Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
BasepairNode | Deletion Probability [0.0000027871092024] | Pair Probability [[0.010428470,0.073494637,0.010917675,0.192529849,0.000000000],[0.016734410,0.009948887,0.172095461,0.012084042,0.000000000],[0.010850588,0.174070210,0.002235399,0.102994290,0.000000000],[0.161011617,0.012602435,0.021498745,0.016503284,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.790123457,0.009876543,0.197925926,0.001975309,0.000098765] | Right Letter Distribution [0.375000000,0.375000000,0.125000000,0.125000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair A69 - U76 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.357142857,0.071428571,0.500000000,0.071428571,0.000000000] | Position [1] | Left Index [2] | Right Index [6] // Fixed node on left for 4P5J|1|A|G|70
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000003483978778] | Pair Probability [[0.071088788,0.070547281,0.068528632,0.071075143,0.000000000],[0.127964412,0.072101920,0.003321526,0.064469291,0.000000000],[0.095188475,0.003265824,0.006914785,0.075458121,0.000000000],[0.070119471,0.067419472,0.066555314,0.065981545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.204221895,0.787432499,0.007952872,0.000392734] | Right Letter Distribution [0.083333333,0.583333333,0.083333333,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair G71 - A75 cSS 
HairpinNode  | Num Bases [2] | Left Index [4] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G72:U73
Interaction  | Interacting Bases [1,2] | Pair Probability [[0.043308504,0.045113071,0.005934577,0.106583667,0.000000000],[0.035053997,0.100290019,0.001276476,0.125755463,0.000000000],[0.121086490,0.001276476,0.049794915,0.126793157,0.000000000],[0.045010180,0.047624281,0.001276476,0.143822251,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G72 - U73 cSH 
Insertion    | Location [1] | Length Distribution [0.790123457,0.009876543,0.197925926,0.001975309,0.000098765] | Letter Distribution [0.375000000,0.375000000,0.125000000,0.125000000,0.000000000]// Insertion in Hairpin after nucleotide 4, position 1
