| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 4 I | 6 5 3 | 7 5 I | 8 6 4 | 9 6 I | 10 7 | 11 6 I | 12 6 5 | 13 5 I | 14 5 6 | 15 2 I | 16 2 7 | 17 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_51479.1_Instance_1 IL_51479.1,IL_2OE8_002,C1407_G1494 | C | G | C | U | A | A | A | A | G | |||||||||||||
| IL_51479.1_Sequence_1 IL_51479.12OE8_C_1407_G_1494 | C | G | C | U | * | A | A | A | A | G | true | 100 | 0 | 0 | 0.00 | |||||||
| IL_51479.1_Instance_2 IL_51479.1,IL_2OE5_002,C1407_G1494 | C | G | C | U | A | A | A | A | G | |||||||||||||
| IL_51479.1_Sequence_2 IL_51479.12OE5_C_1407_G_1494 | C | G | C | U | * | A | A | A | A | G | true | 100 | 0 | 0 | 0.00 | |||||||
| IL_51479.1_Instance_3 IL_51479.1,IL_2O3Y_003,C30_G19 | C | G | C | U | A | A | A | A | G | |||||||||||||
| IL_51479.1_Sequence_3 IL_51479.12O3Y_C30_G19 | C | G | C | U | * | A | A | A | A | G | true | 100 | 0 | 0 | 0.00 | |||||||
| IL_51479.1_Instance_4 IL_51479.1,IL_2O3V_003,C30_G19 | C | G | C | U | A | A | A | A | G | |||||||||||||
| IL_51479.1_Sequence_4 IL_51479.12O3V_C30_G19 | C | G | C | U | * | A | A | A | A | G | true | 100 | 0 | 0 | 0.00 | |||||||
| IL_51479.1_Instance_5 IL_51479.1,IL_3MEI_004,C7_G17 | C | G | C | C | G | C | C | U | G | |||||||||||||
| IL_51479.1_Sequence_5 IL_51479.13MEI_C7_G17 | C | G | C | C | * | G | C | C | U | G | true | 85 | 0 | 0 | 1.38 | |||||||
| IL_51479.1_Instance_6 IL_51479.1,IL_4EYA_008,C6_G9 | C | U | U | G | C | U | U | G | ||||||||||||||
| IL_51479.1_Sequence_6 IL_51479.14EYA_C6_G9 | C | U | U | G | * | C | U | U | G | true | 84 | 0 | 0 | 1.55 | ||||||||
| IL_51479.1_Instance_7 IL_51479.1,IL_4WF9_110,G5_C110 | G | U | G | A | U | G | C | C | ||||||||||||||
| IL_51479.1_Sequence_7 IL_51479.14WF9_G5_C110 | G | U | G | A | * | U | G | C | C | true | 65 | 0 | 0 | 3.29 | ||||||||
| IL_51479.1_Instance_8 IL_51479.1,IL_8CRE_401,A160_U150 | A | G | A | G | C | C | G | U | ||||||||||||||
| IL_51479.1_Sequence_8 IL_51479.18CRE_A160_U150 | A | G | A | G | * | C | C | G | U | true | 73 | 0 | 0 | 2.61 | ||||||||
| IL_51479.1_Instance_9 IL_51479.1,IL_4EYA_010,C6_G9 | C | U | U | G | C | U | U | G | ||||||||||||||
| IL_51479.1_Sequence_9 IL_51479.14EYA_C6_G9 | C | U | U | G | * | C | U | U | G | true | 84 | 0 | 0 | 1.55 | ||||||||
| IL_51479.1_Instance_10 IL_51479.1,IL_8BH9_001,A430_U503 | A | A | U | G | C | A | U | U | ||||||||||||||
| IL_51479.1_Sequence_10 IL_51479.18BH9_A430_U503 | A | A | U | G | * | C | A | U | U | true | 67 | 0 | 0 | 3.10 |
1 2 s35 1 7 cWW 2 3 s35 2 7 s55 3 4 s35 3 6 cWS 4 5 cWW 5 6 s35JAR3D SCFG/MRF model for IL_51479.1:
Character Definition | A,C,G,U,* // Identity and order of characters in matrices InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node BasepairNode | Deletion Probability [0.0000001233454509] | Pair Probability [[0.008814246,0.017062051,0.009982750,0.203736191,0.000000000],[0.017995454,0.008966216,0.254115499,0.012104262,0.000000000],[0.010047675,0.196752680,0.001928715,0.027582299,0.000000000],[0.185487620,0.011948183,0.023820232,0.009655928,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.004949270,0.989853997,0.004949270,0.000247463] | Right Letter Distribution [0.375000000,0.125000000,0.125000000,0.375000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C1407 - G1494 cWW FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.125000000,0.041666667,0.541666667,0.291666667,0.000000000] | Position [1] | Left Index [2] | Right Index [6] // Fixed node on left for 2OE8|1|A|G|1408 InitialNode | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // New Initial node after Fixed node BasepairNode | Deletion Probability [0.0000017103020118] | Pair Probability [[0.015590537,0.044858556,0.013802746,0.018917469,0.000000000],[0.254112179,0.219102600,0.002204035,0.210550557,0.000000000],[0.023578619,0.002204035,0.050111604,0.009256143,0.000000000],[0.039746633,0.021507816,0.010262894,0.064193577,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.498635574,0.498635574,0.002604813,0.000124039] | Right Letter Distribution [0.642857143,0.214285714,0.071428571,0.071428571,0.000000000] | Left Index [3] | Right Index [6] // Basepair C1409 - A1492 cWS BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008706313,0.017653246,0.009722871,0.193940148,0.000000000],[0.018022506,0.008975920,0.194839837,0.011263126,0.000000000],[0.009694011,0.223052450,0.001916212,0.025586316,0.000000000],[0.222751666,0.011216613,0.033085609,0.009573157,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair U1410 - A1490 cWW HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_51479.1:
> IL_51479.1 2OE8 C 1407 G 1494 CGCU*AAAAG > IL_51479.1 2OE5 C 1407 G 1494 CGCU*AAAAG > IL_51479.1 2O3Y C 30 G 19 CGCU*AAAAG > IL_51479.1 2O3V C 30 G 19 CGCU*AAAAG > IL_51479.1 3MEI C 7 G 17 CGCC*GCCUG > IL_51479.1 4EYA C 6 G 9 CUUG*CUUG > IL_51479.1 4WF9 G 5 C 110 GUGA*UGCC > IL_51479.1 8CRE A 160 U 150 AGAG*CCGU > IL_51479.1 4EYA C 6 G 9 CUUG*CUUG > IL_51479.1 8BH9 A 430 U 503 AAUG*CAUU