| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 4 I | 8 5 4 | 9 5 I | 10 6 | 11 5 I | 12 5 5 | 13 4 I | 14 4 6 | 15 3 I | 16 3 7 | 17 2 I | 18 2 8 | 19 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_09705.15_Instance_1 IL_09705.15,IL_5J7L_333,C2350_G2367 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_1 IL_09705.155J7L_C_2350_G_2367 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_2 IL_09705.15,IL_4WF9_087,C2377_G2394 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_2 IL_09705.154WF9_C_2377_G_2394 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_3 IL_09705.15,IL_9DFE_089,C2350_G2367 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_3 IL_09705.159DFE_C_2350_G_2367 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_4 IL_09705.15,IL_7A0S_081,C2329_G2346 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_4 IL_09705.157A0S_C_2329_G_2346 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_5 IL_09705.15,IL_4XWF_001,U7_G39 | U | G | A | C | G | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_5 IL_09705.154XWF_U7_G39 | U | G | A | C | * | G | G | A | G | true | 90 | 0 | 0 | 0.95 | ||||||||||
| IL_09705.15_Instance_6 IL_09705.15,IL_5AOX_003,A105_U61 | A | G | A | C | G | G | A | U | ||||||||||||||||
| IL_09705.15_Sequence_6 IL_09705.155AOX_A105_U61 | A | G | A | C | * | G | G | A | U | true | 95 | 0 | 0 | 0.50 | ||||||||||
| IL_09705.15_Instance_7 IL_09705.15,IL_5BTP_004,U12_G44 | U | G | A | C | G | A | A | G | ||||||||||||||||
| IL_09705.15_Sequence_7 IL_09705.155BTP_U12_G44 | U | G | A | C | * | G | A | A | G | true | 84 | 0 | 0 | 1.53 | ||||||||||
| IL_09705.15_Instance_8 IL_09705.15,IL_4LFB_060,U1481_G1419 | U | G | A | C | G | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_8 IL_09705.154LFB_U_1481_G_1419 | U | G | A | C | * | G | G | A | G | true | 90 | 0 | 0 | 0.95 | ||||||||||
| IL_09705.15_Instance_9 IL_09705.15,IL_4WF9_016,U597_G584 | U | G | A | U | A | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_9 IL_09705.154WF9_U597_G584 | U | G | A | U | * | A | G | A | G | true | 86 | 0 | 0 | 1.35 | ||||||||||
| IL_09705.15_Instance_10 IL_09705.15,IL_9BZC_001,U9_G39 | U | G | A | C | G | A | A | G | ||||||||||||||||
| IL_09705.15_Sequence_10 IL_09705.159BZC_U9_G39 | U | G | A | C | * | G | A | A | G | true | 84 | 0 | 0 | 1.53 | ||||||||||
| IL_09705.15_Instance_11 IL_09705.15,IL_1SA9_002,C211_G206 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_11 IL_09705.151SA9_C211_G206 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_12 IL_09705.15,IL_3D0U_002,C67_G19 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_12 IL_09705.153D0U_C67_G19 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_13 IL_09705.15,IL_8CRE_402,C184_G197 | C | G | A | C | G | A | A | G | ||||||||||||||||
| IL_09705.15_Sequence_13 IL_09705.158CRE_C184_G197 | C | G | A | C | * | G | A | A | G | true | 93 | 0 | 0 | 0.64 | ||||||||||
| IL_09705.15_Instance_14 IL_09705.15,IL_1SAQ_005,C203_G214 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_14 IL_09705.151SAQ_C203_G214 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_15 IL_09705.15,IL_4KZD_002,U71_A14 | U | A | A | C | G | A | A | A | ||||||||||||||||
| IL_09705.15_Sequence_15 IL_09705.154KZD_U71_A14 | U | A | A | C | * | G | A | A | A | true | 76 | 0 | 0 | 2.29 | ||||||||||
| IL_09705.15_Instance_16 IL_09705.15,IL_5J7L_256,U554_G539 | U | G | A | C | G | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_16 IL_09705.155J7L_U554_G539 | U | G | A | C | * | G | G | A | G | true | 90 | 0 | 0 | 0.95 | ||||||||||
| IL_09705.15_Instance_17 IL_09705.15,IL_4ZNP_002,G9_C40 | G | G | A | C | G | G | A | C | ||||||||||||||||
| IL_09705.15_Sequence_17 IL_09705.154ZNP_G9_C40 | G | G | A | C | * | G | G | A | C | true | 94 | 0 | 0 | 0.59 | ||||||||||
