| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 4 I | 8 5 | 9 4 I | 10 4 4 | 11 3 I | 12 3 5 | 13 2 I | 14 2 6 | 15 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_28037.2_Instance_1 IL_28037.2,IL_3BNN_008,G17_C5 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_1 IL_28037.23BNN_G17_C5 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_2 IL_28037.2,IL_3BNR_012,G19_C5 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_2 IL_28037.23BNR_G19_C5 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_3 IL_28037.2,IL_2O3Y_004,G28_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_3 IL_28037.22O3Y_G28_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_4 IL_28037.2,IL_4KYY_003,A11_U7 | A | U | C | G | U | U | ||||||||||||||
| IL_28037.2_Sequence_4 IL_28037.24KYY_A11_U7 | A | U | C | * | G | U | U | true | 98 | 0 | 0 | 0.18 | ||||||||
| IL_28037.2_Instance_5 IL_28037.2,IL_2OE8_001,G1494_C1407 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_5 IL_28037.22OE8_G_1494_C_1407 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_6 IL_28037.2,IL_3BNN_005,G3_C19 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_6 IL_28037.23BNN_G3_C19 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_7 IL_28037.2,IL_2O3Y_001,G5_C44 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_7 IL_28037.22O3Y_G5_C44 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_8 IL_28037.2,IL_1MFQ_002,A228_U122 | A | U | C | G | U | U | ||||||||||||||
| IL_28037.2_Sequence_8 IL_28037.21MFQ_A228_U122 | A | U | C | * | G | U | U | true | 98 | 0 | 0 | 0.18 | ||||||||
| IL_28037.2_Instance_9 IL_28037.2,IL_4K31_004,G5_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_9 IL_28037.24K31_G5_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_10 IL_28037.2,IL_4K31_001,G5_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_10 IL_28037.24K31_G5_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_11 IL_28037.2,IL_2OE5_001,G1494_C1407 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_11 IL_28037.22OE5_G_1494_C_1407 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_12 IL_28037.2,IL_4KYY_001,A11_U7 | A | U | C | G | U | U | ||||||||||||||
| IL_28037.2_Sequence_12 IL_28037.24KYY_A11_U7 | A | U | C | * | G | U | U | true | 98 | 0 | 0 | 0.18 | ||||||||
| IL_28037.2_Instance_13 IL_28037.2,IL_3TD0_006,G28_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_13 IL_28037.23TD0_G28_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_14 IL_28037.2,IL_5ZTM_002,A123_U159 | A | U | C | G | U | U | ||||||||||||||
| IL_28037.2_Sequence_14 IL_28037.25ZTM_A123_U159 | A | U | C | * | G | U | U | true | 98 | 0 | 0 | 0.18 | ||||||||
| IL_28037.2_Instance_15 IL_28037.2,IL_4JGN_001,C517_G507 | C | U | G | C | U | G | ||||||||||||||
| IL_28037.2_Sequence_15 IL_28037.24JGN_C517_G507 | C | U | G | * | C | U | G | true | 90 | 0 | 0 | 0.93 | ||||||||
| IL_28037.2_Instance_16 IL_28037.2,IL_3U4M_001,A2108_U2181 | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_16 IL_28037.23U4M_A_2108_U_2181 | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_17 IL_28037.2,IL_3BNR_007,G5_C19 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_17 IL_28037.23BNR_G5_C19 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_18 IL_28037.2,IL_5B2P_001,U24_A50 | U | U | C | G | U | A | ||||||||||||||
