Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008763342,0.015714778,0.010074541,0.182671298,0.000000000],[0.018632366,0.008925211,0.291130597,0.012672481,0.000000000],[0.010187681,0.186607373,0.001920315,0.021563540,0.000000000],[0.185039448,0.012209691,0.024600607,0.009286731,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C13 - G22 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.301170538,0.185870650,0.196425553,0.189864663,0.000000000],[0.014851023,0.012112735,0.002020714,0.012292797,0.000000000],[0.020081070,0.002020714,0.025737398,0.009612078,0.000000000],[0.007214040,0.007609905,0.006022181,0.007093939,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair A14 - A21 cWS 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G15:U20
Interaction  | Interacting Bases [2,3] | Pair Probability [[0.071283328,0.072634441,0.003993667,0.070984637,0.000000000],[0.053217661,0.080199949,0.000884266,0.071133447,0.000000000],[0.062280392,0.000884266,0.075971462,0.207110458,0.000000000],[0.072389355,0.071954791,0.000884266,0.084193615,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G19 - U20 cSH 
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.192307692,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.038461538,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.730769231,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.038461538,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G15
Insertion    | Location [1] | Length Distribution [0.000000000,0.001637633,0.363145074,0.632126261,0.002947739,0.000143293] | Letter Distribution [0.016129032,0.209677419,0.370967742,0.403225806,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
Insertion    | Location [2] | Length Distribution [0.904811823,0.094550986,0.000616637,0.000020555] | Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000]// Insertion in Hairpin after nucleotide 4, position 2
