Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node
BasepairNode | Deletion Probability [0.0000000006078908] | Pair Probability [[0.009449844,0.018327229,0.010811779,0.196207841,0.000000000],[0.018327582,0.009443627,0.221270256,0.013276988,0.000000000],[0.010811792,0.221269599,0.002049334,0.024632695,0.000000000],[0.196208128,0.013276932,0.024633063,0.010003312,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000000000,0.012187690,0.975015235,0.012187690,0.000609385] | Right Letter Distribution [0.050000000,0.250000000,0.450000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Basepair C393 - G404 cWW 
BasepairNode | Deletion Probability [0.0000004444241139] | Pair Probability [[0.134031167,0.003199733,0.091534441,0.003199733,0.000000000],[0.339204095,0.023312121,0.003199733,0.003199733,0.000000000],[0.003199733,0.011171182,0.028773770,0.029494493,0.000000000],[0.032177534,0.003199733,0.014386067,0.276716730,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.253667482,0.736552567,0.009321516,0.000458435] | Right Letter Distribution [0.500000000,0.300000000,0.100000000,0.100000000,0.000000000] | Left Index [2] | Right Index [8] // Basepair C394 - A401 tWH 
BasepairNode | Deletion Probability [0.0000239574126029] | Pair Probability [[0.016740489,0.003704697,0.017387738,0.003704697,0.000000000],[0.037255609,0.298527778,0.003704697,0.003704697,0.000000000],[0.003704697,0.008880403,0.028173908,0.016477216,0.000000000],[0.443022142,0.057026375,0.021494207,0.036490649,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.995990040,0.003999960,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [7] // Basepair U395 - A399 tWH 
HairpinNode  | Num Bases [3] | Left Index [4] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node G396:G398
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.083333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.416666667,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.416666667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.083333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G396
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.750000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.083333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A397
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.083333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.750000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.083333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G398
