Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000083097415128] | Pair Probability [[0.008796437,0.015898754,0.010068450,0.184103077,0.000000000],[0.018965651,0.009017378,0.274483271,0.012533080,0.000000000],[0.010172994,0.187505233,0.001933553,0.021720751,0.000000000],[0.196096144,0.012050625,0.027283683,0.009370918,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.894854586,0.004971414,0.099652001,0.000497141,0.000024857] | Right Letter Distribution [0.125000000,0.125000000,0.375000000,0.375000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C37 - G43 cWW 
HairpinNode  | Num Bases [4] | Left Index [2] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node A38:C42
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.682692308,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.009615385,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.298076923,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.009615385,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A38
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.104166667,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.006944444,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.006944444,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.881944444,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U39
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.125000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.625000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.041666667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.208333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C41
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.105769231,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.778846154,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.009615385,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.105769231,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C42
Insertion    | Location [2] | Length Distribution [0.399702455,0.597074138,0.003074634,0.000148773] | Letter Distribution [0.062500000,0.187500000,0.562500000,0.187500000,0.000000000]// Insertion in Hairpin after nucleotide 3, position 2
