Alignment of IL_31462.6 sequences from 3D to the JAR3D model

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The correspondence between sequences from 3D structures and the motif group is shown in blue and the JAR3D alignment of the sequences to the motif group is shown in black. Occasionally the two disagree, in which case the JAR3D alignment is shown in red.

Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group:	2 2 1	4 3 2	6 5 3	8 6	10 5 4	12 2 5	In acceptance region	Cutoff score	Full edit distance	Interior edit distance	Alignment score deficit
IL_31462.6_Instance_1 IL_31462.6,IL_8VFS_002,A11_U18	A	A	G		C	U
IL_31462.6_Sequence_1 IL_31462.68VFS_A11_U18	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_2 IL_31462.6,IL_1DUQ_002,G120_C109	G	A	C		G	C
IL_31462.6_Sequence_2 IL_31462.61DUQ_G120_C109	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_3 IL_31462.6,IL_9DE7_002,A15_U46	A	A	G		C	U
IL_31462.6_Sequence_3 IL_31462.69DE7_A15_U46	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_4 IL_31462.6,IL_1I9X_002,U4_A10	U	A	A		U	A
IL_31462.6_Sequence_4 IL_31462.61I9X_U4_A10	U	A	A	*	U	A	true	82	0	0	1.70
IL_31462.6_Instance_5 IL_31462.6,IL_1CSL_002,G67_C51	G	A	C		G	C
IL_31462.6_Sequence_5 IL_31462.61CSL_G67_C51	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_6 IL_31462.6,IL_5AOX_002,G56_C109	G	A	G		C	C
IL_31462.6_Sequence_6 IL_31462.65AOX_G56_C109	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_7 IL_31462.6,IL_8P9A_242,G337_U26	G	A	C		G	U
IL_31462.6_Sequence_7 IL_31462.68P9A_G337_U26	G	A	C	*	G	U	true	76	0	0	2.25
IL_31462.6_Instance_8 IL_31462.6,IL_3CGP_002,U19_A7	U	A	A		U	A
IL_31462.6_Sequence_8 IL_31462.63CGP_U19_A7	U	A	A	*	U	A	true	82	0	0	1.70
IL_31462.6_Instance_9 IL_31462.6,IL_8CRE_020,C575_G509	C	A	G		C	G
IL_31462.6_Sequence_9 IL_31462.68CRE_C575_G509	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_10 IL_31462.6,IL_9DFE_047,G1219_C1230	G	A	C		G	C
IL_31462.6_Sequence_10 IL_31462.69DFE_G_1219_C_1230	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_11 IL_31462.6,IL_9DID_005,U35_A49	U	A	U		A	A
IL_31462.6_Sequence_11 IL_31462.69DID_U35_A49	U	A	U	*	A	A	true	84	0	0	1.51
IL_31462.6_Instance_12 IL_31462.6,IL_5J7L_039,U1393_A923	U	A	C		G	A
IL_31462.6_Sequence_12 IL_31462.65J7L_U_1393_A923	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_13 IL_31462.6,IL_8VM9_003,U43_G76	U	A	G		C	G
IL_31462.6_Sequence_13 IL_31462.68VM9_U43_G76	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_14 IL_31462.6,IL_8CRE_014,G337_U26	G	A	C		G	U
IL_31462.6_Sequence_14 IL_31462.68CRE_G337_U26	G	A	C	*	G	U	true	76	0	0	2.25
IL_31462.6_Instance_15 IL_31462.6,IL_4LFB_035,U1393_A923	U	A	C		G	A
IL_31462.6_Sequence_15 IL_31462.64LFB_U_1393_A923	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_16 IL_31462.6,IL_8CRE_443,U1617_A1132	U	A	C		G	A
IL_31462.6_Sequence_16 IL_31462.68CRE_U_1617_A_1132	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_17 IL_31462.6,IL_8P9A_429,U1630_A1147	U	A	C		G	A
IL_31462.6_Sequence_17 IL_31462.68P9A_U_1630_A_1147	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_18 IL_31462.6,IL_4P3U_005,A17_U31	A	A	G		C	U
IL_31462.6_Sequence_18 IL_31462.64P3U_A17_U31	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_19 IL_31462.6,IL_9DFE_032,U895_G881	U	A	C		G	G
