Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000036211996515] | Pair Probability [[0.008499787,0.016082502,0.009648129,0.167242462,0.000000000],[0.036046458,0.009858622,0.196525230,0.011299980,0.000000000],[0.009667655,0.204373191,0.001929949,0.021116849,0.000000000],[0.225943325,0.010988494,0.061468053,0.009309314,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.711910021,0.286896692,0.001142509,0.000050778] | Left Letter Distribution [0.083333333,0.416666667,0.083333333,0.416666667,0.000000000] | Right Length Distribution [0.925121325,0.074446731,0.000419239,0.000012704] | Right Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Left Index [1] | Right Index [6] // Basepair U3040 - A3045 cWW 
HairpinNode  | Num Bases [4] | Left Index [2] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G3041:C3044
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.218750000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.093750000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.656250000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.031250000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G3041
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.343750000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.531250000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.093750000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.031250000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A3042
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.093750000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.468750000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.156250000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.281250000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U3043
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.468750000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.218750000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.218750000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.093750000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C3044
