Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node
BasepairNode | Deletion Probability [0.0000003956735078] | Pair Probability [[0.009108592,0.018969937,0.010372256,0.188391897,0.000000000],[0.015999490,0.008931890,0.189988229,0.012430900,0.000000000],[0.010257066,0.278079433,0.001955106,0.025046309,0.000000000],[0.185980842,0.012902074,0.021954217,0.009631760,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.224265942,0.771181521,0.004338660,0.000213878] | Right Letter Distribution [0.055555556,0.055555556,0.833333333,0.055555556,0.000000000] | Left Index [1] | Right Index [8] // Basepair G330 - C338 cWW 
BasepairNode | Deletion Probability [0.0000132986348294] | Pair Probability [[0.301754209,0.002857512,0.281952459,0.002857512,0.000000000],[0.044060119,0.012417181,0.002857512,0.002857512,0.000000000],[0.002857512,0.007453457,0.140191373,0.124724163,0.000000000],[0.039246899,0.002857512,0.013413100,0.017641969,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.883805084,0.115305590,0.000858659,0.000030666] | Right Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A331 - G336 tWH 
HairpinNode  | Num Bases [4] | Left Index [3] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node U332:U335
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.007692308,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.007692308,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.007692308,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.976923077,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U332
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.772727273,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.136363636,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.045454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A333
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.500000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.409090909,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.045454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G334
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.318181818,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.227272727,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.045454545,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.409090909,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U335
Insertion    | Location [2] | Length Distribution [0.883805084,0.115305590,0.000858659,0.000030666] | Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000]// Insertion in Hairpin after nucleotide 4, position 2