IL_31462.6_Sequence_19 IL_31462.69DFE_U895_G881	U	A	C	*	G	G	true	84	0	0	1.50
IL_31462.6_Instance_20 IL_31462.6,IL_4P3U_011,A17_U31	A	A	G		C	U
IL_31462.6_Sequence_20 IL_31462.64P3U_A17_U31	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_21 IL_31462.6,IL_8P9A_273,U1074_A1084	U	A	C		G	A
IL_31462.6_Sequence_21 IL_31462.68P9A_U_1074_A_1084	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_22 IL_31462.6,IL_1EFO_002,G15_C4	G	A	G		C	C
IL_31462.6_Sequence_22 IL_31462.61EFO_G15_C4	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_23 IL_31462.6,IL_4R4V_003,C651_G767	C	A	G		C	G
IL_31462.6_Sequence_23 IL_31462.64R4V_C651_G767	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_24 IL_31462.6,IL_8VFS_004,U10_G19	U	A	A		U	G
IL_31462.6_Sequence_24 IL_31462.68VFS_U10_G19	U	A	A	*	U	G	true	77	0	0	2.17
IL_31462.6_Instance_25 IL_31462.6,IL_7JJU_004,C31_G13	C	A	U		A	G
IL_31462.6_Sequence_25 IL_31462.67JJU_C31_G13	C	A	U	*	A	G	true	88	0	0	1.18
IL_31462.6_Instance_26 IL_31462.6,IL_7JJU_002,C31_G13	C	A	U		A	G
IL_31462.6_Sequence_26 IL_31462.67JJU_C31_G13	C	A	U	*	A	G	true	88	0	0	1.18
IL_31462.6_Instance_27 IL_31462.6,IL_6XH2_002,G34_C30	G	A	G		C	C
IL_31462.6_Sequence_27 IL_31462.66XH2_G34_C30	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_28 IL_31462.6,IL_4P3U_008,A40_U8	A	A	G		C	U
IL_31462.6_Sequence_28 IL_31462.64P3U_A40_U8	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_29 IL_31462.6,IL_8P9A_246,C577_G513	C	A	G		U	G
IL_31462.6_Sequence_29 IL_31462.68P9A_C577_G513	C	A	G	*	U	G	true	64	0	0	3.38
IL_31462.6_Instance_30 IL_31462.6,IL_5J7L_246,G442_C37	G	A	C		G	C
IL_31462.6_Sequence_30 IL_31462.65J7L_G442_C37	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_31 IL_31462.6,IL_4AOB_001,G13_C41	G	A	G		C	C
IL_31462.6_Sequence_31 IL_31462.64AOB_G13_C41	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_32 IL_31462.6,IL_9DFE_002,G442_C37	G	A	C		G	C
IL_31462.6_Sequence_32 IL_31462.69DFE_G442_C37	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_33 IL_31462.6,IL_3B31_001,C6181_G6195	C	A	G		C	G
IL_31462.6_Sequence_33 IL_31462.63B31_C_6181_G_6195	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_34 IL_31462.6,IL_4WF9_002,G488_C37	G	A	C		G	C
IL_31462.6_Sequence_34 IL_31462.64WF9_G488_C37	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_35 IL_31462.6,IL_5J7L_344,C2601_G2592	C	A	G		C	G
IL_31462.6_Sequence_35 IL_31462.65J7L_C_2601_G_2592	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_36 IL_31462.6,IL_1I9X_001,U4_A10	U	A	A		U	A
IL_31462.6_Sequence_36 IL_31462.61I9X_U4_A10	U	A	A	*	U	A	true	82	0	0	1.70
IL_31462.6_Instance_37 IL_31462.6,IL_9DFE_069,G1980_C1771	G	A	C		G	C
IL_31462.6_Sequence_37 IL_31462.69DFE_G_1980_C_1771	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_38 IL_31462.6,IL_2VPL_002,G28_C17	G	A	A		U	C
IL_31462.6_Sequence_38 IL_31462.62VPL_G28_C17	G	A	A	*	U	C	true	89	0	0	1.01
IL_31462.6_Instance_39 IL_31462.6,IL_1U9S_001,G107_C96	G	A	C		G	C
IL_31462.6_Sequence_39 IL_31462.61U9S_G107_C96	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_40 IL_31462.6,IL_1NBS_005,G129_C114	G	A	C		G	C
