Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node
BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.009733692,0.020271796,0.011084078,0.201320753,0.000000000],[0.017097495,0.009544863,0.203026637,0.013284001,0.000000000],[0.010960983,0.228535864,0.002089280,0.026765173,0.000000000],[0.198744233,0.013787510,0.023460879,0.010292763,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Basepair G78 - C88 cWW 
BasepairNode | Deletion Probability [0.0000001182498160] | Pair Probability [[0.019182405,0.148655525,0.180909616,0.020809685,0.000000000],[0.015872069,0.014270336,0.019891162,0.030121973,0.000000000],[0.197677357,0.019976682,0.003937382,0.034983187,0.000000000],[0.019305959,0.029541285,0.016708444,0.228156930,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.023781213,0.951248514,0.023781213,0.001189061] | Right Letter Distribution [0.375000000,0.125000000,0.375000000,0.125000000,0.000000000] | Left Index [2] | Right Index [8] // Basepair G79 - A87 cWW 
BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.199980210,0.003885421,0.169238699,0.003885421,0.000000000],[0.036366779,0.175081720,0.003885421,0.003885421,0.000000000],[0.003885421,0.009458368,0.082252671,0.028591197,0.000000000],[0.225726841,0.003885421,0.020718805,0.029272186,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [7] // Basepair A80 - A85 tWH 
BasepairNode | Deletion Probability [0.0000000005912491] | Pair Probability [[0.017068734,0.003777338,0.017728674,0.003777338,0.000000000],[0.037986112,0.304381264,0.003777338,0.003777338,0.000000000],[0.003777338,0.009054529,0.028726337,0.016800299,0.000000000],[0.486468209,0.003777338,0.021915662,0.037206152,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.011890606,0.475624257,0.023781213,0.476218787,0.011890606,0.000594530] | Left Letter Distribution [0.416666667,0.416666667,0.083333333,0.083333333,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [6] // Basepair U81 - A84 tWH 
HairpinNode  | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node A83:A83
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.875000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.041666667,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.041666667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.041666667,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A83
