Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000000157319090] | Pair Probability [[0.008338417,0.016066983,0.009536419,0.164816999,0.000000000],[0.029962714,0.009216170,0.210712076,0.011413917,0.000000000],[0.009530576,0.245129363,0.001858052,0.021227536,0.000000000],[0.193262625,0.011348965,0.048597582,0.008981606,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.001687919,0.608725007,0.388374841,0.001158526,0.000053707] | Right Letter Distribution [0.166666667,0.129629630,0.055555556,0.648148148,0.000000000] | Left Index [1] | Right Index [7] // Basepair C305 - G312 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.016229762,0.003591672,0.016857264,0.003591672,0.000000000],[0.036118998,0.289420151,0.003591672,0.003591672,0.000000000],[0.003591672,0.008609476,0.027314365,0.015974522,0.000000000],[0.511709602,0.003591672,0.020838452,0.035377375,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair U306 - A310 tWH 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G307:A309
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.003906250,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.058593750,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.824218750,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.113281250,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G307
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.325000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.125000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.425000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.125000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G308
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.711956522,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.059782609,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.222826087,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.005434783,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A309
Insertion    | Location [1] | Length Distribution [0.886338815,0.113215093,0.000430710,0.000015382] | Letter Distribution [0.625000000,0.125000000,0.125000000,0.125000000,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