IL_31462.6_Sequence_40 IL_31462.61NBS_G129_C114	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_41 IL_31462.6,IL_8CRE_026,G775_C749	G	A	G		C	C
IL_31462.6_Sequence_41 IL_31462.68CRE_G775_C749	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_42 IL_31462.6,IL_8P9A_252,G779_C753	G	A	G		C	C
IL_31462.6_Sequence_42 IL_31462.68P9A_G779_C753	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_43 IL_31462.6,IL_6WPI_001,G11_C42	G	A	A		U	C
IL_31462.6_Sequence_43 IL_31462.66WPI_G11_C42	G	A	A	*	U	C	true	89	0	0	1.01
IL_31462.6_Instance_44 IL_31462.6,IL_2C4Q_001,G5_C15	G	A	G		C	C
IL_31462.6_Sequence_44 IL_31462.62C4Q_G5_C15	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_45 IL_31462.6,IL_8P9A_388,A265_U289	A	A	U		A	U
IL_31462.6_Sequence_45 IL_31462.68P9A_A265_U289	A	A	U	*	A	U	true	83	0	0	1.62
IL_31462.6_Instance_46 IL_31462.6,IL_8CRE_122,C2942_G2933	C	A	G		C	G
IL_31462.6_Sequence_46 IL_31462.68CRE_C_2942_G_2933	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_47 IL_31462.6,IL_8P9A_310,G2323_U2129	G	A	G		C	U
IL_31462.6_Sequence_47 IL_31462.68P9A_G_2323_U_2129	G	A	G	*	C	U	true	80	0	0	1.90
IL_31462.6_Instance_48 IL_31462.6,IL_1JZV_002,U12_A5	U	A	C		G	A
IL_31462.6_Sequence_48 IL_31462.61JZV_U12_A5	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_49 IL_31462.6,IL_4V9F_064,C2021_G1827	C	A	G		C	G
IL_31462.6_Sequence_49 IL_31462.64V9F_C_2021_G_1827	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_50 IL_31462.6,IL_4P3U_002,A40_U8	A	A	G		C	U
IL_31462.6_Sequence_50 IL_31462.64P3U_A40_U8	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_51 IL_31462.6,IL_8CRE_131,G3147_C3176	G	A	U		A	C
IL_31462.6_Sequence_51 IL_31462.68CRE_G_3147_C_3176	G	A	U	*	A	C	true	91	0	0	0.83
IL_31462.6_Instance_52 IL_31462.6,IL_5WWT_001,G37_C32	G	A	U		A	C
IL_31462.6_Sequence_52 IL_31462.65WWT_G37_C32	G	A	U	*	A	C	true	91	0	0	0.83
IL_31462.6_Instance_53 IL_31462.6,IL_8P9A_399,A505_U482	A	A	U		A	U
IL_31462.6_Sequence_53 IL_31462.68P9A_A505_U482	A	A	U	*	A	U	true	83	0	0	1.62
IL_31462.6_Instance_54 IL_31462.6,IL_8CRE_087,G2301_U2107	G	A	G		C	U
IL_31462.6_Sequence_54 IL_31462.68CRE_G_2301_U_2107	G	A	G	*	C	U	true	80	0	0	1.90
IL_31462.6_Instance_55 IL_31462.6,IL_3V7E_001,G13_C41	G	A	G		C	C
IL_31462.6_Sequence_55 IL_31462.63V7E_G13_C41	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_56 IL_31462.6,IL_4R4V_004,U712_A661	U	A	G		C	A
IL_31462.6_Sequence_56 IL_31462.64R4V_U712_A661	U	A	G	*	C	A	true	93	0	0	0.69
IL_31462.6_Instance_57 IL_31462.6,IL_7A0S_064,G1963_C1762	G	A	U		G	C
IL_31462.6_Sequence_57 IL_31462.67A0S_G_1963_C_1762	G	A	U	*	G	C	true	73	0	0	2.53
IL_31462.6_Instance_58 IL_31462.6,IL_7MKY_001,G49_C36	G	A	U		A	C
IL_31462.6_Sequence_58 IL_31462.67MKY_G49_C36	G	A	U	*	A	C	true	91	0	0	0.83
IL_31462.6_Instance_59 IL_31462.6,IL_8P9A_341,C2970_G2961	C	A	G		C	G
IL_31462.6_Sequence_59 IL_31462.68P9A_C_2970_G_2961	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_60 IL_31462.6,IL_7A0S_002,G454_C37	G	A	C		G	C
IL_31462.6_Sequence_60 IL_31462.67A0S_G454_C37	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_61 IL_31462.6,IL_1U63_004,G28_C17	G	A	A		U	C
IL_31462.6_Sequence_61 IL_31462.61U63_G28_C17	G	A	A	*	U	C	true	89	0	0	1.01
IL_31462.6_Instance_62 IL_31462.6,IL_3CGR_002,A19_U7	A	A	C		G	U
