Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000000001209991] | Pair Probability [[0.007680168,0.014837498,0.008697580,0.185395242,0.000000000],[0.015826807,0.007835289,0.284788526,0.010507956,0.000000000],[0.008735922,0.203585037,0.001682842,0.022249541,0.000000000],[0.186198875,0.010351038,0.023282983,0.008344694,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000589392,0.307147120,0.345899671,0.268866083,0.000548872,0.000099460,0.038384181,0.038384181,0.000077358,0.000003684] | Right Letter Distribution [0.217741935,0.040322581,0.282258065,0.459677419,0.000000000] | Left Index [1] | Right Index [4] // Basepair C328 - G334 cWW 
HairpinNode  | Num Bases [2] | Left Index [2] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node A329:U330
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.589285714,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.125000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.160714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.125000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A329
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.125000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.303571429,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.196428571,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.375000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U330
Insertion    | Location [1] | Length Distribution [0.576030918,0.384708997,0.039145763,0.000110633,0.000003688] | Letter Distribution [0.250000000,0.035714286,0.035714286,0.678571429,0.000000000]// Insertion in Hairpin after nucleotide 2, position 1
