Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000224236049228] | Pair Probability [[0.006217140,0.011515551,0.007120956,0.153202475,0.000000000],[0.016047249,0.006500537,0.425779972,0.008793986,0.000000000],[0.007179775,0.168366823,0.001369291,0.016727175,0.000000000],[0.129088412,0.008579439,0.026827647,0.006683573,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.981552363,0.018388444,0.000058425,0.000000769] | Right Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair C28 - G33 cWW 
BasepairNode | Deletion Probability [0.0000001236119611] | Pair Probability [[0.025305767,0.024093246,0.002565235,0.102861040,0.000000000],[0.033171825,0.010783591,0.048444031,0.016113086,0.000000000],[0.055114786,0.007251468,0.002565235,0.011200931,0.000000000],[0.021867561,0.011259013,0.535130508,0.092272675,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.000875618,0.998204982,0.000875618,0.000043781] | Left Letter Distribution [0.177966102,0.059322034,0.008474576,0.754237288,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair U29 - G32 tSW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node C31:C31
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.042372881,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.855932203,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.059322034,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.042372881,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C31