IL_31462.6_Sequence_62 IL_31462.63CGR_A19_U7	A	A	C	*	G	U	true	88	0	0	1.13
IL_31462.6_Instance_63 IL_31462.6,IL_5J7L_312,G1980_C1771	G	A	U		G	C
IL_31462.6_Sequence_63 IL_31462.65J7L_G_1980_C_1771	G	A	U	*	G	C	true	73	0	0	2.53
IL_31462.6_Instance_64 IL_31462.6,IL_9DFE_017,G763_C698	G	A	G		C	C
IL_31462.6_Sequence_64 IL_31462.69DFE_G763_C698	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_65 IL_31462.6,IL_4V9F_002,G448_C34	G	A	C		G	C
IL_31462.6_Sequence_65 IL_31462.64V9F_G448_C34	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_66 IL_31462.6,IL_4WF9_068,G2007_C1798	G	A	U		G	C
IL_31462.6_Sequence_66 IL_31462.64WF9_G_2007_C_1798	G	A	U	*	G	C	true	73	0	0	2.53
IL_31462.6_Instance_67 IL_31462.6,IL_9C75_002,G30_C14	G	A	C		G	C
IL_31462.6_Sequence_67 IL_31462.69C75_G30_C14	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_68 IL_31462.6,IL_8CRE_031,A891_U825	A	A	U		A	U
IL_31462.6_Sequence_68 IL_31462.68CRE_A891_U825	A	A	U	*	A	U	true	83	0	0	1.62
IL_31462.6_Instance_69 IL_31462.6,IL_4WF9_006,C175_G153	C	A	G		C	G
IL_31462.6_Sequence_69 IL_31462.64WF9_C175_G153	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_70 IL_31462.6,IL_8P9A_351,G3177_C3211	G	A	U		A	C
IL_31462.6_Sequence_70 IL_31462.68P9A_G_3177_C_3211	G	A	U	*	A	C	true	91	0	0	0.83
IL_31462.6_Instance_71 IL_31462.6,IL_6MSF_001,C2_G13	C	A	C		G	G
IL_31462.6_Sequence_71 IL_31462.66MSF_C2_G13	C	A	C	*	G	G	true	93	0	0	0.70
IL_31462.6_Instance_72 IL_31462.6,IL_6CYT_001,G34_C30	G	A	G		C	C
IL_31462.6_Sequence_72 IL_31462.66CYT_G34_C30	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_73 IL_31462.6,IL_4WF9_022,G808_C743	G	A	A		U	C
IL_31462.6_Sequence_73 IL_31462.64WF9_G808_C743	G	A	A	*	U	C	true	89	0	0	1.01
IL_31462.6_Instance_74 IL_31462.6,IL_8VMB_002,U46_G76	U	A	G		C	G
IL_31462.6_Sequence_74 IL_31462.68VMB_U46_G76	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_75 IL_31462.6,IL_7A0S_016,G776_C711	G	A	G		C	C
IL_31462.6_Sequence_75 IL_31462.67A0S_G776_C711	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_76 IL_31462.6,IL_7A0S_012,G600_C679	G	A	C		G	C
IL_31462.6_Sequence_76 IL_31462.67A0S_G600_C679	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_77 IL_31462.6,IL_4V9F_025,G856_C789	G	A	U		A	C
IL_31462.6_Sequence_77 IL_31462.64V9F_G856_C789	G	A	U	*	A	C	true	91	0	0	0.83
IL_31462.6_Instance_78 IL_31462.6,IL_4V9F_098,C2895_G2861	C	A	C		G	G
IL_31462.6_Sequence_78 IL_31462.64V9F_C_2895_G_2861	C	A	C	*	G	G	true	93	0	0	0.70
IL_31462.6_Instance_79 IL_31462.6,IL_5J7L_261,G763_C698	G	A	C		G	C
IL_31462.6_Sequence_79 IL_31462.65J7L_G763_C698	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_80 IL_31462.6,IL_3CGS_002,G20_U6	G	A	C		G	U
IL_31462.6_Sequence_80 IL_31462.63CGS_G20_U6	G	A	C	*	G	U	true	76	0	0	2.25
IL_31462.6_Instance_81 IL_31462.6,IL_2QUX_002,C5_G21	C	A	G		C	G
IL_31462.6_Sequence_81 IL_31462.62QUX_C5_G21	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_82 IL_31462.6,IL_4L8H_001,C4_G17	C	A	U		A	G
IL_31462.6_Sequence_82 IL_31462.64L8H_C4_G17	C	A	U	*	A	G	true	88	0	0	1.18
IL_31462.6_Instance_83 IL_31462.6,IL_7DLZ_001,U6_G40	U	A	C		G	G
IL_31462.6_Sequence_83 IL_31462.67DLZ_U6_G40	U	A	C	*	G	G	true	84	0	0	1.50
IL_31462.6_Instance_84 IL_31462.6,IL_8P9A_288,U1398_G1412	U	A	G		C	G
