Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000061358665091] | Pair Probability [[0.008066330,0.015469919,0.009260495,0.170670750,0.000000000],[0.035887225,0.009303818,0.222677048,0.011068784,0.000000000],[0.009273472,0.239075942,0.001815365,0.022145087,0.000000000],[0.165591251,0.011031447,0.059862661,0.008800407,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.737595604,0.261730513,0.000645608,0.000028275] | Right Letter Distribution [0.062500000,0.062500000,0.437500000,0.437500000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C1294 - G1301 cWW 
BasepairNode | Deletion Probability [0.0000007723675157] | Pair Probability [[0.011449859,0.197962169,0.010491671,0.090384015,0.000000000],[0.042730708,0.015397374,0.016524302,0.011534441,0.000000000],[0.038985482,0.016446721,0.003188189,0.067460065,0.000000000],[0.031421182,0.012319220,0.047270663,0.386433940,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.520859338,0.391139080,0.001092778,0.086710974,0.000188410,0.000009420] | Right Letter Distribution [0.382352941,0.029411765,0.323529412,0.264705882,0.000000000] | Left Index [2] | Right Index [6] // Basepair U1295 - U1300 cWW 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node U1296:A1298
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.020000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.060000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.900000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U1296
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.500000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.100000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.260000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.140000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A1297
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.780000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.140000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.060000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A1298
Insertion    | Location [1] | Length Distribution [0.780835411,0.175226102,0.043820664,0.000113110,0.000004713] | Letter Distribution [0.312500000,0.187500000,0.062500000,0.437500000,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
Insertion    | Location [2] | Length Distribution [0.824271904,0.175242620,0.000466622,0.000018853] | Letter Distribution [0.416666667,0.083333333,0.416666667,0.083333333,0.000000000]// Insertion in Hairpin after nucleotide 4, position 2
