Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000001163511744] | Pair Probability [[0.009353012,0.017115225,0.010782073,0.165404832,0.000000000],[0.064326949,0.012255484,0.178046090,0.012586828,0.000000000],[0.010818665,0.186779082,0.002191230,0.022094170,0.000000000],[0.194304352,0.012235239,0.091370254,0.010336514,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.661815186,0.335026775,0.003020733,0.000137306] | Left Letter Distribution [0.625000000,0.125000000,0.125000000,0.125000000,0.000000000] | Right Length Distribution [0.334109270,0.660002739,0.005614131,0.000273860] | Right Letter Distribution [0.416666667,0.083333333,0.083333333,0.416666667,0.000000000] | Left Index [1] | Right Index [4] // Basepair G931 - C939 cWW 
HairpinNode  | Num Bases [2] | Left Index [2] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node C932:A937
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.062500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.562500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.187500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.187500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C932
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.562500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.187500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.062500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.187500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A937
Insertion    | Location [1] | Length Distribution [0.168193628,0.493641460,0.004170655,0.002939970,0.328182688,0.002734856,0.000136743] | Letter Distribution [0.038461538,0.269230769,0.269230769,0.423076923,0.000000000]// Insertion in Hairpin after nucleotide 2, position 1