| IL_28037.2_Sequence_18 IL_28037.25B2P_U24_A50 | U | U | C | * | G | U | A | true | 91 | 0 | 0 | 0.83 | ||||||||
| IL_28037.2_Instance_19 IL_28037.2,IL_9DID_001,A76_U11 | A | C | C | G | U | U | ||||||||||||||
| IL_28037.2_Sequence_19 IL_28037.29DID_A76_U11 | A | C | C | * | G | U | U | true | 67 | 0 | 0 | 3.16 | ||||||||
| IL_28037.2_Instance_20 IL_28037.2,IL_3LOA_002,G1494_C1407 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_20 IL_28037.23LOA_G_1494_C_1407 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_21 IL_28037.2,IL_2O3V_001,G5_C44 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_21 IL_28037.22O3V_G5_C44 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_22 IL_28037.2,IL_7XPL_001,A6_U24 | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_22 IL_28037.27XPL_A6_U24 | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_23 IL_28037.2,IL_8CRE_124,A2984_U3014 | A | U | U | A | U | U | ||||||||||||||
| IL_28037.2_Sequence_23 IL_28037.28CRE_A_2984_U_3014 | A | U | U | * | A | U | U | true | 90 | 0 | 0 | 0.97 | ||||||||
| IL_28037.2_Instance_24 IL_28037.2,IL_2O3V_004,G28_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_24 IL_28037.22O3V_G28_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_25 IL_28037.2,IL_8P9A_343,A3012_U3042 | A | U | U | A | U | U | ||||||||||||||
| IL_28037.2_Sequence_25 IL_28037.28P9A_A_3012_U_3042 | A | U | U | * | A | U | U | true | 90 | 0 | 0 | 0.97 | ||||||||
| IL_28037.2_Instance_26 IL_28037.2,IL_5WTI_002,G10_C20 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_26 IL_28037.25WTI_G10_C20 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_27 IL_28037.2,IL_3TD0_001,G42_C7 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_27 IL_28037.23TD0_G42_C7 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_28 IL_28037.2,IL_4P3U_006,G28_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_28 IL_28037.24P3U_G28_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_29 IL_28037.2,IL_4V9F_047,G1349_C1305 | G | U | G | C | U | C | ||||||||||||||
| IL_28037.2_Sequence_29 IL_28037.24V9F_G_1349_C_1305 | G | U | G | * | C | U | C | true | 96 | 0 | 0 | 0.41 | ||||||||
| IL_28037.2_Instance_30 IL_28037.2,IL_4TS2_004,C77_G22 | C | U | C | G | U | G | ||||||||||||||
| IL_28037.2_Sequence_30 IL_28037.24TS2_C77_G22 | C | U | C | * | G | U | G | true | 95 | 0 | 0 | 0.51 | ||||||||
| IL_28037.2_Instance_31 IL_28037.2,IL_8P9A_262,A965_U956 | A | U | A | U | U | U | ||||||||||||||
| IL_28037.2_Sequence_31 IL_28037.28P9A_A965_U956 | A | U | A | * | U | U | U | true | 90 | 0 | 0 | 0.96 | ||||||||
| IL_28037.2_Instance_32 IL_28037.2,IL_7L0Z_001,G10_C60 | G | U | G | C | U | C | ||||||||||||||
| IL_28037.2_Sequence_32 IL_28037.27L0Z_G10_C60 | G | U | G | * | C | U | C | true | 96 | 0 | 0 | 0.41 | ||||||||
| IL_28037.2_Instance_33 IL_28037.2,IL_8CRE_404,A255_U206 | A | C | U | A | U | U | ||||||||||||||
| IL_28037.2_Sequence_33 IL_28037.28CRE_A255_U206 | A | C | U | * | A | U | U | true | 58 | 0 | 0 | 3.95 | ||||||||
| IL_28037.2_Instance_34 IL_28037.2,IL_6E7L_001,C4_G19 | C | U | G | C | U | G | ||||||||||||||
| IL_28037.2_Sequence_34 IL_28037.26E7L_C4_G19 | C | U | G | * | C | U | G | true | 90 | 0 | 0 | 0.93 | ||||||||