IL_31462.6_Sequence_84 IL_31462.68P9A_U_1398_G_1412	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_85 IL_31462.6,IL_8UIW_001,G44_C64	G	A	U		A	C
IL_31462.6_Sequence_85 IL_31462.68UIW_G44_C64	G	A	U	*	A	C	true	91	0	0	0.83
IL_31462.6_Instance_86 IL_31462.6,IL_8CRE_455,C1412_G1266	C	A	G		C	G
IL_31462.6_Sequence_86 IL_31462.68CRE_C_1412_G_1266	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_87 IL_31462.6,IL_6D3P_004,G27_C13	G	A	G		C	C
IL_31462.6_Sequence_87 IL_31462.66D3P_G27_C13	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_88 IL_31462.6,IL_8P9A_441,C1426_G1281	C	A	G		C	G
IL_31462.6_Sequence_88 IL_31462.68P9A_C_1426_G_1281	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_89 IL_31462.6,IL_1MFQ_005,G175_C221	G	A	G		C	C
IL_31462.6_Sequence_89 IL_31462.61MFQ_G175_C221	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_90 IL_31462.6,IL_9DFE_058,G1459_C1451	G	A	G		C	C
IL_31462.6_Sequence_90 IL_31462.69DFE_G_1459_C_1451	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_91 IL_31462.6,IL_8UO6_001,G60_C43	G	A	C		G	C
IL_31462.6_Sequence_91 IL_31462.68UO6_G60_C43	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_92 IL_31462.6,IL_7KGA_002,U39_A15	U	A	G		C	A
IL_31462.6_Sequence_92 IL_31462.67KGA_U39_A15	U	A	G	*	C	A	true	93	0	0	0.69
IL_31462.6_Instance_93 IL_31462.6,IL_4PHY_004,C20_G31	C	A	C		G	G
IL_31462.6_Sequence_93 IL_31462.64PHY_C20_G31	C	A	C	*	G	G	true	93	0	0	0.70
IL_31462.6_Instance_94 IL_31462.6,IL_8OI5_134,A63_U16	A	A	G		C	U
IL_31462.6_Sequence_94 IL_31462.68OI5_A63_U16	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_95 IL_31462.6,IL_8P9A_364,A63_U16	A	A	G		C	U
IL_31462.6_Sequence_95 IL_31462.68P9A_A63_U16	A	A	G	*	C	U	true	92	0	0	0.79
IL_31462.6_Instance_96 IL_31462.6,IL_8VMA_003,U46_G79	U	A	G		C	G
IL_31462.6_Sequence_96 IL_31462.68VMA_U46_G79	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_97 IL_31462.6,IL_5FJC_001,G13_C41	G	A	G		C	C
IL_31462.6_Sequence_97 IL_31462.65FJC_G13_C41	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_98 IL_31462.6,IL_9DFE_061,U1489_G1500	U	A	G		C	G
IL_31462.6_Sequence_98 IL_31462.69DFE_U_1489_G_1500	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_99 IL_31462.6,IL_9DID_002,U35_A49	U	A	U		A	A
IL_31462.6_Sequence_99 IL_31462.69DID_U35_A49	U	A	U	*	A	A	true	84	0	0	1.51
IL_31462.6_Instance_100 IL_31462.6,IL_7VTI_001,U31_G5	U	A	C		G	G
IL_31462.6_Sequence_100 IL_31462.67VTI_U31_G5	U	A	C	*	G	G	true	84	0	0	1.50
IL_31462.6_Instance_101 IL_31462.6,IL_8CRE_416,A503_U480	A	A	U		A	U
IL_31462.6_Sequence_101 IL_31462.68CRE_A503_U480	A	A	U	*	A	U	true	83	0	0	1.62
IL_31462.6_Instance_102 IL_31462.6,IL_8CRE_019,G505_C579	G	A	G		C	C
IL_31462.6_Sequence_102 IL_31462.68CRE_G505_C579	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_103 IL_31462.6,IL_3OXE_001,G12_C28	G	A	A		U	C
IL_31462.6_Sequence_103 IL_31462.63OXE_G12_C28	G	A	A	*	U	C	true	89	0	0	1.01
IL_31462.6_Instance_104 IL_31462.6,IL_4LGT_002,C2601_G2592	C	A	G		C	G
IL_31462.6_Sequence_104 IL_31462.64LGT_C_2601_G_2592	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_105 IL_31462.6,IL_2OZB_001,U24_G48	U	A	G		C	G
IL_31462.6_Sequence_105 IL_31462.62OZB_U24_G48	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_106 IL_31462.6,IL_5J7L_302,C1489_G1500	C	A	G		C	G
