In acceptance region	Cutoff score	Full edit distance	Interior edit distance	Alignment score deficit
HL_28252.8_Instance_1 HL_28252.8,HL_4RDX_003,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_1 HL_28252.84RDX_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_2 HL_28252.8,HL_6UFM_003,G54_C62	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_2 HL_28252.86UFM_G54_C62	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_3 HL_28252.8,HL_2ZUE_003,G953_C961	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_3 HL_28252.82ZUE_G953_C961	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_4 HL_28252.8,HL_3WQY_003,G1653_C1661	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_4 HL_28252.83WQY_G_1653_C_1661	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_5 HL_28252.8,HL_7KJT_003,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_5 HL_28252.87KJT_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_6 HL_28252.8,HL_6UGG_006,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_6 HL_28252.86UGG_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_7 HL_28252.8,HL_5AH5_008,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_7 HL_28252.85AH5_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_8 HL_28252.8,HL_7MRL_003,G56_C64	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_8 HL_28252.87MRL_G56_C64	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_9 HL_28252.8,HL_4YYE_003,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_9 HL_28252.84YYE_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_10 HL_28252.8,HL_8UO6_008,G111_C119	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_10 HL_28252.88UO6_G111_C119	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_11 HL_28252.8,HL_2ZZN_006,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_11 HL_28252.82ZZN_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_12 HL_28252.8,HL_8UO6_004,G111_C119	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_12 HL_28252.88UO6_G111_C119	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_13 HL_28252.8,HL_5HR7_006,G52_C60	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_13 HL_28252.85HR7_G52_C60	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_14 HL_28252.8,HL_8VU0_003,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_14 HL_28252.88VU0_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_15 HL_28252.8,HL_7E8O_003,G52_C60	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_15 HL_28252.87E8O_G52_C60	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_16 HL_28252.8,HL_3RG5_008,G53_C61	G	U	U	C	A	A	U	U		C
HL_28252.8_Sequence_16 HL_28252.83RG5_G53_C61	G	U	U	C	A	A	U	U		C	true	92	0	0	1.28
HL_28252.8_Instance_17 HL_28252.8,HL_9MTS_103,G53_C61	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_17 HL_28252.89MTS_G53_C61	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_18 HL_28252.8,HL_2BTE_004,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_18 HL_28252.82BTE_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_19 HL_28252.8,HL_1J1U_003,G554_C562	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_19 HL_28252.81J1U_G554_C562	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_20 HL_28252.8,HL_3AL0_003,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_20 HL_28252.83AL0_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_21 HL_28252.8,HL_1QTQ_003,G953_C961	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_21 HL_28252.81QTQ_G953_C961	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_22 HL_28252.8,HL_6JXM_003,G74_C82	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_22 HL_28252.86JXM_G74_C82	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_23 HL_28252.8,HL_8V1H_002,G38_C46	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_23 HL_28252.88V1H_G38_C46	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_24 HL_28252.8,HL_4YCO_003,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_24 HL_28252.84YCO_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_25 HL_28252.8,HL_8G9Z_004,G53_C61	G	U	U	C	A	A	U	U		C
