Alignment of IL_10167.6 sequences from 3D to the JAR3D model

Previous group | Next group | List of all groups | Motif atlas entry for IL_10167.6
The correspondence between sequences from 3D structures and the motif group is shown in blue and the JAR3D alignment of the sequences to the motif group is shown in black. Occasionally the two disagree, in which case the JAR3D alignment is shown in red.

Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group:	2 2 1	4 3 2	5 3 I	6 4 3	8 5	10 4 4	11 3 I	12 3 5	14 2 6	In acceptance region	Cutoff score	Full edit distance	Interior edit distance	Alignment score deficit
IL_10167.6_Instance_1 IL_10167.6,IL_3R1C_018,C5_G4	C	G		G		C		G	G
IL_10167.6_Sequence_1 IL_10167.63R1C_C5_G4	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_2 IL_10167.6,IL_3R1C_012,C2_G7	C	G		G		C		G	G
IL_10167.6_Sequence_2 IL_10167.63R1C_C2_G7	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_3 IL_10167.6,IL_3SJ2_003,C7_G15	C	G		G		C		G	G
IL_10167.6_Sequence_3 IL_10167.63SJ2_C7_G15	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_4 IL_10167.6,IL_3R1C_011,C2_G7	C	G		G		C		G	G
IL_10167.6_Sequence_4 IL_10167.63R1C_C2_G7	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_5 IL_10167.6,IL_3CZW_001,U7_A12	U	G		A		U		G	A
IL_10167.6_Sequence_5 IL_10167.63CZW_U7_A12	U	G		A	*	U		G	A	true	90	0	0	0.94
IL_10167.6_Instance_6 IL_10167.6,IL_3SJ2_002,C10_G12	C	G		G		C		G	G
IL_10167.6_Sequence_6 IL_10167.63SJ2_C10_G12	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_7 IL_10167.6,IL_3SJ2_001,C7_G15	C	G		G		C		G	G
IL_10167.6_Sequence_7 IL_10167.63SJ2_C7_G15	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_8 IL_10167.6,IL_3R1C_017,C5_G4	C	G		G		C		G	G
IL_10167.6_Sequence_8 IL_10167.63R1C_C5_G4	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_9 IL_10167.6,IL_3W3S_003,G47A_C47P	G	G		U		A		G	C
IL_10167.6_Sequence_9 IL_10167.63W3S_G47A_C47P	G	G		U	*	A		G	C	true	90	0	0	0.92
IL_10167.6_Instance_10 IL_10167.6,IL_3R1D_014,C2_G10	C	G		G		C		G	G
IL_10167.6_Sequence_10 IL_10167.63R1D_C2_G10	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_11 IL_10167.6,IL_4KQ0_003,C9_G11	C	G		G		C		G	G
IL_10167.6_Sequence_11 IL_10167.64KQ0_C9_G11	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_12 IL_10167.6,IL_4KTG_003,G209_C211	G	G		C		G		G	C
IL_10167.6_Sequence_12 IL_10167.64KTG_G209_C211	G	G		C	*	G		G	C	true	93	0	0	0.64
IL_10167.6_Instance_13 IL_10167.6,IL_2R1S_002,U19_A8	U	G		A		U		G	A
IL_10167.6_Sequence_13 IL_10167.62R1S_U19_A8	U	G		A	*	U		G	A	true	90	0	0	0.94
IL_10167.6_Instance_14 IL_10167.6,IL_4E5C_001,C9_G11	C	G		G		C		G	G
IL_10167.6_Sequence_14 IL_10167.64E5C_C9_G11	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_15 IL_10167.6,IL_4KQ0_005,C3_G17	C	G		G		C		G	G