IL_31462.6_Sequence_106 IL_31462.65J7L_C_1489_G_1500	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_107 IL_31462.6,IL_5J7L_049,C1195_G1061	C	A	A		U	G
IL_31462.6_Sequence_107 IL_31462.65J7L_C_1195_G_1061	C	A	A	*	U	G	true	86	0	0	1.36
IL_31462.6_Instance_108 IL_31462.6,IL_8X5V_002,G61_C56	G	A	C		G	C
IL_31462.6_Sequence_108 IL_31462.68X5V_G61_C56	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_109 IL_31462.6,IL_7KGA_005,U39_A15	U	A	G		C	A
IL_31462.6_Sequence_109 IL_31462.67KGA_U39_A15	U	A	G	*	C	A	true	93	0	0	0.69
IL_31462.6_Instance_110 IL_31462.6,IL_8CRE_062,C1381_G1417	C	A	G		C	G
IL_31462.6_Sequence_110 IL_31462.68CRE_C_1381_G_1417	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_111 IL_31462.6,IL_8P9A_286,C1385_G1421	C	A	G		C	G
IL_31462.6_Sequence_111 IL_31462.68P9A_C_1385_G_1421	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_112 IL_31462.6,IL_9DFE_100,C2601_G2592	C	A	G		C	G
IL_31462.6_Sequence_112 IL_31462.69DFE_C_2601_G_2592	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_113 IL_31462.6,IL_8XZL_003,G32_C28	G	A	C		G	C
IL_31462.6_Sequence_113 IL_31462.68XZL_G32_C28	G	A	C	*	G	C	true	96	0	0	0.35
IL_31462.6_Instance_114 IL_31462.6,IL_5J7L_002,C396_G45	C	A	U		A	G
IL_31462.6_Sequence_114 IL_31462.65J7L_C396_G45	C	A	U	*	A	G	true	88	0	0	1.18
IL_31462.6_Instance_115 IL_31462.6,IL_4PHY_002,G38_C13	G	A	G		C	C
IL_31462.6_Sequence_115 IL_31462.64PHY_G38_C13	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_116 IL_31462.6,IL_5CNR_002,G38_C13	G	A	G		C	C
IL_31462.6_Sequence_116 IL_31462.65CNR_G38_C13	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_117 IL_31462.6,IL_4LFB_002,G396_U45	G	A	C		G	U
IL_31462.6_Sequence_117 IL_31462.64LFB_G396_U45	G	A	C	*	G	U	true	76	0	0	2.25
IL_31462.6_Instance_118 IL_31462.6,IL_4P97_002,G38_C13	G	A	G		C	C
IL_31462.6_Sequence_118 IL_31462.64P97_G38_C13	G	A	G	*	C	C	true	100	0	0	0.00
IL_31462.6_Instance_119 IL_31462.6,IL_2NZ4_004,C5_G53	C	A	G		C	G
IL_31462.6_Sequence_119 IL_31462.62NZ4_C5_G53	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_120 IL_31462.6,IL_4V9F_079,U2290_A2280	U	A	C		G	A
IL_31462.6_Sequence_120 IL_31462.64V9F_U_2290_A_2280	U	A	C	*	G	A	true	89	0	0	1.03
IL_31462.6_Instance_121 IL_31462.6,IL_8P9A_325,C2625_G2615	C	A	C		G	G
IL_31462.6_Sequence_121 IL_31462.68P9A_C_2625_G_2615	C	A	C	*	G	G	true	93	0	0	0.70
IL_31462.6_Instance_122 IL_31462.6,IL_5J7L_064,U1440_G1461	U	A	G		C	G
IL_31462.6_Sequence_122 IL_31462.65J7L_U_1440_G_1461	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_123 IL_31462.6,IL_4WF9_098,C2628_G2619	C	A	G		C	G
IL_31462.6_Sequence_123 IL_31462.64WF9_C_2628_G_2619	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_124 IL_31462.6,IL_4V9F_032,U942_G1024	U	A	G		C	G
IL_31462.6_Sequence_124 IL_31462.64V9F_U942_G_1024	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_125 IL_31462.6,IL_5J7L_355,U65_G18	U	A	G		C	G
IL_31462.6_Sequence_125 IL_31462.65J7L_U65_G18	U	A	G	*	C	G	true	88	0	0	1.16
IL_31462.6_Instance_126 IL_31462.6,IL_7JNH_003,U55_G36	U	A	C		G	G
IL_31462.6_Sequence_126 IL_31462.67JNH_U55_G36	U	A	C	*	G	G	true	84	0	0	1.50
IL_31462.6_Instance_127 IL_31462.6,IL_9DFE_110,C65_G18	C	A	G		C	G