HL_28252.8_Sequence_25 HL_28252.88G9Z_G53_C61	G	U	U	C	A	A	U	U		C	true	92	0	0	1.28
HL_28252.8_Instance_26 HL_28252.8,HL_5X6B_003,G52_C60	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_26 HL_28252.85X6B_G52_C60	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_27 HL_28252.8,HL_4YCP_003,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_27 HL_28252.84YCP_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_28 HL_28252.8,HL_8S95_005,G133_C141	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_28 HL_28252.88S95_G133_C141	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_29 HL_28252.8,HL_7LYF_003,G116_C124	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_29 HL_28252.87LYF_G116_C124	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_30 HL_28252.8,HL_9DFC_105,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_30 HL_28252.89DFC_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_31 HL_28252.8,HL_4WJ4_003,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_31 HL_28252.84WJ4_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_32 HL_28252.8,HL_3ZGZ_003,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_32 HL_28252.83ZGZ_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_33 HL_28252.8,HL_5HR6_003,G52_C60	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_33 HL_28252.85HR6_G52_C60	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_34 HL_28252.8,HL_7UQ6_003,G64_C72	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_34 HL_28252.87UQ6_G64_C72	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_35 HL_28252.8,HL_3W3S_004,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_35 HL_28252.83W3S_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_36 HL_28252.8,HL_4LCK_003,G52_C60	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_36 HL_28252.84LCK_G52_C60	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_37 HL_28252.8,HL_5WT1_003,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_37 HL_28252.85WT1_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_38 HL_28252.8,HL_2DU3_003,G952_C960	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_38 HL_28252.82DU3_G952_C960	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_39 HL_28252.8,HL_5AXM_003,G53_C61	G	U	U	C	G	A	U	C		C
HL_28252.8_Sequence_39 HL_28252.85AXM_G53_C61	G	U	U	C	G	A	U	C		C	true	79	0	0	3.24
HL_28252.8_Instance_40 HL_28252.8,HL_8WND_005,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_40 HL_28252.88WND_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_41 HL_28252.8,HL_2ZZM_004,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_41 HL_28252.82ZZM_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_42 HL_28252.8,HL_4X4V_001,G12_C20	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_42 HL_28252.84X4V_G12_C20	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_43 HL_28252.8,HL_4GCW_002,G53_C61	G	U	U	C	G	A	G	C		C
HL_28252.8_Sequence_43 HL_28252.84GCW_G53_C61	G	U	U	C	G	A	G	C		C	true	83	0	0	2.66
HL_28252.8_Instance_44 HL_28252.8,HL_4V90_034,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_44 HL_28252.84V90_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_45 HL_28252.8,HL_7YSE_003,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_45 HL_28252.87YSE_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_46 HL_28252.8,HL_4P5J_003,G46_C54	G	U	G	C	A	A	C	U		C
HL_28252.8_Sequence_46 HL_28252.84P5J_G46_C54	G	U	G	C	A	A	C	U		C	true	74	0	0	4.05
HL_28252.8_Instance_47 HL_28252.8,HL_8K0Y_002,G37_C45	G	U	U	C	A	A	U	U		C
HL_28252.8_Sequence_47 HL_28252.88K0Y_G37_C45	G	U	U	C	A	A	U	U		C	true	92	0	0	1.28
