Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [11] // Initial node
BasepairNode | Deletion Probability [0.0000002372133371] | Pair Probability [[0.009612241,0.015047219,0.011528143,0.130542356,0.000000000],[0.119117636,0.015632430,0.184650278,0.013819064,0.000000000],[0.011711521,0.133017859,0.002404463,0.019047917,0.000000000],[0.149388768,0.013041896,0.160672982,0.010765227,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.128917709,0.865369770,0.005442334,0.000270187] | Right Letter Distribution [0.055555556,0.833333333,0.055555556,0.055555556,0.000000000] | Left Index [1] | Right Index [11] // Basepair C2291 - G2303 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.111060251,0.088358762,0.001436312,0.007407855,0.000000000],[0.118617396,0.098201096,0.001436312,0.001436312,0.000000000],[0.129399722,0.001436312,0.009313408,0.119251266,0.000000000],[0.192360827,0.117411548,0.001436312,0.001436312,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [10] // Basepair U2292 - A2301 tSH 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.384933761,0.258062085,0.015362931,0.015689024,0.000000000],[0.097214135,0.001133009,0.113152516,0.009943605,0.000000000],[0.003487446,0.060347814,0.001779186,0.000708579,0.000000000],[0.004663108,0.032105642,0.000708579,0.000708579,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [9] // Basepair A2293 - A2300 tHH 
BasepairNode | Deletion Probability [0.0000002372133371] | Pair Probability [[0.016021688,0.039591410,0.003351574,0.399972264,0.000000000],[0.015733335,0.058405784,0.013957679,0.038710035,0.000000000],[0.003351574,0.016613309,0.016041319,0.268476754,0.000000000],[0.038286769,0.032140264,0.016522447,0.022823794,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.128917709,0.865369770,0.005442334,0.000270187] | Left Letter Distribution [0.833333333,0.055555556,0.055555556,0.055555556,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [8] // Basepair A2294 - U2299 tWW 
HairpinNode  | Num Bases [3] | Left Index [5] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node A2296:G2298
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.450000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.350000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.150000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.050000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A2296
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.250000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.050000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.550000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.150000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G2297
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.450000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.050000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.450000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.050000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G2298