IL_31462.6_Sequence_127 IL_31462.69DFE_C65_G18	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_128 IL_31462.6,IL_4WF9_112,U63_A16	U	A	G		C	A
IL_31462.6_Sequence_128 IL_31462.64WF9_U63_A16	U	A	G	*	C	A	true	93	0	0	0.69
IL_31462.6_Instance_129 IL_31462.6,IL_4V9F_101,C64_G16	C	A	G		C	G
IL_31462.6_Sequence_129 IL_31462.64V9F_C64_G16	C	A	G	*	C	G	true	96	0	0	0.35
IL_31462.6_Instance_130 IL_31462.6,IL_7DLZ_002,U9_G38	U	A	C		G	G
IL_31462.6_Sequence_130 IL_31462.67DLZ_U9_G38	U	A	C	*	G	G	true	84	0	0	1.50

Conserved interactions between motif group positions in IL_31462.6:

1 3 s35 
1 5 cWW 
3 4 cWW 
3 5 s55 
4 5 s35

JAR3D SCFG/MRF model for IL_31462.6:

Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.004440720,0.013933970,0.005016851,0.134611335,0.000000000],[0.022733429,0.005275593,0.208726990,0.005854746,0.000000000],[0.005018371,0.295897505,0.001007918,0.044063176,0.000000000],[0.149083171,0.005840063,0.093100805,0.005395358,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair A11 - U18 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.988636364,0.003787879,0.003787879,0.003787879,0.000000000] | Position [1] | Left Index [2] | Right Index [4] // Fixed node on left for 8VFS|1|A|A|12
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.004268112,0.009354146,0.004834957,0.130330753,0.000000000],[0.011225861,0.004467615,0.253042646,0.005765991,0.000000000],[0.004827818,0.358101295,0.000937801,0.017287329,0.000000000],[0.156411866,0.005780311,0.028660312,0.004703186,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G13 - C17 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation

Sequences of instances from IL_31462.6:> IL_31462.6 8VFS A 11 U 18 AAG*CU > IL_31462.6 1DUQ G 120 C 109 GAC*GC > IL_31462.6 9DE7 A 15 U 46 AAG*CU > IL_31462.6 1I9X U 4 A 10 UAA*UA > IL_31462.6 1CSL G 67 C 51 GAC*GC > IL_31462.6 5AOX G 56 C 109 GAG*CC > IL_31462.6 8P9A G 337 U 26 GAC*GU > IL_31462.6 3CGP U 19 A 7 UAA*UA > IL_31462.6 8CRE C 575 G 509 CAG*CG > IL_31462.6 9DFE G 1219 C 1230 GAC*GC > IL_31462.6 9DID U 35 A 49 UAU*AA > IL_31462.6 5J7L U 1393 A 923 UAC*GA > IL_31462.6 8VM9 U 43 G 76 UAG*CG > IL_31462.6 8CRE G 337 U 26 GAC*GU > IL_31462.6 4LFB U 1393 A 923 UAC*GA > IL_31462.6 8CRE U 1617 A 1132 UAC*GA > IL_31462.6 8P9A U 1630 A 1147 UAC*GA > IL_31462.6 4P3U A 17 U 31 AAG*CU > IL_31462.6 9DFE U 895 G 881 UAC*GG > IL_31462.6 4P3U A 17 U 31 AAG*CU > IL_31462.6 8P9A U 1074 A 1084 UAC*GA > IL_31462.6 1EFO G 15 C 4 GAG*CC > IL_31462.6 4R4V C 651 G 767 CAG*CG > IL_31462.6 8VFS U 10 G 19 UAA*UG > IL_31462.6 7JJU C 31 G 13 CAU*AG > IL_31462.6 7JJU C 31 G 13 CAU*AG > IL_31462.6 6XH2 G 34 C 30 GAG*CC > IL_31462.6 4P3U A 40 U 8 AAG*CU > IL_31462.6 8P9A C 577 G 513 CAG*UG > IL_31462.6 5J7L G 442 C 37 GAC*GC > IL_31462.6 4AOB G 13 C 41 GAG*CC > IL_31462.6 9DFE G 442 C 37 GAC*GC > IL_31462.6 3B31 C 6181 G 6195 CAG*CG > IL_31462.6 4WF9 G 488 C 37 GAC*GC > IL_31462.6 5J7L C 2601 G 2592 CAG*CG > IL_31462.6 1I9X U 4 A 10 UAA*UA > IL_31462.6 9DFE G 1980 C 1771 GAC*GC > IL_31462.6 2VPL G 28 C 17 GAA*UC > IL_31462.6 1U9S G 107 C 96 GAC*GC > IL_31462.6 1NBS G 129 C 114 GAC*GC > IL_31462.6 8CRE G 775 C 749 GAG*CC > IL_31462.6 8P9A G 779 C 753 GAG*CC > IL_31462.6 6WPI G 