| IL_09705.15_Instance_18 IL_09705.15,IL_8P9A_385,C186_G199 | C | G | A | C | G | A | A | G | ||||||||||||||||
| IL_09705.15_Sequence_18 IL_09705.158P9A_C186_G199 | C | G | A | C | * | G | A | A | G | true | 93 | 0 | 0 | 0.64 | ||||||||||
| IL_09705.15_Instance_19 IL_09705.15,IL_6YL5_010,C12_G27 | C | A | A | C | G | G | C | G | ||||||||||||||||
| IL_09705.15_Sequence_19 IL_09705.156YL5_C12_G27 | C | A | A | C | * | G | G | C | G | true | 87 | 0 | 0 | 1.20 | ||||||||||
| IL_09705.15_Instance_20 IL_09705.15,IL_8CRE_471,C1640_G1734 | C | G | A | U | A | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_20 IL_09705.158CRE_C_1640_G_1734 | C | G | A | U | * | A | G | A | G | true | 95 | 0 | 0 | 0.46 | ||||||||||
| IL_09705.15_Instance_21 IL_09705.15,IL_4UYK_005,C121_G80 | C | C | A | C | G | G | C | G | ||||||||||||||||
| IL_09705.15_Sequence_21 IL_09705.154UYK_C121_G80 | C | C | A | C | * | G | G | C | G | true | 87 | 0 | 0 | 1.21 | ||||||||||
| IL_09705.15_Instance_22 IL_09705.15,IL_6YML_002,C12_G27 | C | A | A | C | G | G | C | G | ||||||||||||||||
| IL_09705.15_Sequence_22 IL_09705.156YML_C12_G27 | C | A | A | C | * | G | G | C | G | true | 87 | 0 | 0 | 1.20 | ||||||||||
| IL_09705.15_Instance_23 IL_09705.15,IL_8P9A_457,C1653_G1747 | C | G | A | U | A | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_23 IL_09705.158P9A_C_1653_G_1747 | C | G | A | U | * | A | G | A | G | true | 95 | 0 | 0 | 0.46 | ||||||||||
| IL_09705.15_Instance_24 IL_09705.15,IL_8CRE_474,U1656_A1719 | U | G | A | G | C | A | A | A | ||||||||||||||||
| IL_09705.15_Sequence_24 IL_09705.158CRE_U_1656_A_1719 | U | G | A | G | * | C | A | A | A | true | 89 | 0 | 0 | 1.08 | ||||||||||
| IL_09705.15_Instance_25 IL_09705.15,IL_8T29_001,G80_C11 | G | A | A | G | C | G | A | C | ||||||||||||||||
| IL_09705.15_Sequence_25 IL_09705.158T29_G80_C11 | G | A | A | G | * | C | G | A | C | true | 82 | 0 | 0 | 1.69 | ||||||||||
| IL_09705.15_Instance_26 IL_09705.15,IL_8P9A_460,U1669_A1732 | U | G | A | G | C | A | A | A | ||||||||||||||||
| IL_09705.15_Sequence_26 IL_09705.158P9A_U_1669_A_1732 | U | G | A | G | * | C | A | A | A | true | 89 | 0 | 0 | 1.08 | ||||||||||
| IL_09705.15_Instance_27 IL_09705.15,IL_4LFB_067,C1259_G1276 | C | C | A | C | G | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_27 IL_09705.154LFB_C_1259_G_1276 | C | C | A | C | * | G | G | A | G | true | 86 | 0 | 0 | 1.29 | ||||||||||
| IL_09705.15_Instance_28 IL_09705.15,IL_8P9A_342,A3139_U3007 | A | G | A | AC | G | C | A | A | U | |||||||||||||||
| IL_09705.15_Sequence_28 IL_09705.158P9A_A_3139_U_3007 | A | G | A | AC | G | * | C | A | A | U | true | 42 | 0 | 0 | 5.55 | |||||||||
| IL_09705.15_Instance_29 IL_09705.15,IL_8CRE_123,A3111_U2979 | A | G | A | AC | G | C | A | A | U | |||||||||||||||
| IL_09705.15_Sequence_29 IL_09705.158CRE_A_3111_U_2979 | A | G | A | AC | G | * | C | A | A | U | true | 42 | 0 | 0 | 5.55 | |||||||||
| IL_09705.15_Instance_30 IL_09705.15,IL_4V9F_100,C2873_G2884 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_30 IL_09705.154V9F_C_2873_G_2884 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_09705.15_Instance_31 IL_09705.15,IL_5J7L_062,G1416_C1484 | G | G | A | G | U | G | A | C | ||||||||||||||||
| IL_09705.15_Sequence_31 IL_09705.155J7L_G_1416_C_1484 | G | G | A | G | * | U | G | A | C | true | 72 | 0 | 0 | 2.63 | ||||||||||
| IL_09705.15_Instance_32 IL_09705.15,IL_8CRE_141,A3307_U3328 | A | G | A | G | C | G | A | U | ||||||||||||||||
| IL_09705.15_Sequence_32 IL_09705.158CRE_A_3307_U_3328 | A | G | A | G | * | C | G | A | U | true | 95 | 0 | 0 | 0.44 | ||||||||||
| IL_09705.15_Instance_33 IL_09705.15,IL_8P9A_362,A3342_U3363 | A | G | A | G | C | G | A | U | ||||||||||||||||