HL_28252.8_Instance_48 HL_28252.8,HL_4WT8_217,G54_C62	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_48 HL_28252.84WT8_G54_C62	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_49 HL_28252.8,HL_4V9Q_215,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_49 HL_28252.84V9Q_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_50 HL_28252.8,HL_8Z1P_002,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_50 HL_28252.88Z1P_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_51 HL_28252.8,HL_1WZ2_008,G965_C973	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_51 HL_28252.81WZ2_G965_C973	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_52 HL_28252.8,HL_7EQJ_006,G53_C61	G	U	U	C	G	A	U	C		C
HL_28252.8_Sequence_52 HL_28252.87EQJ_G53_C61	G	U	U	C	G	A	U	C		C	true	79	0	0	3.24
HL_28252.8_Instance_53 HL_28252.8,HL_2AZX_006,G553_C561	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_53 HL_28252.82AZX_G553_C561	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_54 HL_28252.8,HL_3ADD_004,G53_C61	G	U	U	C	A	A	U	U		C
HL_28252.8_Sequence_54 HL_28252.83ADD_G53_C61	G	U	U	C	A	A	U	U		C	true	92	0	0	1.28
HL_28252.8_Instance_55 HL_28252.8,HL_7K98_003,G54_C62	G	U	U	C	G	A	U	C		C
HL_28252.8_Sequence_55 HL_28252.87K98_G54_C62	G	U	U	C	G	A	U	C		C	true	79	0	0	3.24
HL_28252.8_Instance_56 HL_28252.8,HL_1FFY_003,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_56 HL_28252.81FFY_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_57 HL_28252.8,HL_1QU2_003,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_57 HL_28252.81QU2_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_58 HL_28252.8,HL_3FOZ_006,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_58 HL_28252.83FOZ_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_59 HL_28252.8,HL_6MJ0_009,G66_C74	G	U	G	C	A	A	C	U		C
HL_28252.8_Sequence_59 HL_28252.86MJ0_G66_C74	G	U	G	C	A	A	C	U		C	true	74	0	0	4.05
HL_28252.8_Instance_60 HL_28252.8,HL_5UD5_003,G53_C61	G	U	U	A	G	A	U	U		C
HL_28252.8_Sequence_60 HL_28252.85UD5_G53_C61	G	U	U	A	G	A	U	U		C	true	80	0	0	3.04
HL_28252.8_Instance_61 HL_28252.8,HL_5B63_004,G954_C962	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_61 HL_28252.85B63_G954_C962	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_62 HL_28252.8,HL_4MGN_004,G52_C60	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_62 HL_28252.84MGN_G52_C60	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_63 HL_28252.8,HL_2D6F_006,G953_C961	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_63 HL_28252.82D6F_G953_C961	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_64 HL_28252.8,HL_3AMU_003,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_64 HL_28252.83AMU_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_65 HL_28252.8,HL_2DER_006,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_65 HL_28252.82DER_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_66 HL_28252.8,HL_5WWT_002,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_66 HL_28252.85WWT_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_67 HL_28252.8,HL_4V8Q_110,G66_C74	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_67 HL_28252.84V8Q_G66_C74	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_68 HL_28252.8,HL_1U0B_003,G53_C61	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_68 HL_28252.81U0B_G53_C61	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_69 HL_28252.8,HL_3IGI_001,G30_C38	G	U	G	A	G	A	G	U		C
HL_28252.8_Sequence_69 HL_28252.83IGI_G30_C38	G	U	G	A	G	A	G	U		C	true	71	0	0	4.43