IL_10167.6_Sequence_15 IL_10167.64KQ0_C3_G17	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_16 IL_10167.6,IL_4KQ0_001,C3_G17	C	G		G		C		G	G
IL_10167.6_Sequence_16 IL_10167.64KQ0_C3_G17	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_17 IL_10167.6,IL_3R1D_003,C2_G10	C	G		G		C		G	G
IL_10167.6_Sequence_17 IL_10167.63R1D_C2_G10	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_18 IL_10167.6,IL_4KQ0_002,C6_G14	C	G		G		C		G	G
IL_10167.6_Sequence_18 IL_10167.64KQ0_C6_G14	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_19 IL_10167.6,IL_4KQ0_004,C6_G14	C	G		G		C		G	G
IL_10167.6_Sequence_19 IL_10167.64KQ0_C6_G14	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_20 IL_10167.6,IL_3D0M_001,U7_A12	U	G		A		U		G	A
IL_10167.6_Sequence_20 IL_10167.63D0M_U7_A12	U	G		A	*	U		G	A	true	90	0	0	0.94
IL_10167.6_Instance_21 IL_10167.6,IL_2H1M_003,A21_U12	A	G		U		A		A	U
IL_10167.6_Sequence_21 IL_10167.62H1M_A21_U12	A	G		U	*	A		A	U	true	68	0	0	3.03
IL_10167.6_Instance_22 IL_10167.6,IL_6RA4_002,U403_A405	U	G		A		U		G	A
IL_10167.6_Sequence_22 IL_10167.66RA4_U403_A405	U	G		A	*	U		G	A	true	90	0	0	0.94
IL_10167.6_Instance_23 IL_10167.6,IL_406D_005,U8_G27	U	G		G		U		G	G
IL_10167.6_Sequence_23 IL_10167.6406D_U8_G27	U	G		G	*	U		G	G	true	74	0	0	2.50
IL_10167.6_Instance_24 IL_10167.6,IL_5J7L_011,C176_G146	C	G		C		G		G	G
IL_10167.6_Sequence_24 IL_10167.65J7L_C176_G146	C	G		C	*	G		G	G	true	97	0	0	0.26
IL_10167.6_Instance_25 IL_10167.6,IL_4KTG_001,G203_C217	G	G		C		G		G	C
IL_10167.6_Sequence_25 IL_10167.64KTG_G203_C217	G	G		C	*	G		G	C	true	93	0	0	0.64
IL_10167.6_Instance_26 IL_10167.6,IL_406D_002,U25_G10	U	G		G		U		G	G
IL_10167.6_Sequence_26 IL_10167.6406D_U25_G10	U	G		G	*	U		G	G	true	74	0	0	2.50
IL_10167.6_Instance_27 IL_10167.6,IL_4KTG_005,G203_C217	G	G		C		G		G	C
IL_10167.6_Sequence_27 IL_10167.64KTG_G203_C217	G	G		C	*	G		G	C	true	93	0	0	0.64
IL_10167.6_Instance_28 IL_10167.6,IL_4J50_003,C13_G9	C	A		G		C		A	G
IL_10167.6_Sequence_28 IL_10167.64J50_C13_G9	C	A		G	*	C		A	G	true	66	0	0	3.26
IL_10167.6_Instance_29 IL_10167.6,IL_3R1D_002,C5_G7	C	G		G		C		G	G
IL_10167.6_Sequence_29 IL_10167.63R1D_C5_G7	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_30 IL_10167.6,IL_4J50_001,C13_G9	C	A		G		C		A	G
IL_10167.6_Sequence_30 IL_10167.64J50_C13_G9	C	A		G	*	C		A	G	true	66	0	0	3.26
IL_10167.6_Instance_31 IL_10167.6,IL_4KTG_004,G212_C208	G	G		C		G		G	C
IL_10167.6_Sequence_31 IL_10167.64KTG_G212_C208	G	G		C	*	G		G	C	true	93	0	0	0.64
IL_10167.6_Instance_32 IL_10167.6,IL_6IA2_003,C9_G11	C	G		G		C		G	G
IL_10167.6_Sequence_32 IL_10167.66IA2_C9_G11	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_33 IL_10167.6,IL_4KTG_002,G212_C208	G	G		C		G		G	C
IL_10167.6_Sequence_33 IL_10167.64KTG_G212_C208	G	G		C	*	G		G	C	true	93	0	0	0.64
