Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000132986348294] | Pair Probability [[0.009090134,0.017359147,0.010410901,0.189212021,0.000000000],[0.047087928,0.010922828,0.210611007,0.012319268,0.000000000],[0.010464996,0.191014404,0.002071820,0.027916884,0.000000000],[0.174803083,0.012212817,0.064348592,0.010154170,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.883805084,0.115305590,0.000858659,0.000030666] | Right Letter Distribution [0.166666667,0.500000000,0.166666667,0.166666667,0.000000000] | Left Index [1] | Right Index [5] // Basepair C1806 - G1811 cWW 
BasepairNode | Deletion Probability [0.0000000034875273] | Pair Probability [[0.107308342,0.106426886,0.001262313,0.005985159,0.000000000],[0.108203585,0.110221448,0.001262313,0.001262313,0.000000000],[0.178074529,0.001262313,0.006421620,0.099223162,0.000000000],[0.148044015,0.122517377,0.001262313,0.001262313,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.222432705,0.441810016,0.113721776,0.220721684,0.001252712,0.000061108] | Left Letter Distribution [0.464285714,0.178571429,0.178571429,0.178571429,0.000000000] | Right Length Distribution [0.663420013,0.334466599,0.002021501,0.000091886] | Right Letter Distribution [0.700000000,0.100000000,0.100000000,0.100000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair G1807 - A1810 tSH 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node A1809:A1809
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.500000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.136363636,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.136363636,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.227272727,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A1809
