Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.006437787,0.013448637,0.007200416,0.253155440,0.000000000],[0.016066554,0.006734027,0.213158807,0.008333546,0.000000000],[0.007190689,0.253826760,0.001414827,0.023602420,0.000000000],[0.145923996,0.008497411,0.027748103,0.007260580,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Basepair C31 - G39 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.016039720,0.018018575,0.003913690,0.003913690,0.000000000],[0.622377978,0.045834624,0.003913690,0.003913690,0.000000000],[0.003913690,0.003913690,0.026291379,0.025055010,0.000000000],[0.161815261,0.013782538,0.003913690,0.043389083,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [8] // Basepair U32 - A38 bif 
HairpinNode  | Num Bases [5] | Left Index [3] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node U33:A37
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.020891365,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020891365,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.001392758,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.956824513,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U33
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.009433962,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.386792453,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.462264151,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.141509434,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C34
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.518867925,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.198113208,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.160377358,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.122641509,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C35
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.311320755,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.198113208,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.160377358,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.330188679,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C36
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.745283019,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.028301887,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.198113208,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.028301887,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A37
Insertion    | Location [1] | Length Distribution [0.979384363,0.020547465,0.000067211,0.000000960] | Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