HL_28252.8_Instance_70 HL_28252.8,HL_1N78_003,G553_C561	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_70 HL_28252.81N78_G553_C561	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_71 HL_28252.8,HL_8SP9_004,G130_C138	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_71 HL_28252.88SP9_G130_C138	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_72 HL_28252.8,HL_6UFG_008,G54_C62	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_72 HL_28252.86UFG_G54_C62	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_73 HL_28252.8,HL_7UZ0_003,G68_C76	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_73 HL_28252.87UZ0_G68_C76	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_74 HL_28252.8,HL_2DRA_001,G12_C20	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_74 HL_28252.82DRA_G12_C20	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_75 HL_28252.8,HL_6CU1_001,G24_C32	G	U	U	C	G	A	G	A		C
HL_28252.8_Sequence_75 HL_28252.86CU1_G24_C32	G	U	U	C	G	A	G	A		C	true	76	0	0	3.66
HL_28252.8_Instance_76 HL_28252.8,HL_1H3E_004,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_76 HL_28252.81H3E_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_77 HL_28252.8,HL_3OVB_001,G12_C20	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_77 HL_28252.83OVB_G12_C20	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_78 HL_28252.8,HL_3EPH_003,G53_C61	G	U	U	C	G	A	U	C		C
HL_28252.8_Sequence_78 HL_28252.83EPH_G53_C61	G	U	U	C	G	A	U	C		C	true	79	0	0	3.24
HL_28252.8_Instance_79 HL_28252.8,HL_3WFS_003,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_79 HL_28252.83WFS_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_80 HL_28252.8,HL_4TUE_035,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_80 HL_28252.84TUE_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_81 HL_28252.8,HL_6JQ5_001,G6_C14	G	U	G	A	G	A	A	U		C
HL_28252.8_Sequence_81 HL_28252.86JQ5_G6_C14	G	U	G	A	G	A	A	U		C	true	73	0	0	4.16
HL_28252.8_Instance_82 HL_28252.8,HL_6JQ6_003,G6_C14	G	U	G	A	G	A	A	U		C
HL_28252.8_Sequence_82 HL_28252.86JQ6_G6_C14	G	U	G	A	G	A	A	U		C	true	73	0	0	4.16
HL_28252.8_Instance_83 HL_28252.8,HL_6JQ5_003,G6_C14	G	U	G	A	G	A	A	U		C
HL_28252.8_Sequence_83 HL_28252.86JQ5_G6_C14	G	U	G	A	G	A	A	U		C	true	73	0	0	4.16
HL_28252.8_Instance_84 HL_28252.8,HL_3TUP_003,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_84 HL_28252.83TUP_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_85 HL_28252.8,HL_6GSL_210,G54_C62	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_85 HL_28252.86GSL_G54_C62	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_86 HL_28252.8,HL_2CSX_003,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_86 HL_28252.82CSX_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_87 HL_28252.8,HL_8K1E_002,G39_C47	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_87 HL_28252.88K1E_G39_C47	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_88 HL_28252.8,HL_1F7U_003,G953_C961	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_88 HL_28252.81F7U_G953_C961	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_89 HL_28252.8,HL_5E6M_003,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_89 HL_28252.85E6M_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_90 HL_28252.8,HL_7VNV_003,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_90 HL_28252.87VNV_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_91 HL_28252.8,HL_3ICQ_005,G53_C61	G	U	U	C	G	A	U	C		C
HL_28252.8_Sequence_91 HL_28252.83ICQ_G53_C61	G	U	U	C	G	A	U	C		C	true	79	0	0	3.24
HL_28252.8_Instance_92 HL_28252.8,HL_3AM1_004,G59_C67	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_92 HL_28252.83AM1_G59_C67	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_93 HL_28252.8,HL_4JYZ_003,G953_C961	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_93 HL_28252.84JYZ_G953_C961	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_94 HL_28252.8,HL_3KFU_006,G53_C61	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_94 HL_28252.83KFU_G53_C61	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_95 HL_28252.8,HL_4V8N_145,G55_C63	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_95 HL_28252.84V8N_G55_C63	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_96 HL_28252.8,HL_8JOZ_004,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_96 HL_28252.88JOZ_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_97 HL_28252.8,HL_5E81_207,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_97 HL_28252.85E81_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_98 HL_28252.8,HL_1IL2_003,G953_C961	G	U	U	C	A	A	U	U		C