11 C 42 GAA*UC > IL_31462.6 2C4Q G 5 C 15 GAG*CC > IL_31462.6 8P9A A 265 U 289 AAU*AU > IL_31462.6 8CRE C 2942 G 2933 CAG*CG > IL_31462.6 8P9A G 2323 U 2129 GAG*CU > IL_31462.6 1JZV U 12 A 5 UAC*GA > IL_31462.6 4V9F C 2021 G 1827 CAG*CG > IL_31462.6 4P3U A 40 U 8 AAG*CU > IL_31462.6 8CRE G 3147 C 3176 GAU*AC > IL_31462.6 5WWT G 37 C 32 GAU*AC > IL_31462.6 8P9A A 505 U 482 AAU*AU > IL_31462.6 8CRE G 2301 U 2107 GAG*CU > IL_31462.6 3V7E G 13 C 41 GAG*CC > IL_31462.6 4R4V U 712 A 661 UAG*CA > IL_31462.6 7A0S G 1963 C 1762 GAU*GC > IL_31462.6 7MKY G 49 C 36 GAU*AC > IL_31462.6 8P9A C 2970 G 2961 CAG*CG > IL_31462.6 7A0S G 454 C 37 GAC*GC > IL_31462.6 1U63 G 28 C 17 GAA*UC > IL_31462.6 3CGR A 19 U 7 AAC*GU > IL_31462.6 5J7L G 1980 C 1771 GAU*GC > IL_31462.6 9DFE G 763 C 698 GAG*CC > IL_31462.6 4V9F G 448 C 34 GAC*GC > IL_31462.6 4WF9 G 2007 C 1798 GAU*GC > IL_31462.6 9C75 G 30 C 14 GAC*GC > IL_31462.6 8CRE A 891 U 825 AAU*AU > IL_31462.6 4WF9 C 175 G 153 CAG*CG > IL_31462.6 8P9A G 3177 C 3211 GAU*AC > IL_31462.6 6MSF C 2 G 13 CAC*GG > IL_31462.6 6CYT G 34 C 30 GAG*CC > IL_31462.6 4WF9 G 808 C 743 GAA*UC > IL_31462.6 8VMB U 46 G 76 UAG*CG > IL_31462.6 7A0S G 776 C 711 GAG*CC > IL_31462.6 7A0S G 600 C 679 GAC*GC > IL_31462.6 4V9F G 856 C 789 GAU*AC > IL_31462.6 4V9F C 2895 G 2861 CAC*GG > IL_31462.6 5J7L G 763 C 698 GAC*GC > IL_31462.6 3CGS G 20 U 6 GAC*GU > IL_31462.6 2QUX C 5 G 21 CAG*CG > IL_31462.6 4L8H C 4 G 17 CAU*AG > IL_31462.6 7DLZ U 6 G 40 UAC*GG > IL_31462.6 8P9A U 1398 G 1412 UAG*CG > IL_31462.6 8UIW G 44 C 64 GAU*AC > IL_31462.6 8CRE C 1412 G 1266 CAG*CG > IL_31462.6 6D3P G 27 C 13 GAG*CC > IL_31462.6 8P9A C 1426 G 1281 CAG*CG > IL_31462.6 1MFQ G 175 C 221 GAG*CC > IL_31462.6 9DFE G 1459 C 1451 GAG*CC > IL_31462.6 8UO6 G 60 C 43 GAC*GC > IL_31462.6 7KGA U 39 A 15 UAG*CA > IL_31462.6 4PHY C 20 G 31 CAC*GG > IL_31462.6 8OI5 A 63 U 16 AAG*CU > IL_31462.6 8P9A A 63 U 16 AAG*CU > IL_31462.6 8VMA U 46 G 79 UAG*CG > IL_31462.6 5FJC G 13 C 41 GAG*CC > IL_31462.6 9DFE U 1489 G 1500 UAG*CG > IL_31462.6 9DID U 35 A 49 UAU*AA > IL_31462.6 7VTI U 31 G 5 UAC*GG > IL_31462.6 8CRE A 503 U 480 AAU*AU > IL_31462.6 8CRE G 505 C 579 GAG*CC > IL_31462.6 3OXE G 12 C 28 GAA*UC > IL_31462.6 4LGT C 2601 G 2592 CAG*CG > IL_31462.6 2OZB U 24 G 48 UAG*CG > IL_31462.6 5J7L C 1489 G 1500 CAG*CG > IL_31462.6 5J7L C 1195 G 1061 CAA*UG > IL_31462.6 8X5V G 61 C 56 GAC*GC > IL_31462.6 7KGA U 39 A 15 UAG*CA > IL_31462.6 8CRE C 1381 G 1417 CAG*CG > IL_31462.6 8P9A C 1385 G 1421 CAG*CG > IL_31462.6 9DFE C 2601 G 2592 CAG*CG > IL_31462.6 8XZL G 32 C 28 GAC*GC > IL_31462.6 5J7L C 396 G 45 CAU*AG > IL_31462.6 4PHY G 38 C 13 GAG*CC > IL_31462.6 5CNR G 38 C 13 GAG*CC > IL_31462.6 4LFB G 396 U 45 GAC*GU > IL_31462.6 4P97 G 38 C 13 GAG*CC > IL_31462.6 2NZ4 C 5 G 53 CAG*CG > IL_31462.6 4V9F U 2290 A 2280 UAC*GA > IL_31462.6 8P9A C 2625 G 2615 CAC*GG > IL_31462.6 5J7L U 1440 G 1461 UAG*CG > IL_31462.6 4WF9 C 2628 G 2619 CAG*CG > IL_31462.6 4V9F U 942 G 1024 UAG*CG > IL_31462.6 5J7L U 65 G 18 UAG*CG > IL_31462.6 7JNH U 55 G 36 UAC*GG > IL_31462.6 9DFE C 65 G 18 CAG*CG > IL_31462.6 4WF9 U 63 A 16 UAG*CA > IL_31462.6 4V9F C 64 G 16 CAG*CG > IL_31462.6 7DLZ U 9 G 38 UAC*GG