Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.003611448,0.052649480,0.004112476,0.074695145,0.000000000],[0.006343607,0.024789716,0.075328071,0.004928704,0.000000000],[0.004066805,0.616697523,0.000775176,0.009930563,0.000000000],[0.073739190,0.035808631,0.008704586,0.003818878,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair G2027 - C2036 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.050000000,0.050000000,0.650000000,0.250000000,0.000000000] | Position [2] | Left Index [2] | Right Index [6] // Fixed node on right for 5J7L|1|DA|G|2032
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // New Initial node after Fixed node
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.150000000,0.050000000,0.350000000,0.450000000,0.000000000] | Position [2] | Left Index [2] | Right Index [5] // Fixed node on right for 5J7L|1|DA|A|2031
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [4] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000000000059760] | Pair Probability [[0.058028385,0.004002498,0.036753177,0.004002498,0.000000000],[0.038932436,0.230291093,0.004002498,0.004002498,0.000000000],[0.004002498,0.008544631,0.163430289,0.024768382,0.000000000],[0.354373440,0.004002498,0.025675301,0.035187881,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000000000,0.000771367,0.128818266,0.864702252,0.005438136,0.000269978] | Right Letter Distribution [0.500000000,0.180000000,0.300000000,0.020000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair U2028 - A2033 tWH 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node G2029:G2029
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.129310345,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.008620690,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.732758621,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.129310345,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G2029