IL_10167.6_Instance_34 IL_10167.6,IL_4WF9_045,C1277_G1245	C	G		C		G		G	G
IL_10167.6_Sequence_34 IL_10167.64WF9_C_1277_G_1245	C	G		C	*	G		G	G	true	97	0	0	0.26
IL_10167.6_Instance_35 IL_10167.6,IL_2H1M_002,A5_U28	A	G		U		A		A	U
IL_10167.6_Sequence_35 IL_10167.62H1M_A5_U28	A	G		U	*	A		A	U	true	68	0	0	3.03
IL_10167.6_Instance_36 IL_10167.6,IL_3R1E_001,C2_G7	C	G		G		C		G	G
IL_10167.6_Sequence_36 IL_10167.63R1E_C2_G7	C	G		G	*	C		G	G	true	100	0	0	0.00
IL_10167.6_Instance_37 IL_10167.6,IL_4WF9_121,C110_G5	C	A		G		U		G	G
IL_10167.6_Sequence_37 IL_10167.64WF9_C110_G5	C	A		G	*	U		G	G	true	61	0	0	3.73
IL_10167.6_Instance_38 IL_10167.6,IL_5F5F_003,U5_A16	U	G		C		G		G	A
IL_10167.6_Sequence_38 IL_10167.65F5F_U5_A16	U	G		C	*	G		G	A	true	92	0	0	0.74
IL_10167.6_Instance_39 IL_10167.6,IL_8P9A_394,G389_C408	G	G		A		U		A	C
IL_10167.6_Sequence_39 IL_10167.68P9A_G389_C408	G	G		A	*	U		A	C	true	73	0	0	2.59
IL_10167.6_Instance_40 IL_10167.6,IL_8CRE_411,G387_C406	G	G		A		U		A	C
IL_10167.6_Sequence_40 IL_10167.68CRE_G387_C406	G	G		A	*	U		A	C	true	73	0	0	2.59
IL_10167.6_Instance_41 IL_10167.6,IL_5F5F_001,U5_A16	U	G		C		G		G	A
IL_10167.6_Sequence_41 IL_10167.65F5F_U5_A16	U	G		C	*	G		G	A	true	92	0	0	0.74
IL_10167.6_Instance_42 IL_10167.6,IL_8P9A_442,U1290_A1325	U	G		G		C		G	A
IL_10167.6_Sequence_42 IL_10167.68P9A_U_1290_A_1325	U	G		G	*	C		G	A	true	95	0	0	0.48
IL_10167.6_Instance_43 IL_10167.6,IL_7QQX_005,U12_A9	U	G		C		G		G	A
IL_10167.6_Sequence_43 IL_10167.67QQX_U12_A9	U	G		C	*	G		G	A	true	92	0	0	0.74
IL_10167.6_Instance_44 IL_10167.6,IL_8AF0_002,G34_C36	G	U		C		G		U	C
IL_10167.6_Sequence_44 IL_10167.68AF0_G34_C36	G	U		C	*	G		U	C	true	57	0	0	4.06
IL_10167.6_Instance_45 IL_10167.6,IL_406D_004,U25_G10	U	G		G		U		G	G
IL_10167.6_Sequence_45 IL_10167.6406D_U25_G10	U	G		G	*	U		G	G	true	74	0	0	2.50
IL_10167.6_Instance_46 IL_10167.6,IL_406D_006,U25_G10	U	G		G		U		G	G
IL_10167.6_Sequence_46 IL_10167.6406D_U25_G10	U	G		G	*	U		G	G	true	74	0	0	2.50
IL_10167.6_Instance_47 IL_10167.6,IL_8CRE_432,G942_C855	G	U	U	U		G		A	C
IL_10167.6_Sequence_47 IL_10167.68CRE_G942_C855	G	U	U	U	*	G		A	C	true	-13	0	0	10.73
IL_10167.6_Instance_48 IL_10167.6,IL_7MLW_006,C71_G94	C	U		U		A		C	G
IL_10167.6_Sequence_48 IL_10167.67MLW_C71_G94	C	U		U	*	A		C	G	true	53	0	0	4.50
IL_10167.6_Instance_49 IL_10167.6,IL_8CRE_405,G285_C266	G	A		U		A	A	U	C
IL_10167.6_Sequence_49 IL_10167.68CRE_G285_C266	G	A		U	*	A	A	U	C	true	7	0	0	8.87
IL_10167.6_Instance_50 IL_10167.6,IL_8AMI_001,U4_G6	U	G		G		U		G	G
IL_10167.6_Sequence_50 IL_10167.68AMI_U4_G6	U	G		G	*	U		G	G	true	74	0	0	2.50
IL_10167.6_Instance_51 IL_10167.6,IL_8P9A_464,C1711_G1690	C	A		G		U		A	G
IL_10167.6_Sequence_51 IL_10167.68P9A_C_1711_G_1690	C	A		G	*	U		A	G	true	54	0	0	4.38