HL_28252.8_Sequence_98 HL_28252.81IL2_G953_C961	G	U	U	C	A	A	U	U		C	true	92	0	0	1.28
HL_28252.8_Instance_99 HL_28252.8,HL_6UFH_008,G54_C62	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_99 HL_28252.86UFH_G54_C62	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_100 HL_28252.8,HL_4QEI_003,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_100 HL_28252.84QEI_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_101 HL_28252.8,HL_5E81_213,G54_C62	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_101 HL_28252.85E81_G54_C62	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_102 HL_28252.8,HL_1QF6_003,G53_C61	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_102 HL_28252.81QF6_G53_C61	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_103 HL_28252.8,HL_6CFJ_108,G53_C61	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_103 HL_28252.86CFJ_G53_C61	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_104 HL_28252.8,HL_1B23_003,G53_C61	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_104 HL_28252.81B23_G53_C61	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_105 HL_28252.8,HL_5Y85_003,G11_C19	G	U	G	C	A	A	G	U		C
HL_28252.8_Sequence_105 HL_28252.85Y85_G11_C19	G	U	G	C	A	A	G	U		C	true	83	0	0	2.68
HL_28252.8_Instance_106 HL_28252.8,HL_1FIR_003,G53_C61	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_106 HL_28252.81FIR_G53_C61	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_107 HL_28252.8,HL_2DLC_003,G553_C561	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_107 HL_28252.82DLC_G553_C561	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_108 HL_28252.8,HL_7U2I_105,G53_C61	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_108 HL_28252.87U2I_G53_C61	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_109 HL_28252.8,HL_9DFE_031,G1281_C1289	G	U	G	A	G	A	A	U		C
HL_28252.8_Sequence_109 HL_28252.89DFE_G_1281_C_1289	G	U	G	A	G	A	A	U		C	true	73	0	0	4.16
HL_28252.8_Instance_110 HL_28252.8,HL_5IB8_209,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_110 HL_28252.85IB8_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_111 HL_28252.8,HL_5J7L_165,G1281_C1289	G	U	G	A	A	A	A	G		C
HL_28252.8_Sequence_111 HL_28252.85J7L_G_1281_C_1289	G	U	G	A	A	A	A	G		C	true	48	0	0	7.99
HL_28252.8_Instance_112 HL_28252.8,HL_1J2B_002,G954_C962	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_112 HL_28252.81J2B_G954_C962	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_113 HL_28252.8,HL_4V9F_018,U623_A632	U	U	U	U	G	A	A	A	A	A
HL_28252.8_Sequence_113 HL_28252.84V9F_U623_A632	U	U	U	U	G	A	A	A	A	A	true	19	0	0	12.42
HL_28252.8_Instance_114 HL_28252.8,HL_1H4S_003,G53_C61	G	U	U	C	A	G	A	U		C
HL_28252.8_Sequence_114 HL_28252.81H4S_G53_C61	G	U	U	C	A	G	A	U		C	true	69	0	0	4.83
HL_28252.8_Instance_115 HL_28252.8,HL_8P9A_143,A1462_U1470	A	U	G	A	G	A	A	C		U
HL_28252.8_Sequence_115 HL_28252.88P9A_A_1462_U_1470	A	U	G	A	G	A	A	C		U	true	39	0	0	9.35
HL_28252.8_Instance_116 HL_28252.8,HL_5IBB_211,G53_C61	G	U	U	C	G	A	U	C		C
HL_28252.8_Sequence_116 HL_28252.85IBB_G53_C61	G	U	U	C	G	A	U	C		C	true	79	0	0	3.24
HL_28252.8_Instance_117 HL_28252.8,HL_7A0S_032,G1294_C1302	G	U	G	A	G	A	A	U		C
HL_28252.8_Sequence_117 HL_28252.87A0S_G_1294_C_1302	G	U	G	A	G	A	A	U		C	true	73	0	0	4.16
HL_28252.8_Instance_118 HL_28252.8,HL_2CZJ_002,G53_C61	G	U	U	C	G	A	C	U		C
HL_28252.8_Sequence_118 HL_28252.82CZJ_G53_C61	G	U	U	C	G	A	C	U		C	true	89	0	0	1.64
HL_28252.8_Instance_119 HL_28252.8,HL_5T5A_001,G21_C29	G	U	G	C	A	A	G	C		C
HL_28252.8_Sequence_119 HL_28252.85T5A_G21_C29	G	U	G	C	A	A	G	C		C	true	67	0	0	5.07
