Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000001232656381] | Pair Probability [[0.008976824,0.016730854,0.010230537,0.197633502,0.000000000],[0.018824307,0.009157494,0.260432179,0.012619351,0.000000000],[0.010330006,0.191036585,0.001967919,0.025674394,0.000000000],[0.189548681,0.012282179,0.024840230,0.009714959,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.006170935,0.987349583,0.006170935,0.000308547] | Right Letter Distribution [0.750000000,0.050000000,0.050000000,0.150000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair C1612 - G1619 cWW 
HairpinNode  | Num Bases [3] | Left Index [2] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node G1613:C1617
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.011904762,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.011904762,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.964285714,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.011904762,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G1613
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.350000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.550000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.050000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.050000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C1615
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.129310345,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.853448276,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.008620690,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.008620690,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C1617
Insertion    | Location [1] | Length Distribution [0.005399568,0.864702252,0.128818266,0.001041345,0.000038568] | Letter Distribution [0.500000000,0.318181818,0.136363636,0.045454545,0.000000000]// Insertion in Hairpin after nucleotide 2, position 1
Insertion    | Location [2] | Length Distribution [0.128917709,0.865369770,0.005442334,0.000270187] | Letter Distribution [0.611111111,0.055555556,0.277777778,0.055555556,0.000000000]// Insertion in Hairpin after nucleotide 3, position 2