| IL_09705.15_Sequence_33 IL_09705.158P9A_A_3342_U_3363 | A | G | A | G | * | C | G | A | U | true | 95 | 0 | 0 | 0.44 | ||||||||||
| IL_09705.15_Instance_34 IL_09705.15,IL_3DIL_002,C70_G22 | C | G | A | G | C | G | A | G | ||||||||||||||||
| IL_09705.15_Sequence_34 IL_09705.153DIL_C70_G22 | C | G | A | G | * | C | G | A | G | true | 100 | 0 | 0 | 0.00 |
1 2 s35 1 8 cWW 2 6 s33 2 7 tSH 2 8 s55 3 4 s35 3 6 tHS 3 7 s55 4 5 cWW 4 6 s55 5 6 s35 7 8 s35 7 2 6BR 3 6 6BRJAR3D SCFG/MRF model for IL_09705.15:
Character Definition | A,C,G,U,* // Identity and order of characters in matrices InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.007439942,0.013390961,0.008610424,0.167535108,0.000000000],[0.052946482,0.009825040,0.260691692,0.010196118,0.000000000],[0.008690141,0.153773955,0.001745576,0.020204431,0.000000000],[0.159627145,0.009886146,0.107107371,0.008329468,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair C2350 - G2367 cWW BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.099967529,0.101625715,0.001080307,0.005167024,0.000000000],[0.092984731,0.100176249,0.001080307,0.001080307,0.000000000],[0.318505337,0.001080307,0.005635680,0.077712322,0.000000000],[0.099053200,0.092690371,0.001080307,0.001080307,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair G2351 - A2366 tSH BasepairNode | Deletion Probability [0.0000131428944851] | Pair Probability [[0.166207335,0.098315364,0.298388333,0.102202392,0.000000000],[0.068377635,0.079090719,0.001111336,0.098160589,0.000000000],[0.001111336,0.001111336,0.006903637,0.001111336,0.000000000],[0.005774001,0.001111336,0.069911977,0.001111336,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.939644265,0.001468194,0.058796858,0.000086364,0.000004318] | Left Letter Distribution [0.416666667,0.416666667,0.083333333,0.083333333,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair A2352 - G2365 tHS BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.007437179,0.020446774,0.008392875,0.149501402,0.000000000],[0.014267555,0.007410010,0.256749091,0.010145208,0.000000000],[0.008381803,0.271883842,0.001613333,0.033216822,0.000000000],[0.171243839,0.010152464,0.020696713,0.008461092,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair G2353 - C2364 cWW HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_09705.15:
> IL_09705.15 5J7L C 2350 G 2367 CGAG*CGAG > IL_09705.15 4WF9 C 2377 G 2394 CGAG*CGAG > IL_09705.15 9DFE C 2350 G 2367 CGAG*CGAG > IL_09705.15 7A0S C 2329 G 2346 CGAG*CGAG > IL_09705.15 4XWF U 7 G 39 UGAC*GGAG > IL_09705.15 5AOX A 105 U 61 AGAC*GGAU > IL_09705.15 5BTP U 12 G 44 UGAC*GAAG > IL_09705.15 4LFB U 1481 G 1419 UGAC*GGAG > IL_09705.15 4WF9 U 597 G 584 UGAU*AGAG > IL_09705.15 9BZC U 9 G 39 UGAC*GAAG > IL_09705.15 1SA9 C 211 G 206 CGAG*CGAG > IL_09705.15 3D0U C 67 G 19 CGAG*CGAG > IL_09705.15 8CRE C 184 G 197 CGAC*GAAG > IL_09705.15 1SAQ C 203 G 214 CGAG*CGAG > IL_09705.15 4KZD U 71 A 14 UAAC*GAAA > IL_09705.15 5J7L U 554 G 539 UGAC*GGAG > IL_09705.15 4ZNP G 9 C 40 GGAC*GGAC > IL_09705.15 8P9A C 186 G 199 CGAC*GAAG > IL_09705.15 6YL5 C 12 G 27 CAAC*GGCG > IL_09705.15 8CRE C 1640 G 1734 CGAU*AGAG > IL_09705.15 4UYK C 121 G 80 CCAC*GGCG > IL_09705.15 6YML C 12 G 27 CAAC*GGCG > IL_09705.15 8P9A C 1653 G 1747 CGAU*AGAG > IL_09705.15 8CRE U 1656 A 1719 UGAG*CAAA > IL_09705.15 8T29 G 80 C 11 GAAG*CGAC > IL_09705.15 8P9A U 1669 A 1732 UGAG*CAAA > IL_09705.15 4LFB C 1259 G 1276 CCAC*GGAG > IL_09705.15 8P9A A 3139 U 3007 AGAACG*CAAU > IL_09705.15 8CRE A 3111 U 2979 AGAACG*CAAU > IL_09705.15 4V9F C 2873 G 2884 CGAG*CGAG > IL_09705.15 5J7L G 1416 C 1484 GGAG*UGAC > IL_09705.15 8CRE A 3307 U 3328 AGAG*CGAU > IL_09705.15 8P9A A 3342 U 3363 AGAG*CGAU > IL_09705.15 3DIL C 70 G 22 CGAG*CGAG