HL_28252.8_Instance_120 HL_28252.8,HL_4WF9_018,U609_A618	U	U	U	U	G	U	A	G	A	A
HL_28252.8_Sequence_120 HL_28252.84WF9_U609_A618	U	U	U	U	G	U	A	G	A	A	true	-5	0	0	16.17
HL_28252.8_Instance_121 HL_28252.8,HL_4WZD_221,G62_C70	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_121 HL_28252.84WZD_G62_C70	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_122 HL_28252.8,HL_5J7L_150,U566_A575	U	U	U	U	G	U	A	U	A	A
HL_28252.8_Sequence_122 HL_28252.85J7L_U566_A575	U	U	U	U	G	U	A	U	A	A	true	17	0	0	12.77
HL_28252.8_Instance_123 HL_28252.8,HL_8CRE_030,A1458_U1466	A	U	G	A	G	A	A	C		U
HL_28252.8_Sequence_123 HL_28252.88CRE_A_1458_U_1466	A	U	G	A	G	A	A	C		U	true	39	0	0	9.35
HL_28252.8_Instance_124 HL_28252.8,HL_4WF9_032,G1318_C1326	G	U	G	A	G	A	A	U		C
HL_28252.8_Sequence_124 HL_28252.84WF9_G_1318_C_1326	G	U	G	A	G	A	A	U		C	true	73	0	0	4.16
HL_28252.8_Instance_125 HL_28252.8,HL_1GAX_006,G952_C960	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_125 HL_28252.81GAX_G952_C960	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_126 HL_28252.8,HL_6NWY_035,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_126 HL_28252.86NWY_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_127 HL_28252.8,HL_4GXY_002,G49_C57	G	U	G	C	A	A	G	U		C
HL_28252.8_Sequence_127 HL_28252.84GXY_G49_C57	G	U	G	C	A	A	G	U		C	true	83	0	0	2.68
HL_28252.8_Instance_128 HL_28252.8,HL_7A0S_018,U575_A584	U	A	U	U	G	A	A	G	C	A
HL_28252.8_Sequence_128 HL_28252.87A0S_U575_A584	U	A	U	U	G	A	A	G	C	A	true	-3	0	0	15.83
HL_28252.8_Instance_129 HL_28252.8,HL_8CRE_013,U638_A647	U	C	U	U	G	A	A	A	C	A
HL_28252.8_Sequence_129 HL_28252.88CRE_U638_A647	U	C	U	U	G	A	A	A	C	A	true	1	0	0	15.22
HL_28252.8_Instance_130 HL_28252.8,HL_4WSM_211,G64_C72	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_130 HL_28252.84WSM_G64_C72	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_131 HL_28252.8,HL_9DFE_016,U566_A575	U	A	U	U	G	A	A	G	C	A
HL_28252.8_Sequence_131 HL_28252.89DFE_U566_A575	U	A	U	U	G	A	A	G	C	A	true	-3	0	0	15.83
HL_28252.8_Instance_132 HL_28252.8,HL_2ZNI_003,G53_C61	G	U	G	A	A	A	C	U		C
HL_28252.8_Sequence_132 HL_28252.82ZNI_G53_C61	G	U	G	A	A	A	C	U		C	true	59	0	0	6.24
HL_28252.8_Instance_133 HL_28252.8,HL_8P9A_126,U640_A649	U	C	U	U	G	A	A	A	C	A
HL_28252.8_Sequence_133 HL_28252.88P9A_U640_A649	U	C	U	U	G	A	A	A	C	A	true	1	0	0	15.22
HL_28252.8_Instance_134 HL_28252.8,HL_4V9F_034,G1387_C1395	G	U	G	A	G	A	A	C		C
HL_28252.8_Sequence_134 HL_28252.84V9F_G_1387_C_1395	G	U	G	A	G	A	A	C		C	true	57	0	0	6.56
HL_28252.8_Instance_135 HL_28252.8,HL_4WSM_254,G64_C72	G	U	U	C	A	A	G	U		C
HL_28252.8_Sequence_135 HL_28252.84WSM_G64_C72	G	U	U	C	A	A	G	U		C	true	95	0	0	0.70
HL_28252.8_Instance_136 HL_28252.8,HL_4V9K_035,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_136 HL_28252.84V9K_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00
HL_28252.8_Instance_137 HL_28252.8,HL_8V1I_006,G38_C46	G	U	U	C	A	A	A	U		C
HL_28252.8_Sequence_137 HL_28252.88V1I_G38_C46	G	U	U	C	A	A	A	U		C	true	97	0	0	0.43
HL_28252.8_Instance_138 HL_28252.8,HL_6UGI_001,G12_C20	G	U	U	C	G	A	G	U		C
HL_28252.8_Sequence_138 HL_28252.86UGI_G12_C20	G	U	U	C	G	A	G	U		C	true	98	0	0	0.27
HL_28252.8_Instance_139 HL_28252.8,HL_1P6V_004,G45_C53	G	U	U	C	G	A	U	U		C
HL_28252.8_Sequence_139 HL_28252.81P6V_G45_C53	G	U	U	C	G	A	U	U		C	true	94	0	0	0.85
HL_28252.8_Instance_140 HL_28252.8,HL_6GSK_219,G53_C61	G	U	U	C	G	A	A	U		C
HL_28252.8_Sequence_140 HL_28252.86GSK_G53_C61	G	U	U	C	G	A	A	U		C	true	100	0	0	0.00

Conserved interactions between motif group positions in HL_28252.8:

1 2 s35 
1 9 cWW 
2 3 s35 
2 6 tWH 
3 6 s55 
4 5 s35 
6 8 perp 
6 9 s35 
7 8 s35 
8 9 perp 
3 6 6BPh
8 7 7BPh
9 8 7BPh
6 8 2BR

JAR3D SCFG/MRF model for HL_28252.8:

Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node
