Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.009129921,0.018089638,0.010373405,0.190542929,0.000000000],[0.017837979,0.009183620,0.213028027,0.012496319,0.000000000],[0.010342519,0.232983258,0.001985647,0.024109674,0.000000000],[0.200290726,0.012542138,0.027328996,0.009735204,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair U18 - A23 cWW 
HairpinNode  | Num Bases [3] | Left Index [2] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node U19:U22
Interaction  | Interacting Bases [2,3] | Pair Probability [[0.100002531,0.074061717,0.004072143,0.072379495,0.000000000],[0.054263395,0.081775889,0.000901642,0.072531229,0.000000000],[0.063504210,0.000901642,0.077464311,0.136893122,0.000000000],[0.073811815,0.073368713,0.000901642,0.113166507,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G21 - U22 cSH 
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.277777778,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.055555556,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.166666667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.500000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U19
Insertion    | Location [1] | Length Distribution [0.146977400,0.846630090,0.006090502,0.000302008] | Letter Distribution [0.187500000,0.062500000,0.562500000,0.187500000,0.000000000]// Insertion in Hairpin after nucleotide 2, position 1
