Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.009279644,0.015354855,0.010948571,0.152435898,0.000000000],[0.077670878,0.012881591,0.225126109,0.013371540,0.000000000],[0.011103183,0.155522414,0.002208500,0.020130439,0.000000000],[0.164484185,0.012723218,0.106585204,0.010173772,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C246 - G252 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.063273048,0.047240103,0.000714791,0.003451896,0.000000000],[0.073323537,0.058893068,0.000714791,0.000714791,0.000000000],[0.340447017,0.002896469,0.014762774,0.231348278,0.000000000],[0.096714976,0.064074881,0.000714791,0.000714791,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair G247 - A251 tSH 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G248:G250
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.045454545,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.681818182,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.227272727,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G248
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.001128668,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.996613995,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.001128668,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.001128668,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C249
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.227272727,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.681818182,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.045454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G250