BasepairNode | Deletion Probability [0.0000189382091011] | Pair Probability [[0.002069682,0.021893024,0.001976302,0.047225891,0.000000000],[0.003937879,0.010325520,0.036415643,0.002494338,0.000000000],[0.002317546,0.771568221,0.000375046,0.005542748,0.000000000],[0.072409136,0.014862413,0.004579921,0.002006692,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.949644782,0.050319517,0.000034808,0.000000893] | Right Letter Distribution [0.388888889,0.500000000,0.055555556,0.055555556,0.000000000] | Left Index [1] | Right Index [9] // Basepair G53 - C61 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.029022403,0.078920570,0.029022403,0.863034623,0.000000000] | Position [2] | Left Index [2] | Right Index [8] // Fixed node on right for 4RDX|1|C|U|60
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // New Initial node after Fixed node
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.419014085,0.080985915,0.320422535,0.179577465,0.000000000] | Position [2] | Left Index [2] | Right Index [7] // Fixed node on right for 4RDX|1|C|G|59
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.020686121,0.000945860,0.004668472,0.000945860,0.000000000],[0.038099791,0.075515875,0.000945860,0.000945860,0.000000000],[0.002531456,0.002277773,0.007206479,0.004252567,0.000000000],[0.810925671,0.000945860,0.010002044,0.019104452,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair U54 - A58 tWH 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node U55:A57
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000509165,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000509165,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.121690428,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.877291242,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U55
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.095070423,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.848591549,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.003521127,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.052816901,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C56
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.390845070,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.003521127,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.602112676,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.003521127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A57

Sequences of instances from HL_28252.8:> HL_28252.8 4RDX G 53 C 61 GUUCAAGUC > HL_28252.8 6UFM G 54 C 62 GUUCGAGUC > HL_28252.8 2ZUE G 953 C 961 GUUCAAAUC > HL_28252.8 3WQY G 1653 C 1661 GUUCAAAUC > HL_28252.8 7KJT G 53 C 61 GUUCAAAUC > HL_28252.8 6UGG G 53 C 61 GUUCGAGUC > HL_28252.8 5AH5 G 53 C 61 GUUCAAGUC > HL_28252.8 7MRL G 56 C 64 GUUCAAGUC > HL_28252.8 4YYE G 53 C 61 GUUCAAAUC > HL_28252.8 8UO6 G 111 C 119 GUUCAAGUC > HL_28252.8 2ZZN G 53 C 61 GUUCAAAUC > HL_28252.8 8UO6 G 111 C 119 GUUCAAGUC > HL_28252.8 5HR7 G 52 C 60 GUUCGAAUC > HL_28252.8 8VU0 G 53 C 61 GUUCAAGUC > HL_28252.8 7E8O G 52 C 60 GUUCGAAUC > HL_28252.8 3RG5 G 53 C 61 GUUCAAUUC > HL_28252.8 9MTS G 53 C 61 GUUCGACUC > HL_28252.8 2BTE G 53 C 61 GUUCAAGUC > HL_28252.8 1J1U G 554 C 562 GUUCAAAUC > HL_28252.8 3AL0 G 53 C 61 GUUCGAGUC > HL_28252.8 1QTQ G 953 C 961 GUUCGAAUC > HL_28252.8 6JXM G 74 C 82 GUUCGAGUC > HL_28252.8 8V1H G 38 C 46 GUUCAAAUC > HL_28252.8 4YCO G 53 C 61 GUUCGAUUC > HL_28252.8 8G9Z G 53 C 61 GUUCAAUUC > HL_28252.8 5X6B G 52 C 60 GUUCAAAUC > HL_28252.8 4YCP G 53 C 61 GUUCGAGUC > HL_28252.8 8S95 G 133 C 141 GUUCAAGUC > HL_28252.8 7LYF G 116 C 124 GUUCAAGUC > HL_28252.8 9DFC G 53 C 61 GUUCAAAUC > HL_28252.8 4WJ4 G 53 C 61 GUUCGAGUC > HL_28252.8 3ZGZ G 53 C 61 GUUCAAGUC > HL_28252.8 5HR6 G 52 C 60 GUUCGAAUC > HL_28252.8 7UQ6 G 64 C 72 GUUCGAGUC > HL_28252.8 3W3S G 53 C 61 GUUCGAUUC > HL_28252.8 4LCK G 52 C 60 GUUCGAAUC > HL_28252.8 5WT1 G 53 C 61 GUUCAAAUC > HL_28252.8 2DU3 G 952 C 960 GUUCGAAUC > HL_28252.8 5AXM G 53 C 61 GUUCGAUCC > HL_28252.8 8WND G 53 C 61 GUUCAAGUC > HL_28252.8 2ZZM