| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 4 I | 8 5 4 | 9 5 I | 10 6 | 11 5 I | 12 5 5 | 13 4 I | 14 4 6 | 15 3 I | 16 3 7 | 17 2 I | 18 2 8 | 19 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_68574.4_Instance_1 IL_68574.4,IL_5J7L_299,U1468_G1524 | U | A | A | G | U | G | A | U | G | |||||||||||||||
| IL_68574.4_Sequence_1 IL_68574.45J7L_U_1468_G_1524 | U | A | A | G | * | U | G | A | U | G | true | 99 | 0 | 0 | 0.18 | |||||||||
| IL_68574.4_Instance_2 IL_68574.4,IL_9DFE_045,U1240_G1206 | U | A | A | G | C | G | A | U | G | |||||||||||||||
| IL_68574.4_Sequence_2 IL_68574.49DFE_U_1240_G_1206 | U | A | A | G | * | C | G | A | U | G | true | 100 | 0 | 0 | 0.00 | |||||||||
| IL_68574.4_Instance_3 IL_68574.4,IL_3BNR_011,C5_G19 | C | A | C | C | G | C | A | A | G | |||||||||||||||
| IL_68574.4_Sequence_3 IL_68574.43BNR_C5_G19 | C | A | C | C | * | G | C | A | A | G | true | 79 | 0 | 0 | 2.66 |
1 7 s35 1 8 cWW 2 3 s35 2 6 s33 2 7 tHH 3 4 s35 3 6 tHS 4 5 cWW 5 6 s35 6 7 s33 7 8 s55 6 2 6BPh 7 2 6BPh 3 6 6BRJAR3D SCFG/MRF model for IL_68574.4:
Character Definition | A,C,G,U,* // Identity and order of characters in matrices InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node BasepairNode | Deletion Probability [0.0000001200211660] | Pair Probability [[0.010572638,0.014877250,0.013044997,0.090228256,0.000000000],[0.206427106,0.021659062,0.106652866,0.015137891,0.000000000],[0.013291996,0.091543616,0.002872521,0.017432502,0.000000000],[0.123374477,0.014077094,0.246524532,0.012283196,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.016116035,0.966962127,0.016116035,0.000805802] | Right Letter Distribution [0.300000000,0.100000000,0.100000000,0.500000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair U1468 - G1524 cWW BasepairNode | Deletion Probability [0.0000234451146992] | Pair Probability [[0.451005643,0.043111764,0.002572881,0.002624952,0.000000000],[0.330476924,0.000536639,0.045748868,0.005099191,0.000000000],[0.018728737,0.045164202,0.001339451,0.000536639,0.000000000],[0.025514230,0.026466599,0.000536639,0.000536639,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A1469 - A1522 tHH BasepairNode | Deletion Probability [0.0000234451146992] | Pair Probability [[0.041213089,0.041519272,0.365732433,0.046004813,0.000000000],[0.043629609,0.099469403,0.003463150,0.043293583,0.000000000],[0.000494736,0.000494736,0.016930238,0.000494736,0.000000000],[0.002331691,0.000494736,0.293939042,0.000494736,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair A1470 - G1521 tHS BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.011589741,0.110338296,0.012004041,0.159995716,0.000000000],[0.016866856,0.010578618,0.157735464,0.013692293,0.000000000],[0.011902799,0.159428801,0.002450451,0.133386380,0.000000000],[0.144149775,0.014131177,0.021334200,0.020415391,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair G1471 - U1520 cWW HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_68574.4:
> IL_68574.4 5J7L U 1468 G 1524 UAAG*UGAUG > IL_68574.4 9DFE U 1240 G 1206 UAAG*CGAUG > IL_68574.4 3BNR C 5 G 19 CACC*GCAAG