Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000193837924612] | Pair Probability [[0.002208359,0.004430489,0.002536452,0.101851840,0.000000000],[0.010485880,0.002593633,0.459404752,0.003052103,0.000000000],[0.002551719,0.209428729,0.000500747,0.010665162,0.000000000],[0.098563359,0.002988861,0.086292844,0.002445072,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.954011518,0.045974753,0.000013401,0.000000328] | Right Letter Distribution [0.027777778,0.250000000,0.416666667,0.305555556,0.000000000] | Left Index [1] | Right Index [6] // Basepair C15 - G20 cWW 
BasepairNode | Deletion Probability [0.0000199813582710] | Pair Probability [[0.013554273,0.022708191,0.002437551,0.001252213,0.000000000],[0.015526033,0.016002159,0.000137118,0.000137118,0.000000000],[0.769655066,0.003103959,0.033138324,0.066663201,0.000000000],[0.023506689,0.025012508,0.002434238,0.004731358,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.959741245,0.040245847,0.000012621,0.000000287] | Right Letter Distribution [0.156250000,0.343750000,0.093750000,0.406250000,0.000000000] | Left Index [2] | Right Index [5] // Basepair G16 - A19 tSH 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A17:A18
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.699430199,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.115384615,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.061253561,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.123931624,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A17
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.781625644,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.017458500,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.197767602,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.003148254,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A18
Insertion    | Location [1] | Length Distribution [0.976930480,0.023059074,0.000010282,0.000000164] | Letter Distribution [0.150000000,0.250000000,0.050000000,0.550000000,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
