Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000001854263003] | Pair Probability [[0.007867381,0.016213076,0.008965314,0.162816310,0.000000000],[0.014038783,0.007737247,0.180598352,0.010785264,0.000000000],[0.008880998,0.359243783,0.001691352,0.021461615,0.000000000],[0.161051477,0.011130152,0.019198281,0.008320616,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.078400743,0.919735029,0.001775806,0.000088422] | Left Letter Distribution [0.942307692,0.019230769,0.019230769,0.019230769,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair G57 - C63 cWW 
BasepairNode | Deletion Probability [0.0000001235438727] | Pair Probability [[0.369808211,0.024438067,0.002118038,0.010112269,0.000000000],[0.155555172,0.015638532,0.006412983,0.008640273,0.000000000],[0.150715994,0.034589795,0.002118038,0.006985689,0.000000000],[0.177576486,0.011442242,0.013135709,0.010712501,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.001915525,0.996073173,0.001915525,0.000095776] | Left Letter Distribution [0.875000000,0.089285714,0.017857143,0.017857143,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair A59 - A62 tSW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node C61:C61
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.053571429,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.910714286,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.017857143,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.017857143,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C61
