Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008510759,0.016213523,0.009713729,0.167081391,0.000000000],[0.033964789,0.009661767,0.205335034,0.011535183,0.000000000],[0.009722232,0.222518473,0.001914516,0.021364893,0.000000000],[0.206368725,0.011356031,0.055505862,0.009233092,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair U38 - A45 cWW 
BasepairNode | Deletion Probability [0.0000000103657687] | Pair Probability [[0.058981802,0.044745470,0.002617483,0.272958464,0.000000000],[0.057336414,0.053616417,0.002617483,0.002617483,0.000000000],[0.065409088,0.002617483,0.191871936,0.037914146,0.000000000],[0.058546679,0.142914688,0.002617483,0.002617483,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.532198331,0.466088110,0.001636173,0.000077387] | Left Letter Distribution [0.833333333,0.055555556,0.055555556,0.055555556,0.000000000] | Right Length Distribution [0.003310710,0.993213044,0.003310710,0.000165536] | Right Letter Distribution [0.441176471,0.029411765,0.029411765,0.500000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A39 - U44 tSH 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node G41:C42
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.382352941,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.029411765,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.558823529,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.029411765,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G41
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.088235294,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.441176471,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.029411765,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.441176471,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C42