Conserved interactions between motif group positions in IL_10167.6:

1 2 s33 
1 6 cWW 
2 3 s55 
2 5 cHW 
2 6 s35 
3 4 cWW 
3 5 s55 
4 5 s35 
5 6 s35 
2 2 2BPh

JAR3D SCFG/MRF model for IL_10167.6:

Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.006523925,0.011984413,0.007503431,0.137078606,0.000000000],[0.032040545,0.007753369,0.293160733,0.009008445,0.000000000],[0.007548503,0.198804037,0.001486000,0.016493245,0.000000000],[0.181175620,0.008772008,0.073547105,0.007120018,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C5 - G4 cWW 
BasepairNode | Deletion Probability [0.0000200792489427] | Pair Probability [[0.026264074,0.000968232,0.050442470,0.022960470,0.000000000],[0.000743538,0.012753126,0.000743538,0.000743538,0.000000000],[0.120375995,0.004590917,0.685087873,0.016590463,0.000000000],[0.021514603,0.012982100,0.000743538,0.022495523,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.979384363,0.020547465,0.000067211,0.000000960] | Left Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Right Length Distribution [0.979384363,0.020547465,0.000067211,0.000000960] | Right Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Left Index [2] | Right Index [5] // Basepair G6 - G3 cHW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.006586221,0.026572057,0.007241811,0.167511481,0.000000000],[0.011828336,0.006477970,0.205525124,0.008413984,0.000000000],[0.007196346,0.265401131,0.001422875,0.086618644,0.000000000],[0.156276596,0.008603581,0.025951827,0.008372015,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G7 - C2 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation

Sequences of instances from IL_10167.6:> IL_10167.6 3R1C C 5 G 4 CGG*CGG > IL_10167.6 3R1C C 2 G 7 CGG*CGG > IL_10167.6 3SJ2 C 7 G 15 CGG*CGG > IL_10167.6 3R1C C 2 G 7 CGG*CGG > IL_10167.6 3CZW U 7 A 12 UGA*UGA > IL_10167.6 3SJ2 C 10 G 12 CGG*CGG > IL_10167.6 3SJ2 C 7 G 15 CGG*CGG > IL_10167.6 3R1C C 5 G 4 CGG*CGG > IL_10167.6 3W3S G 47A C 47P GGU*AGC > IL_10167.6 3R1D C 2 G 10 CGG*CGG > IL_10167.6 4KQ0 C 9 G 11 CGG*CGG > IL_10167.6 4KTG G 209 C 211 GGC*GGC > IL_10167.6 2R1S U 19 A 8 UGA*UGA > IL_10167.6 4E5C C 9 G 11 CGG*CGG > IL_10167.6 4KQ0 C 3 G 17 CGG*CGG > IL_10167.6 4KQ0 C 3 G 17 CGG*CGG > IL_10167.6 3R1D C 2 G 10 CGG*CGG > IL_10167.6 4KQ0 C 6 G 14 CGG*CGG > IL_10167.6 4KQ0 C 6 G 14 CGG*CGG > IL_10167.6 3D0M U 7 A 12 UGA*UGA > IL_10167.6 2H1M A 21 U 12 AGU*AAU > IL_10167.6 6RA4 U 403 A 405 UGA*UGA > IL_10167.6 406D U 8 G 27 UGG*UGG > IL_10167.6 5J7L C 176 G 146 CGC*GGG > IL_10167.6 4KTG G 203 C 217 GGC*GGC > IL_10167.6 406D U 25 G 10 UGG*UGG > IL_10167.6 4KTG G 203 C 217 GGC*GGC > IL_10167.6 4J50 C 13 G 9 CAG*CAG > IL_10167.6 3R1D C 5 G 7 CGG*CGG > IL_10167.6 4J50 C 13 G 9 CAG*CAG > IL_10167.6 4KTG G 212 C 208 GGC*GGC > IL_10167.6 6IA2 C 9 G 11 CGG*CGG > IL_10167.6 4KTG G 212 C 208 GGC*GGC > IL_10167.6 4WF9 C 1277 G 1245 CGC*GGG > IL_10167.6 2H1M A 5 U 28 AGU*AAU > IL_10167.6 3R1E C 2 G 7 CGG*CGG > IL_10167.6 4WF9 C 110 G 5 CAG*UGG > IL_10167.6 5F5F U 5 A 16 UGC*GGA > IL_10167.6 8P9A G 389 C 408 GGA*UAC > IL_10167.6 8CRE G 387 C 406 GGA*UAC > IL_10167.6 5F5F U 5 A 16 UGC*GGA > IL_10167.6 8P9A U 1290 A 1325 UGG*CGA > IL_10167.6 7QQX U 12 A 9 UGC*GGA > IL_10167.6 8AF0 G 34 C 36 GUC*GUC > IL_10167.6 406D U 25 G 10 UGG*UGG > IL_10167.6 406D U 25 G 10 UGG*UGG > IL_10167.6 8CRE G 942 C 855 GUUU*GAC > IL_10167.6 7MLW C 71 G 94 CUU*ACG > IL_10167.6 8CRE G 285 C 266 GAU*AAUC > IL_10167.6 8AMI U 4 G 6 UGG*UGG > IL_10167.6 8P9A C 1711 G 1690 CAG*UAG