| IL_28037.2_Instance_35 IL_28037.2,IL_3BNT_001,G4_C20 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_35 IL_28037.23BNT_G4_C20 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_36 IL_28037.2,IL_8CRE_037,A961_U952 | A | U | A | U | U | U | ||||||||||||||
| IL_28037.2_Sequence_36 IL_28037.28CRE_A961_U952 | A | U | A | * | U | U | U | true | 90 | 0 | 0 | 0.96 | ||||||||
| IL_28037.2_Instance_37 IL_28037.2,IL_1ZX7_006,G10_C26 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_37 IL_28037.21ZX7_G10_C26 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_38 IL_28037.2,IL_4P3U_007,G42_C7 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_38 IL_28037.24P3U_G42_C7 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_39 IL_28037.2,IL_5MWI_001,C23_G4 | C | U | G | C | U | G | ||||||||||||||
| IL_28037.2_Sequence_39 IL_28037.25MWI_C23_G4 | C | U | G | * | C | U | G | true | 90 | 0 | 0 | 0.93 | ||||||||
| IL_28037.2_Instance_40 IL_28037.2,IL_5T3K_002,G10_C26 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_40 IL_28037.25T3K_G10_C26 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_41 IL_28037.2,IL_2ET8_004,G27_C20 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_41 IL_28037.22ET8_G27_C20 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_42 IL_28037.2,IL_4KNQ_001,C216_G206 | C | C | G | C | C | G | ||||||||||||||
| IL_28037.2_Sequence_42 IL_28037.24KNQ_C216_G206 | C | C | G | * | C | C | G | true | 56 | 0 | 0 | 4.23 | ||||||||
| IL_28037.2_Instance_43 IL_28037.2,IL_8FEQ_001,G4_C13 | G | U | A | U | U | C | ||||||||||||||
| IL_28037.2_Sequence_43 IL_28037.28FEQ_G4_C13 | G | U | A | * | U | U | C | true | 92 | 0 | 0 | 0.78 | ||||||||
| IL_28037.2_Instance_44 IL_28037.2,IL_4KZD_003,G17_C68 | G | U | G | C | U | C | ||||||||||||||
| IL_28037.2_Sequence_44 IL_28037.24KZD_G17_C68 | G | U | G | * | C | U | C | true | 96 | 0 | 0 | 0.41 | ||||||||
| IL_28037.2_Instance_45 IL_28037.2,IL_1MZP_001,A4_U52 | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_45 IL_28037.21MZP_A4_U52 | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_46 IL_28037.2,IL_1U6B_005,A117_U102 | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_46 IL_28037.21U6B_A117_U102 | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_47 IL_28037.2,IL_8P9A_387,A206_U259 | A | U | U | A | C | U | ||||||||||||||
| IL_28037.2_Sequence_47 IL_28037.28P9A_A206_U259 | A | U | U | * | A | C | U | true | 56 | 0 | 0 | 4.16 | ||||||||
| IL_28037.2_Instance_48 IL_28037.2,IL_8P9A_350,A3168_U3282 | A | U | A | U | U | U | ||||||||||||||
| IL_28037.2_Sequence_48 IL_28037.28P9A_A_3168_U_3282 | A | U | A | * | U | U | U | true | 90 | 0 | 0 | 0.96 | ||||||||
| IL_28037.2_Instance_49 IL_28037.2,IL_4LFB_047,G1061_C1195 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_49 IL_28037.24LFB_G_1061_C_1195 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_50 IL_28037.2,IL_2O3X_004,G28_C21 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_50 IL_28037.22O3X_G28_C21 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_51 IL_28037.2,IL_6SX2_001,U9_A11 | U | U | A | U | U | A | ||||||||||||||
| IL_28037.2_Sequence_51 IL_28037.26SX2_U9_A11 | U | U | A | * | U | U | A | true | 83 | 0 | 0 | 1.61 | ||||||||
| IL_28037.2_Instance_52 IL_28037.2,IL_5J7L_326,C2232_G2087 | C | U | G | U | U | G | ||||||||||||||