G 53 C 61 GUUCAAAUC > HL_28252.8 4X4V G 12 C 20 GUUCGAGUC > HL_28252.8 4GCW G 53 C 61 GUUCGAGCC > HL_28252.8 4V90 G 53 C 61 GUUCGAUUC > HL_28252.8 7YSE G 53 C 61 GUUCGAGUC > HL_28252.8 4P5J G 46 C 54 GUGCAACUC > HL_28252.8 8K0Y G 37 C 45 GUUCAAUUC > HL_28252.8 4WT8 G 54 C 62 GUUCAAAUC > HL_28252.8 4V9Q G 53 C 61 GUUCAAAUC > HL_28252.8 8Z1P G 53 C 61 GUUCAAAUC > HL_28252.8 1WZ2 G 965 C 973 GUUCGAAUC > HL_28252.8 7EQJ G 53 C 61 GUUCGAUCC > HL_28252.8 2AZX G 553 C 561 GUUCGAAUC > HL_28252.8 3ADD G 53 C 61 GUUCAAUUC > HL_28252.8 7K98 G 54 C 62 GUUCGAUCC > HL_28252.8 1FFY G 53 C 61 GUUCAAGUC > HL_28252.8 1QU2 G 53 C 61 GUUCAAGUC > HL_28252.8 3FOZ G 53 C 61 GUUCGAUUC > HL_28252.8 6MJ0 G 66 C 74 GUGCAACUC > HL_28252.8 5UD5 G 53 C 61 GUUAGAUUC > HL_28252.8 5B63 G 954 C 962 GUUCGAAUC > HL_28252.8 4MGN G 52 C 60 GUUCGAGUC > HL_28252.8 2D6F G 953 C 961 GUUCGACUC > HL_28252.8 3AMU G 53 C 61 GUUCGAAUC > HL_28252.8 2DER G 53 C 61 GUUCGAAUC > HL_28252.8 5WWT G 53 C 61 GUUCAAAUC > HL_28252.8 4V8Q G 66 C 74 GUUCGACUC > HL_28252.8 1U0B G 53 C 61 GUUCGACUC > HL_28252.8 3IGI G 30 C 38 GUGAGAGUC > HL_28252.8 1N78 G 553 C 561 GUUCGAUUC > HL_28252.8 8SP9 G 130 C 138 GUUCAAGUC > HL_28252.8 6UFG G 54 C 62 GUUCAAGUC > HL_28252.8 7UZ0 G 68 C 76 GUUCGAGUC > HL_28252.8 2DRA G 12 C 20 GUUCGAUUC > HL_28252.8 6CU1 G 24 C 32 GUUCGAGAC > HL_28252.8 1H3E G 53 C 61 GUUCGAAUC > HL_28252.8 3OVB G 12 C 20 GUUCAAGUC > HL_28252.8 3EPH G 53 C 61 GUUCGAUCC > HL_28252.8 3WFS G 53 C 61 GUUCGAUUC > HL_28252.8 4TUE G 53 C 61 GUUCAAAUC > HL_28252.8 6JQ5 G 6 C 14 GUGAGAAUC > HL_28252.8 6JQ6 G 6 C 14 GUGAGAAUC > HL_28252.8 6JQ5 G 6 C 14 GUGAGAAUC > HL_28252.8 3TUP G 53 C 61 GUUCGAUUC > HL_28252.8 6GSL G 54 C 62 GUUCGAAUC > HL_28252.8 2CSX G 53 C 61 GUUCGAGUC > HL_28252.8 8K1E G 39 C 47 GUUCGAGUC > HL_28252.8 1F7U G 953 C 961 GUUCAAGUC > HL_28252.8 5E6M G 53 C 61 GUUCGAUUC > HL_28252.8 7VNV G 53 C 61 GUUCGAGUC > HL_28252.8 3ICQ G 53 C 61 GUUCGAUCC > HL_28252.8 3AM1 G 59 C 67 GUUCGAUUC > HL_28252.8 4JYZ G 953 C 961 GUUCGAAUC > HL_28252.8 3KFU G 53 C 61 GUUCGAGUC > HL_28252.8 4V8N G 55 C 63 GUUCGAAUC > HL_28252.8 8JOZ G 53 C 61 GUUCGAAUC > HL_28252.8 5E81 G 53 C 61 GUUCGAAUC > HL_28252.8 1IL2 G 953 C 961 GUUCAAUUC > HL_28252.8 6UFH G 54 C 62 GUUCAAGUC > HL_28252.8 4QEI G 53 C 61 GUUCGAUUC > HL_28252.8 5E81 G 54 C 62 GUUCAAAUC > HL_28252.8 1QF6 G 53 C 61 GUUCGACUC > HL_28252.8 6CFJ G 53 C 61 GUUCAAAUC > HL_28252.8 1B23 G 53 C 61 GUUCGACUC > HL_28252.8 5Y85 G 11 C 19 GUGCAAGUC > HL_28252.8 1FIR G 53 C 61 GUUCAAGUC > HL_28252.8 2DLC G 553 C 561 GUUCGACUC > HL_28252.8 7U2I G 53 C 61 GUUCGAUUC > HL_28252.8 9DFE G 1281 C 1289 GUGAGAAUC > HL_28252.8 5IB8 G 53 C 61 GUUCGAAUC > HL_28252.8 5J7L G 1281 C 1289 GUGAAAAGC > HL_28252.8 1J2B G 954 C 962 GUUCAAGUC > HL_28252.8 4V9F U 623 A 632 UUUUGAAAAA > HL_28252.8 1H4S G 53 C 61 GUUCAGAUC > HL_28252.8 8P9A A 1462 U 1470 AUGAGAACU > HL_28252.8 5IBB G 53 C 61 GUUCGAUCC > HL_28252.8 7A0S G 1294 C 1302 GUGAGAAUC > HL_28252.8 2CZJ G 53 C 61 GUUCGACUC > HL_28252.8 5T5A G 21 C 29 GUGCAAGCC > HL_28252.8 4WF9 U 609 A 618 UUUUGUAGAA > HL_28252.8 4WZD G 62 C 70 GUUCGAAUC > HL_28252.8 5J7L U 566 A 575 UUUUGUAUAA > HL_28252.8 8CRE A 1458 U 1466 AUGAGAACU > HL_28252.8 4WF9 G 1318 C 1326 GUGAGAAUC > HL_28252.8 1GAX G 952 C 960 GUUCAAGUC > HL_28252.8 6NWY G 53 C 61 GUUCGAAUC > HL_28252.8 4GXY G 49 C 57 GUGCAAGUC > HL_28252.8 7A0S U 575 A 584 UAUUGAAGCA > HL_28252.8 8CRE U 638 A 647 UCUUGAAACA > HL_28252.8 4WSM G 64 C 72 GUUCAAGUC > HL_28252.8 9DFE U 566 A 575 UAUUGAAGCA > HL_28252.8 2ZNI G 53 C 61 GUGAAACUC > HL_28252.8 8P9A U 640 A 649 UCUUGAAACA > HL_28252.8 4V9F G 1387 C 1395 GUGAGAACC > HL_28252.8 4WSM G 64 C 72 GUUCAAGUC > HL_28252.8 4V9K G 53 C 61 GUUCGAAUC > HL_28252.8 8V1I G 38 C 46 GUUCAAAUC > HL_28252.8 6UGI G 12 C 20 GUUCGAGUC > HL_28252.8 1P6V G 45 C 53 GUUCGAUUC > HL_28252.8 6GSK G 53 C 61 GUUCGAAUC