Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [10] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.007973205,0.014297872,0.009166181,0.166200935,0.000000000],[0.016952398,0.008120479,0.355045051,0.011529880,0.000000000],[0.009269120,0.169782118,0.001747172,0.019619287,0.000000000],[0.168355563,0.011108817,0.022382520,0.008449403,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Basepair C11 - G22 cWW 
HairpinNode  | Num Bases [8] | Left Index [2] | Right Index [9] | Norm Constant [1.000000000000000] // Hairpin node A12:C21
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.937500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.020833333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A12
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.020833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.937500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U13
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.020833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.937500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U14
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.020833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.937500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.020833333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G15
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.937500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.020833333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A17
Interaction  | Interacting Bases [6,6] | Pair Probability [[0.020833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.937500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.020833333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C18
Interaction  | Interacting Bases [7,7] | Pair Probability [[0.020833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.854166667,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.104166667,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C20
Interaction  | Interacting Bases [8,8] | Pair Probability [[0.020833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.937500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.020833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.020833333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C21
Insertion    | Location [4] | Length Distribution [0.002262188,0.995362516,0.002262188,0.000113109] | Letter Distribution [0.020833333,0.937500000,0.020833333,0.020833333,0.000000000]// Insertion in Hairpin after nucleotide 5, position 4
Insertion    | Location [6] | Length Distribution [0.002262188,0.995362516,0.002262188,0.000113109] | Letter Distribution [0.020833333,0.104166667,0.020833333,0.854166667,0.000000000]// Insertion in Hairpin after nucleotide 7, position 6
