Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node
ClusterNode  | Deletion Probability [0.000000000000000077834144636918971208239992618431520099098200] | Num Left Bases [2] | Num Right Bases [3] | Left Index [1] | Right Index [7] | Norm Constant [0.250977124753292] // Cluster node 8P9A|1|AR|A|876:8P9A|1|AR|C|877 and 8P9A|1|AR|C|881:8P9A|1|AR|U|885
Interaction  | Interacting Bases [2,4] | Pair Probability [[0.156393807,0.153327837,0.001913240,0.009327635,0.000000000],[0.213188418,0.008588135,0.001913240,0.007713853,0.000000000],[0.237914047,0.001913240,0.001913240,0.006245988,0.000000000],[0.167885785,0.008476387,0.014022145,0.009263002,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Cluster Interaction 8P9A|1|AR|C|877 - 8P9A|1|AR|A|882 tSW 
Interaction  | Interacting Bases [1,5] | Pair Probability [[0.008843513,0.018252218,0.009751492,0.208978640,0.000000000],[0.018866880,0.009248518,0.198812373,0.011020769,0.000000000],[0.009754135,0.198467838,0.001960210,0.030750014,0.000000000],[0.219431451,0.010929189,0.034881686,0.010051076,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Cluster Interaction 8P9A|1|AR|A|876 - 8P9A|1|AR|U|885 cWW 
Interaction  | Interacting Bases [3,5] | Pair Probability [[0.117219757,0.094553977,0.106037736,0.095431809,0.000000000],[0.153777412,0.153338228,0.002337805,0.164536746,0.000000000],[0.022423066,0.002337805,0.026365274,0.010167450,0.000000000],[0.012477862,0.017945698,0.009389952,0.011659423,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Cluster Interaction 8P9A|1|AR|C|881 - 8P9A|1|AR|U|885 cWS 
Insertion    | Location [4] | Length Distribution [0.000000000,0.007039775,0.985568462,0.007039775,0.000351989] | Letter Distribution [0.781250000,0.093750000,0.031250000,0.093750000,0.000000000]// Insertion after nucleotide 6, position 4 in cluster node
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // New Initial node after Cluster
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node G878:G880
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.166666667,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.277777778,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.277777778,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.277777778,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G878
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.148648649,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.013513514,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.824324324,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.013513514,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G880
Insertion    | Location [1] | Length Distribution [0.007039775,0.985568462,0.007039775,0.000351989] | Letter Distribution [0.055555556,0.055555556,0.055555556,0.833333333,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
