Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [18] // Initial node
BasepairNode | Deletion Probability [0.0000224390099112] | Pair Probability [[0.009374836,0.022228469,0.010012528,0.216037101,0.000000000],[0.017691617,0.009675113,0.196088410,0.010461402,0.000000000],[0.009993038,0.198630499,0.002061361,0.053740648,0.000000000],[0.197964449,0.011137350,0.023240462,0.011662716,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.989901010,0.009999000,0.000099990] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.989901010,0.009999000,0.000099990] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [18] // Basepair A16 - U38 cWW 
HairpinNode  | Num Bases [16] | Left Index [2] | Right Index [17] | Norm Constant [0.000344517752562] // Hairpin node G17:A37
Interaction  | Interacting Bases [2,5] | Pair Probability [[0.004966430,0.004966430,0.051077026,0.042074794,0.000000000],[0.004966430,0.052642128,0.004966430,0.017912101,0.000000000],[0.206503547,0.004966430,0.506544030,0.004966430,0.000000000],[0.017165095,0.004966430,0.015536138,0.055780127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G18 - G22 cWH 
Interaction  | Interacting Bases [3,6] | Pair Probability [[0.004966430,0.004966430,0.051077026,0.042074794,0.000000000],[0.004966430,0.052642128,0.004966430,0.017912101,0.000000000],[0.206503547,0.004966430,0.506544030,0.004966430,0.000000000],[0.017165095,0.004966430,0.015536138,0.055780127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G20 - G24 cWH 
Interaction  | Interacting Bases [4,7] | Pair Probability [[0.001506979,0.001506979,0.077492300,0.012766885,0.000000000],[0.001506979,0.015973364,0.007534897,0.005435124,0.000000000],[0.062660010,0.001506979,0.763390658,0.001506979,0.000000000],[0.005208458,0.001506979,0.023570892,0.016925537,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G21 - G25 cWH 
Interaction  | Interacting Bases [1,8] | Pair Probability [[0.044078439,0.004118062,0.330370325,0.004118062,0.000000000],[0.037959457,0.019394613,0.004118062,0.004118062,0.000000000],[0.004118062,0.007198246,0.041471646,0.421707145,0.000000000],[0.018315720,0.004118062,0.015949182,0.038846857,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G17 - U26 tWH 
Interaction  | Interacting Bases [5,9] | Pair Probability [[0.004966430,0.004966430,0.051077026,0.042074794,0.000000000],[0.004966430,0.052642128,0.004966430,0.017912101,0.000000000],[0.206503547,0.004966430,0.506544030,0.004966430,0.000000000],[0.017165095,0.004966430,0.015536138,0.055780127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G22 - G27 cWH 
Interaction  | Interacting Bases [6,10] | Pair Probability [[0.004966430,0.004966430,0.051077026,0.042074794,0.000000000],[0.004966430,0.052642128,0.004966430,0.017912101,0.000000000],[0.206503547,0.004966430,0.506544030,0.004966430,0.000000000],[0.017165095,0.004966430,0.015536138,0.055780127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G24 - G29 cWH 
Interaction  | Interacting Bases [7,11] | Pair Probability [[0.000256492,0.000256492,0.018465170,0.002172960,0.000000000],[0.000256492,0.002718711,0.001795445,0.000925073,0.000000000],[0.053324547,0.001282461,0.907623372,0.001282461,0.000000000],[0.000886494,0.000256492,0.005616565,0.002880774,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G25 - G30 cWH 
Interaction  | Interacting Bases [3,12] | Pair Probability [[0.004966430,0.004966430,0.206503547,0.017165095,0.000000000],[0.004966430,0.052642128,0.004966430,0.004966430,0.000000000],[0.051077026,0.004966430,0.506544030,0.015536138,0.000000000],[0.042074794,0.017912101,0.004966430,0.055780127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G20 - G32 cHW 
Interaction  | Interacting Bases [10,12] | Pair Probability [[0.004966430,0.004966430,0.051077026,0.042074794,0.000000000],[0.004966430,0.052642128,0.004966430,0.017912101,0.000000000],[0.206503547,0.004966430,0.506544030,0.004966430,0.000000000],[0.017165095,0.004966430,0.015536138,0.055780127,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G29 - G32 cWH 
Interaction  | Interacting Bases [4,13] | Pair Probability [[0.001279730,0.001279730,0.266055152,0.004423035,0.000000000],[0.001279730,0.013564619,0.006398652,0.001279730,0.000000000],[0.013161329,0.001279730,0.649766220,0.004003292,0.000000000],[0.010841669,0.004615521,0.006398652,0.014373206,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G21 - G33 cHW 
Interaction  | Interacting Bases [11,13] | Pair Probability [[0.000252674,0.000252674,0.012993057,0.002140611,0.000000000],[0.000252674,0.002678238,0.001263369,0.000911302,0.000000000],[0.073542989,0.001768716,0.894259015,0.001768716,0.000000000],[0.000873297,0.000252674,0.003952108,0.002837888,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G30 - G33 cWH 
Interaction  | Interacting Bases [1,14] | Pair Probability [[0.166586913,0.165788799,0.002070551,0.010011986,0.000000000],[0.193757756,0.009129710,0.002070551,0.008278035,0.000000000],[0.216956090,0.002070551,0.002070551,0.006790033,0.000000000],[0.179185112,0.008998530,0.016291903,0.009942930,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G17 - A34 tSW 
Interaction  | Interacting Bases [2,15] | Pair Probability [[0.000933318,0.000933318,0.271650781,0.003225757,0.000000000],[0.000933318,0.009892791,0.006533228,0.000933318,0.000000000],[0.009598669,0.000933318,0.663223761,0.002919634,0.000000000],[0.007906921,0.003366138,0.006533228,0.010482501,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G18 - G35 cHW 
Interaction  | Interacting Bases [9,15] | Pair Probability [[0.001117702,0.001117702,0.080464698,0.009468992,0.000000000],[0.001117702,0.011847185,0.007823915,0.004031144,0.000000000],[0.046473914,0.001117702,0.792292506,0.001117702,0.000000000],[0.003863029,0.001117702,0.024475008,0.012553396,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G27 - G35 cWH 
Interaction  | Interacting Bases [8,16] | Pair Probability [[0.009123784,0.017718471,0.010008206,0.198264936,0.000000000],[0.022262210,0.009929018,0.198931998,0.011154256,0.000000000],[0.010027726,0.196386049,0.002064490,0.023275738,0.000000000],[0.216349992,0.010477281,0.053822220,0.010203624,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction U26 - A37 cWW 
Insertion    | Location [2] | Length Distribution [0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000]// Insertion in Hairpin after nucleotide 3, position 2
Insertion    | Location [5] | Length Distribution [0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000]// Insertion in Hairpin after nucleotide 6, position 5
Insertion    | Location [9] | Length Distribution [0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000]// Insertion in Hairpin after nucleotide 10, position 9
Insertion    | Location [11] | Length Distribution [0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000]// Insertion in Hairpin after nucleotide 12, position 11
Insertion    | Location [15] | Length Distribution [0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000]// Insertion in Hairpin after nucleotide 16, position 15