| IL_28037.2_Sequence_52 IL_28037.25J7L_C_2232_G_2087 | C | U | G | * | U | U | G | true | 77 | 0 | 0 | 2.19 | ||||||||
| IL_28037.2_Instance_53 IL_28037.2,IL_8CRE_429,A783_U735 | A | U | G | U | U | U | ||||||||||||||
| IL_28037.2_Sequence_53 IL_28037.28CRE_A783_U735 | A | U | G | * | U | U | U | true | 81 | 0 | 0 | 1.85 | ||||||||
| IL_28037.2_Instance_54 IL_28037.2,IL_1T0E_002,G10_C16 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_54 IL_28037.21T0E_G10_C16 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_55 IL_28037.2,IL_7A0S_078,C2068_G2213 | C | U | G | U | U | G | ||||||||||||||
| IL_28037.2_Sequence_55 IL_28037.27A0S_C_2068_G_2213 | C | U | G | * | U | U | G | true | 77 | 0 | 0 | 2.19 | ||||||||
| IL_28037.2_Instance_56 IL_28037.2,IL_3RG5_002,A5B_U67A | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_56 IL_28037.23RG5_A5B_U67A | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_57 IL_28037.2,IL_5J7L_050,G1061_C1195 | G | U | C | G | U | C | ||||||||||||||
| IL_28037.2_Sequence_57 IL_28037.25J7L_G_1061_C_1195 | G | U | C | * | G | U | C | true | 100 | 0 | 0 | 0.00 | ||||||||
| IL_28037.2_Instance_58 IL_28037.2,IL_7QQX_004,A11_U10 | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_58 IL_28037.27QQX_A11_U10 | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_59 IL_28037.2,IL_9DFE_083,C2085_G2234 | C | U | G | U | U | G | ||||||||||||||
| IL_28037.2_Sequence_59 IL_28037.29DFE_C_2085_G_2234 | C | U | G | * | U | U | G | true | 77 | 0 | 0 | 2.19 | ||||||||
| IL_28037.2_Instance_60 IL_28037.2,IL_4PCJ_001,C33_G3 | C | U | G | C | U | G | ||||||||||||||
| IL_28037.2_Sequence_60 IL_28037.24PCJ_C33_G3 | C | U | G | * | C | U | G | true | 90 | 0 | 0 | 0.93 | ||||||||
| IL_28037.2_Instance_61 IL_28037.2,IL_5VCI_001,C10_G3 | C | U | G | C | U | G | ||||||||||||||
| IL_28037.2_Sequence_61 IL_28037.25VCI_C10_G3 | C | U | G | * | C | U | G | true | 90 | 0 | 0 | 0.93 | ||||||||
| IL_28037.2_Instance_62 IL_28037.2,IL_8P9A_413,A799_U750 | A | U | G | U | U | U | ||||||||||||||
| IL_28037.2_Sequence_62 IL_28037.28P9A_A799_U750 | A | U | G | * | U | U | U | true | 81 | 0 | 0 | 1.85 | ||||||||
| IL_28037.2_Instance_63 IL_28037.2,IL_8G9Z_001,A5B_U67A | A | U | G | C | U | U | ||||||||||||||
| IL_28037.2_Sequence_63 IL_28037.28G9Z_A5B_U67A | A | U | G | * | C | U | U | true | 94 | 0 | 0 | 0.59 | ||||||||
| IL_28037.2_Instance_64 IL_28037.2,IL_1L9A_009,A228_U122 | A | U | C | G | U | U | ||||||||||||||
| IL_28037.2_Sequence_64 IL_28037.21L9A_A228_U122 | A | U | C | * | G | U | U | true | 98 | 0 | 0 | 0.18 | ||||||||
| IL_28037.2_Instance_65 IL_28037.2,IL_5J7L_273,U870_G907 | U | U | U | A | U | G | ||||||||||||||
| IL_28037.2_Sequence_65 IL_28037.25J7L_U870_G907 | U | U | U | * | A | U | G | true | 65 | 0 | 0 | 3.33 |
1 2 s35 1 6 cWW 2 3 s35 2 5 cWW 2 6 s55 3 4 cWW 3 5 s55 4 5 s35 5 6 s35JAR3D SCFG/MRF model for IL_28037.2:
