Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node
BasepairNode | Deletion Probability [0.0000174430812709] | Pair Probability [[0.008353585,0.016940947,0.009391314,0.202101094,0.000000000],[0.016520558,0.008476384,0.221136226,0.011091595,0.000000000],[0.009383500,0.230218785,0.001824372,0.026580370,0.000000000],[0.192895631,0.011155907,0.024744258,0.009185475,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.934446650,0.065203005,0.000340613,0.000009732] | Right Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Left Index [1] | Right Index [8] // Basepair G712 - C719 cWW 
BasepairNode | Deletion Probability [0.0000125283626446] | Pair Probability [[0.081226792,0.082728655,0.001605616,0.056569188,0.000000000],[0.079151969,0.080275490,0.001605616,0.001605616,0.000000000],[0.172043477,0.001605616,0.079807645,0.103057189,0.000000000],[0.107394601,0.148111299,0.001605616,0.001605616,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.872188059,0.127267066,0.000525414,0.000019460] | Right Letter Distribution [0.125000000,0.125000000,0.625000000,0.125000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair G713 - A718 tSH 
HairpinNode  | Num Bases [4] | Left Index [3] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node U714:C717
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.004385965,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.065789474,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.065789474,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.864035088,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U714
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.472222222,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.361111111,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.083333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A715
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.750000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.027777778,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.194444444,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.027777778,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A716
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.361111111,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.416666667,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.138888889,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C717
Insertion    | Location [3] | Length Distribution [0.747743542,0.251322751,0.000894802,0.000038904] | Letter Distribution [0.250000000,0.083333333,0.416666667,0.250000000,0.000000000]// Insertion in Hairpin after nucleotide 5, position 3
