Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node
BasepairNode | Deletion Probability [0.0000026904167381] | Pair Probability [[0.008215789,0.014325884,0.009660735,0.130830449,0.000000000],[0.073974265,0.011702188,0.199697140,0.011478144,0.000000000],[0.009726346,0.198448680,0.001965888,0.018370220,0.000000000],[0.157574942,0.011153516,0.133803005,0.009072811,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.623842412,0.333731457,0.042300635,0.000121168,0.000004327] | Left Letter Distribution [0.125000000,0.208333333,0.375000000,0.291666667,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair U44 - A51 cWW 
HairpinNode  | Num Bases [6] | Left Index [2] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node U45:G50
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.211538462,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.211538462,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.326923077,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.250000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U45
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.250000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.442307692,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.019230769,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.288461538,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A46
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.519230769,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.173076923,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.096153846,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.211538462,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C47
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.365384615,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.211538462,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.211538462,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.211538462,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U48
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.134615385,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.288461538,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.365384615,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.211538462,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U49
Interaction  | Interacting Bases [6,6] | Pair Probability [[0.250000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.096153846,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.519230769,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.134615385,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G50
Insertion    | Location [3] | Length Distribution [0.956245345,0.043564116,0.000186208,0.000004330] | Letter Distribution [0.166666667,0.500000000,0.166666667,0.166666667,0.000000000]// Insertion in Hairpin after nucleotide 4, position 3