Character Definition | A,C,G,U,* // Identity and order of characters in matrices InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.005905213,0.012482261,0.006603807,0.256474835,0.000000000],[0.013768475,0.006104336,0.183182219,0.007631643,0.000000000],[0.006579698,0.305945703,0.001292247,0.021580133,0.000000000],[0.133699069,0.007841810,0.024273386,0.006635166,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair G17 - C5 cWW BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.009522267,0.164405918,0.009420155,0.014747973,0.000000000],[0.010981256,0.022770924,0.012867524,0.031313552,0.000000000],[0.009283780,0.013076778,0.002625432,0.032151743,0.000000000],[0.013006357,0.025418423,0.011076814,0.617331104,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair U18 - U4 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.006189124,0.024613212,0.006855291,0.148281278,0.000000000],[0.011692023,0.006124349,0.324860781,0.008183484,0.000000000],[0.006861788,0.215003005,0.001342207,0.061018069,0.000000000],[0.146440392,0.008160433,0.016539903,0.007834662,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair C19 - G3 cWW HairpinNode | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_28037.2:
> IL_28037.2 3BNN G 17 C 5 GUC*GUC > IL_28037.2 3BNR G 19 C 5 GUC*GUC > IL_28037.2 2O3Y G 28 C 21 GUC*GUC > IL_28037.2 4KYY A 11 U 7 AUC*GUU > IL_28037.2 2OE8 G 1494 C 1407 GUC*GUC > IL_28037.2 3BNN G 3 C 19 GUC*GUC > IL_28037.2 2O3Y G 5 C 44 GUC*GUC > IL_28037.2 1MFQ A 228 U 122 AUC*GUU > IL_28037.2 4K31 G 5 C 21 GUC*GUC > IL_28037.2 4K31 G 5 C 21 GUC*GUC > IL_28037.2 2OE5 G 1494 C 1407 GUC*GUC > IL_28037.2 4KYY A 11 U 7 AUC*GUU > IL_28037.2 3TD0 G 28 C 21 GUC*GUC > IL_28037.2 5ZTM A 123 U 159 AUC*GUU > IL_28037.2 4JGN C 517 G 507 CUG*CUG > IL_28037.2 3U4M A 2108 U 2181 AUG*CUU > IL_28037.2 3BNR G 5 C 19 GUC*GUC > IL_28037.2 5B2P U 24 A 50 UUC*GUA > IL_28037.2 9DID A 76 U 11 ACC*GUU > IL_28037.2 3LOA G 1494 C 1407 GUC*GUC > IL_28037.2 2O3V G 5 C 44 GUC*GUC > IL_28037.2 7XPL A 6 U 24 AUG*CUU > IL_28037.2 8CRE A 2984 U 3014 AUU*AUU > IL_28037.2 2O3V G 28 C 21 GUC*GUC > IL_28037.2 8P9A A 3012 U 3042 AUU*AUU > IL_28037.2 5WTI G 10 C 20 GUC*GUC > IL_28037.2 3TD0 G 42 C 7 GUC*GUC > IL_28037.2 4P3U G 28 C 21 GUC*GUC > IL_28037.2 4V9F G 1349 C 1305 GUG*CUC > IL_28037.2 4TS2 C 77 G 22 CUC*GUG > IL_28037.2 8P9A A 965 U 956 AUA*UUU > IL_28037.2 7L0Z G 10 C 60 GUG*CUC > IL_28037.2 8CRE A 255 U 206 ACU*AUU > IL_28037.2 6E7L C 4 G 19 CUG*CUG > IL_28037.2 3BNT G 4 C 20 GUC*GUC > IL_28037.2 8CRE A 961 U 952 AUA*UUU > IL_28037.2 1ZX7 G 10 C 26 GUC*GUC > IL_28037.2 4P3U G 42 C 7 GUC*GUC > IL_28037.2 5MWI C 23 G 4 CUG*CUG > IL_28037.2 5T3K G 10 C 26 GUC*GUC > IL_28037.2 2ET8 G 27 C 20 GUC*GUC > IL_28037.2 4KNQ C 216 G 206 CCG*CCG > IL_28037.2 8FEQ G 4 C 13 GUA*UUC > IL_28037.2 4KZD G 17 C 68 GUG*CUC > IL_28037.2 1MZP A 4 U 52 AUG*CUU > IL_28037.2 1U6B A 117 U 102 AUG*CUU > IL_28037.2 8P9A A 206 U 259 AUU*ACU > IL_28037.2 8P9A A 3168 U 3282 AUA*UUU > IL_28037.2 4LFB G 1061 C 1195 GUC*GUC > IL_28037.2 2O3X G 28 C 21 GUC*GUC > IL_28037.2 6SX2 U 9 A 11 UUA*UUA > IL_28037.2 5J7L C 2232 G 2087 CUG*UUG > IL_28037.2 8CRE A 783 U 735 AUG*UUU > IL_28037.2 1T0E G 10 C 16 GUC*GUC > IL_28037.2 7A0S C 2068 G 2213 CUG*UUG > IL_28037.2 3RG5 A 5B U 67A AUG*CUU > IL_28037.2 5J7L G 1061 C 1195 GUC*GUC > IL_28037.2 7QQX A 11 U 10 AUG*CUU > IL_28037.2 9DFE C 2085 G 2234 CUG*UUG > IL_28037.2 4PCJ C 33 G 3 CUG*CUG > IL_28037.2 5VCI C 10 G 3 CUG*CUG > IL_28037.2 8P9A A 799 U 750 AUG*UUU > IL_28037.2 8G9Z A 5B U 67A AUG*CUU > IL_28037.2 1L9A A 228 U 122 AUC*GUU > IL_28037.2 5J7L U 870 G 907 UUU*AUG