Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000001231336240] | Pair Probability [[0.008693416,0.016882694,0.009536121,0.188912817,0.000000000],[0.021212105,0.009460668,0.189548413,0.010628111,0.000000000],[0.009554720,0.187122556,0.001967108,0.022177826,0.000000000],[0.253314615,0.009983070,0.051283436,0.009722321,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.008193363,0.983203605,0.008193363,0.000409668] | Right Letter Distribution [0.812500000,0.062500000,0.062500000,0.062500000,0.000000000] | Left Index [1] | Right Index [7] // Basepair U1777 - A1787 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.021774901,0.003830933,0.045403346,0.003830933,0.000000000],[0.159041103,0.246982386,0.003830933,0.003830933,0.000000000],[0.003830933,0.009802312,0.029731307,0.022707913,0.000000000],[0.294642610,0.003830933,0.019745733,0.127182789,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair U1778 - A1785 tWH 
BasepairNode | Deletion Probability [0.0000000000030783] | Pair Probability [[0.031477798,0.000995155,0.004670692,0.000995155,0.000000000],[0.070053184,0.080190499,0.000995155,0.000995155,0.000000000],[0.006966087,0.002385453,0.007568072,0.004426108,0.000000000],[0.771710443,0.000995155,0.005773772,0.009802114,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.000000000,0.000000000,0.008193363,0.983203605,0.008193363,0.000409668] | Left Letter Distribution [0.425000000,0.175000000,0.075000000,0.325000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [5] // Basepair U1779 - A1784 tWH 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A1783:A1783
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.640625000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.015625000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.015625000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.328125000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A1783
