Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008641986,0.015101999,0.010021227,0.167541786,0.000000000],[0.036181325,0.009855924,0.290364393,0.012482375,0.000000000],[0.010143497,0.171090989,0.001947520,0.020434044,0.000000000],[0.172809267,0.011977354,0.052143724,0.009262590,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair C13 - G22 cWW 
BasepairNode | Deletion Probability [0.0000000000000011] | Pair Probability [[0.309286920,0.179597796,0.189796487,0.183457017,0.000000000],[0.014349823,0.011703948,0.001952518,0.011877933,0.000000000],[0.019403364,0.001952518,0.024868800,0.009287685,0.000000000],[0.022438637,0.007353082,0.005818941,0.006854529,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000253248,0.070909413,0.000253248,0.001025654,0.285663636,0.568541545,0.072986046,0.000354547,0.000012662] | Right Letter Distribution [0.038461538,0.130769231,0.438461538,0.392307692,0.000000000] | Left Index [2] | Right Index [4] // Basepair A14 - A21 cWS 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node G15:G15
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.218750000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.031250000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.718750000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.031250000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G15
